mRNA_P-wetherbeei_contig13301.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13301.1.1
Unique NamemRNA_P-wetherbeei_contig13301.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13301.1.1 vs. uniprot
Match: A0A6H5JDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDP5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.480e-10
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 IAANVRSIMDMATVDIKLELQMRGVEHRDAFEKLDLAQRLAAAR 132
            +A   R +M + T+DIKLELQMRGVEHRDAFEK DLA+RLA AR
Sbjct:  122 VATETRRLMSVPTIDIKLELQMRGVEHRDAFEKADLARRLAEAR 165
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BLAST of mRNA_P-wetherbeei_contig13301.1.1 vs. uniprot
Match: D7FH23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH23_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 3.790e-10
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 IAANVRSIMDMATVDIKLELQMRGVEHRDAFEKLDLAQRLAAAR 132
            +A   R +M   T+DIKLELQMRGVEHRDAFEK DLA+RLA AR
Sbjct:  130 VATETRRLMSEPTIDIKLELQMRGVEHRDAFEKADLARRLAEAR 173
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BLAST of mRNA_P-wetherbeei_contig13301.1.1 vs. uniprot
Match: A0A836CCS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.610e-8
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   22 IMDMATVDIKLELQMRGVEHRDAFEKLDLAQRLAAAR 132
            IM M T+DIKLELQMRG++HRDA EK +LA+RLA AR
Sbjct:   82 IMTMPTIDIKLELQMRGIDHRDALEKQELARRLAQAR 118
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13301.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDP5_9PHAE1.480e-1070.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH23_ECTSI3.790e-1070.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CCS4_9STRA5.610e-872.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13301contigP-wetherbeei_contig13301:656..835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size180
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003220.1
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.7722464-CDS-P-wetherbeei_contig13301:655..8111683185980.7722464-CDS-P-wetherbeei_contig13301:655..811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13301 656..811 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.779964-UTR-P-wetherbeei_contig13301:811..8351683185980.779964-UTR-P-wetherbeei_contig13301:811..835Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13301 812..835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13301.1.1prot_P-wetherbeei_contig13301.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13301 656..811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13301.1.1

>prot_P-wetherbeei_contig13301.1.1 ID=prot_P-wetherbeei_contig13301.1.1|Name=mRNA_P-wetherbeei_contig13301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
MDMATVDIKLELQMRGVEHRDAFEKLDLAQRLAAAREAANTKTILSARED
DD
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mRNA from alignment at P-wetherbeei_contig13301:656..835-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13301.1.1 ID=mRNA_P-wetherbeei_contig13301.1.1|Name=mRNA_P-wetherbeei_contig13301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=180bp|location=Sequence derived from alignment at P-wetherbeei_contig13301:656..835- (Phaeothamnion wetherbeei SAG_119_79)
ATAGCTGCCAACGTCCGCAGCATCATGGACATGGCGACGGTGGACATCAA
GCTGGAGCTGCAAATGCGCGGCGTCGAGCACCGCGATGCCTTTGAAAAGC
TGGACCTGGCGCAGCGGTTGGCGGCAGCGCGGGAGGCAGCCAACACGAAA
ACGATTCTGTCAGCTAGGGAAGACGACGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13301:656..835-

>mRNA_P-wetherbeei_contig13301.1.1 ID=mRNA_P-wetherbeei_contig13301.1.1|Name=mRNA_P-wetherbeei_contig13301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig13301:656..835- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACATGGCGACGGTGGACATCAAGCTGGAGCTGCAAATGCGCGGCGT
CGAGCACCGCGATGCCTTTGAAAAGCTGGACCTGGCGCAGCGGTTGGCGG
CAGCGCGGGAGGCAGCCAACACGAAAACGATTCTGTCAGCTAGGGAAGAC
GACGAT
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