mRNA_P-wetherbeei_contig1330.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1330.3.1
Unique NamemRNA_P-wetherbeei_contig1330.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1330.3.1 vs. uniprot
Match: A0A835ZFI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-11
Identity = 60/178 (33.71%), Postives = 88/178 (49.44%), Query Frame = 1 
Query:  172 TVSHRYLRSKLRVGSSHLPRHFQKDETVFARDDIPSRQRARVNEVRAWKQRSMALLPMGRRPSFSLSTYVRPVPQRCCLVLEKDQRSG----FAYNYRAEVL----LSKVPAPPPCRSKFSVCAVSTADISTCIALREAYPGNAVRHPKRTEELPVHPALAGKPAWNGSSVLTPAERR 681
            T +  +L +  +VGS         +   F++DD+P + RAR +EV  WK R    LP GR+ +++ S  + P P    L    + + G    + +NYRAEVL    L  VP P    +KF V           +A   + P  +   P    E+PVHP+LA + AWN  +VLTPAE+R
Sbjct:    6 TTTFPFLHATFKVGSCRG----SLNHISFSKDDVPPKARARHDEVVMWKSRRT--LPAGRQ-TWNHSVELPPYP---ALGERANLQGGSSCLYKHNYRAEVLPESPLPHVPRP----TKFDV----------SVAAPTSSPPRSGARPYSMTEMPVHPSLASRVAWNACAVLTPAEKR 159
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BLAST of mRNA_P-wetherbeei_contig1330.3.1 vs. uniprot
Match: A0A7S1G460_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G460_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.810e-10
Identity = 55/160 (34.38%), Postives = 81/160 (50.62%), Query Frame = 1 
Query:  190 LRSKLRVGSSHLPRHFQKDETVFARDDIPSRQRARVNEVRAWKQRSMALLPMG-RRPSFSLSTYVR-PVPQRCCLVLEKDQRSGFAYNYRAEVLLSKVPAPPPCRSKFSVCAVSTADISTCIALREAYPGNAVRHPKRTEELPVHPALAGKPAWNGSSVL 663
            L  K+ VG + +  +F  +E  FA  D+P   RA   +VR  K+ ++    +G RR  +++ST V  P+ +R    L   ++  F YNYR EVL    P+PPP      V A + A ++                 KRTEE+PVHP LAGK +W+ S+ L
Sbjct:   13 LTRKVVVGHATVKNNFGIEEKAFAPTDVPRSARAARKQVRELKRSNV----LGTRRDGWNVSTAVEEPLCRRSGRQLAAFEQREFEYNYRTEVL----PSPPPLEHDGVVFARTRAALAAT---------------KRTEEMPVHPGLAGKASWDRSTAL 149
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BLAST of mRNA_P-wetherbeei_contig1330.3.1 vs. uniprot
Match: F0WRR7_9STRA (Uncharacterized protein AlNc14C218G9063 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WRR7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.620e-9
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  172 TVSHRYLRSKLRVGSSHLPRHFQKDETVFARDDIPSRQRARVNEVRAWKQRSMALLPMGRRPSFSLSTYVRPVPQ---RCCLVLEKDQRSGFAYNYRAEVLLSKVPAPPPCRSKFSVCAVSTADISTCIALREAYPGNAVRHP-------KRTEELPVHPALAGKPAWNGS 654
            T+S + L+ K ++G+ +    F   +  F+ +D P+ + ++V E       S+ LL   ++P+++ STY     +   RC ++ E+ + + F YNYRAE L    P   P  ++F+V  +        +  ++  PG             K  EELP HP L+ K AWN S
Sbjct:    4 TMSMKRLQPKSQIGTKNTQNCFTIHDRAFSVNDAPTEKASQVRE-------SLQLLHESKKPAWNKSTYNEASSKDYKRCNMLAERGRTNLFVYNYRAEKLPRAYPVAMPKANRFNVGLLH-------LKYKDEIPGECFSDHRVARGIGKCVEELPNHPNLSAKAAWNAS 160
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BLAST of mRNA_P-wetherbeei_contig1330.3.1 vs. uniprot
Match: A0A024GFE7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GFE7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.210e-5
Identity = 38/120 (31.67%), Postives = 57/120 (47.50%), Query Frame = 1 
Query:  325 SMALLPMGRRPSFSLSTYVRPVPQ---RCCLVLEKDQRSGFAYNYRAEVLLSKVPAPPPCRSKFSVCAVSTADISTCIALREAYPGNAVRH-------PKRTEELPVHPALAGKPAWNGS 654
            S+ L    ++P +++STY   + +   RC  + E+ + + F YNYRAE L    P   P  ++F+V  +        +  ++  PG A           K  EELP HP L GK AWN S
Sbjct:   25 SLHLSHESKKPDWNISTYNEALEKDYKRCNTLAERGRTNLFVYNYRAEKLPRAYPVGIPKANQFNVGLLH-------LKYKDEIPGEAFSDHRIARGISKCIEELPNHPKLRGKLAWNAS 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1330.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZFI1_9STRA1.290e-1133.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1G460_9STRA1.810e-1034.38Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
F0WRR7_9STRA1.620e-928.07Uncharacterized protein AlNc14C218G9063 n=1 Tax=Al... [more]
A0A024GFE7_9STRA3.210e-531.67Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1330contigP-wetherbeei_contig1330:1945..3415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGL9
Model size907
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.75e-29
EggNOG OGs2B5M4@1|root,2S0JA@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_002700.1
Cds size813
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.7231605-CDS-P-wetherbeei_contig1330:1944..23911683185980.7231605-CDS-P-wetherbeei_contig1330:1944..2391Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1330 1945..2391 -
1683185980.7324398-CDS-P-wetherbeei_contig1330:2735..31011683185980.7324398-CDS-P-wetherbeei_contig1330:2735..3101Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1330 2736..3101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.740103-UTR-P-wetherbeei_contig1330:3101..31111683185980.740103-UTR-P-wetherbeei_contig1330:3101..3111Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1330 3102..3111 -
1683185980.750238-UTR-P-wetherbeei_contig1330:3332..34151683185980.750238-UTR-P-wetherbeei_contig1330:3332..3415Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1330 3333..3415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1330.3.1prot_P-wetherbeei_contig1330.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1330 1945..3101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1330.3.1

>prot_P-wetherbeei_contig1330.3.1 ID=prot_P-wetherbeei_contig1330.3.1|Name=mRNA_P-wetherbeei_contig1330.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=271bp
MTLAAAPSISTASASGSVPGTTPAAPTVSHRYLRSKLRVGSSHLPRHFQK
DETVFARDDIPSRQRARVNEVRAWKQRSMALLPMGRRPSFSLSTYVRPVP
QRCCLVLEKDQRSGFAYNYRAEVLLSKVPAPPPCRSKFSVCAVSTADIST
CIALREAYPGNAVRHPKRTEELPVHPALAGKPAWNGSSVLTPAERRAIAA
ADSATVAAAQQCAATRFGGAKGNAVATALPVRPYTSPETLYRLTEREARG
VRRVVRAAQAQEDGGAADARR
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mRNA from alignment at P-wetherbeei_contig1330:1945..3415-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1330.3.1 ID=mRNA_P-wetherbeei_contig1330.3.1|Name=mRNA_P-wetherbeei_contig1330.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1471bp|location=Sequence derived from alignment at P-wetherbeei_contig1330:1945..3415- (Phaeothamnion wetherbeei SAG_119_79)
CCTCCGGCCGTTCTGAGACGTTCTGACCGGACAGCGCGGTAGTTGCGTCT
TCGTTACCGACGCCAGTGTCTTCATTTCTTTCGGTGAGAAGGTTTTCCAC
GACGTGCCAAGCTCCTCCTCACGTCCAGCTCTCGCGCCTCTTCCCCTCGC
ACTCCGCCCGTAACTCTGAAGAGAAGAGAATGATTTATTCAGTATCTTGC
CATCTTTCATGCTAACACCTCTGGCAGGAGCTTTTCTTACCCCTTTGCAA
CTAAAGCCTTTTTTAAAGCATTTTTTCCCTCCTTCAAACCTTCCTTCTCG
GCAGAGGAAAGAGAATGACGCTGGCGGCGGCACCCTCGATCTCGACGGCG
TCCGCGTCCGGATCAGTGCCAGGGACGACGCCGGCGGCGCCGACCGTTTC
CCACCGGTACCTGAGGAGCAAACTGCGCGTCGGCTCCTCGCACCTTCCAA
GACATTTTCAAAAGGATGAAACGGTGTTCGCTCGCGACGACATCCCGTCA
CGCCAACGGGCCCGAGTTAACGAGGTACGGGCGTGGAAGCAGAGGAGCAT
GGCGCTACTGCCGATGGGACGCCGGCCCTCCTTCTCGCTGAGTACATACG
TGCGGCCGGTGCCGCAGCGGTGCTGTCTCGTTCTGGAGAAGGATCAGCGC
AGCGGTTTCGCCTACAACTATCGCGCCGAGGTAAGAGAAGGAGACGACAG
TGGCTTTCGGAATGAAAAGAAAAATGAAAGCGAAATCTTCCTGCATTTGT
CCATTTGTCTGGCTCCCCTATCGCCTGTTTCTTCCTTTCATCGTGTAGCA
TTTGGCTGGCGATGGCATATGAGGCAGCAATCTGGTCCAACTACCGACCC
TCCTGGGCCCACTGGCGGCCGCAGGGCCTCCTGTGCACCGCTCCGAAAGA
GCCGTCGGGCACGCAGCCGTCATCCATCTCTAACCTTCACCCACTCTCTT
AGTATTGCCATGGTGCGACGCCGGCGTCTCCTCCTCTTCCCCTGCCCGCT
TCTTCTCTCCTCTCGCCTGCCCAGGTTCTCCTCTCAAAGGTGCCGGCACC
GCCGCCGTGCCGCTCCAAGTTTAGCGTCTGCGCCGTCAGCACCGCCGACA
TTTCCACCTGCATCGCCCTGCGGGAGGCGTATCCAGGGAACGCCGTCCGC
CACCCCAAACGGACCGAAGAGCTCCCGGTGCATCCTGCGCTGGCCGGCAA
GCCGGCCTGGAACGGCAGCTCCGTGCTTACGCCTGCGGAGCGCCGCGCGA
TCGCCGCGGCTGACTCGGCTACCGTCGCGGCGGCGCAGCAGTGCGCCGCC
ACGCGTTTTGGGGGCGCCAAGGGCAACGCGGTGGCAACGGCGCTGCCAGT
GCGGCCGTACACGTCCCCGGAGACGCTGTACCGGCTGACGGAGCGGGAGG
CGCGCGGCGTCCGCCGGGTGGTCCGCGCGGCGCAAGCCCAGGAGGACGGC
GGCGCCGCCGATGCGCGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1330:1945..3415-

>mRNA_P-wetherbeei_contig1330.3.1 ID=mRNA_P-wetherbeei_contig1330.3.1|Name=mRNA_P-wetherbeei_contig1330.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=813bp|location=Sequence derived from alignment at P-wetherbeei_contig1330:1945..3415- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCTGGCGGCGGCACCCTCGATCTCGACGGCGTCCGCGTCCGGATC
AGTGCCAGGGACGACGCCGGCGGCGCCGACCGTTTCCCACCGGTACCTGA
GGAGCAAACTGCGCGTCGGCTCCTCGCACCTTCCAAGACATTTTCAAAAG
GATGAAACGGTGTTCGCTCGCGACGACATCCCGTCACGCCAACGGGCCCG
AGTTAACGAGGTACGGGCGTGGAAGCAGAGGAGCATGGCGCTACTGCCGA
TGGGACGCCGGCCCTCCTTCTCGCTGAGTACATACGTGCGGCCGGTGCCG
CAGCGGTGCTGTCTCGTTCTGGAGAAGGATCAGCGCAGCGGTTTCGCCTA
CAACTATCGCGCCGAGGTTCTCCTCTCAAAGGTGCCGGCACCGCCGCCGT
GCCGCTCCAAGTTTAGCGTCTGCGCCGTCAGCACCGCCGACATTTCCACC
TGCATCGCCCTGCGGGAGGCGTATCCAGGGAACGCCGTCCGCCACCCCAA
ACGGACCGAAGAGCTCCCGGTGCATCCTGCGCTGGCCGGCAAGCCGGCCT
GGAACGGCAGCTCCGTGCTTACGCCTGCGGAGCGCCGCGCGATCGCCGCG
GCTGACTCGGCTACCGTCGCGGCGGCGCAGCAGTGCGCCGCCACGCGTTT
TGGGGGCGCCAAGGGCAACGCGGTGGCAACGGCGCTGCCAGTGCGGCCGT
ACACGTCCCCGGAGACGCTGTACCGGCTGACGGAGCGGGAGGCGCGCGGC
GTCCGCCGGGTGGTCCGCGCGGCGCAAGCCCAGGAGGACGGCGGCGCCGC
CGATGCGCGGCGG
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