mRNA_P-wetherbeei_contig1330.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1330.2.1
Unique NamemRNA_P-wetherbeei_contig1330.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1330.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1330contigP-wetherbeei_contig1330:1209..1757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size549
Hectar predicted targeting categorysignal peptide
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.6452134-UTR-P-wetherbeei_contig1330:1208..12891683185980.6452134-UTR-P-wetherbeei_contig1330:1208..1289Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1330 1209..1289 -
1683185980.663104-UTR-P-wetherbeei_contig1330:1622..17571683185980.663104-UTR-P-wetherbeei_contig1330:1622..1757Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1330 1623..1757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.6544597-CDS-P-wetherbeei_contig1330:1289..16221683185980.6544597-CDS-P-wetherbeei_contig1330:1289..1622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1330 1290..1622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1330.2.1prot_P-wetherbeei_contig1330.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1330 1290..1622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1330.2.1

>prot_P-wetherbeei_contig1330.2.1 ID=prot_P-wetherbeei_contig1330.2.1|Name=mRNA_P-wetherbeei_contig1330.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=111bp
MASVVAAVMVATAALMKSAAEVAAAKMAAARAVRKVRRVAWRRRKRGWRR
EMGQCPAQQEGRQRQRRACADSHKLVGCGGCQLCKRAGPICFLNNRCLQM
RRCVVCKKAR*
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mRNA from alignment at P-wetherbeei_contig1330:1209..1757-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1330.2.1 ID=mRNA_P-wetherbeei_contig1330.2.1|Name=mRNA_P-wetherbeei_contig1330.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig1330:1209..1757- (Phaeothamnion wetherbeei SAG_119_79)
TGTTCGCGCCGAGCCCGTTCGACGAGGGCCGCATGGCTTGGAGCGACACG
GCCAGTTGCACGTTTGACTCTCCGGGAGACGTGCAGCGGTTCCGGGCCGT
CGGCACCGGTCACAGCCGGCCGATGAAGGCAATGCATGGCATCAGTAGTG
GCTGCGGTGATGGTGGCGACGGCAGCGCTGATGAAGTCGGCAGCGGAGGT
GGCAGCGGCCAAAATGGCGGCGGCGAGAGCTGTGCGAAAAGTCCGGAGGG
TCGCCTGGCGCCGGCGGAAGCGTGGTTGGCGCCGGGAGATGGGGCAATGT
CCGGCGCAGCAAGAGGGGCGGCAGAGGCAGCGAAGGGCGTGCGCTGATTC
CCACAAATTGGTCGGATGCGGCGGATGTCAATTGTGTAAGCGTGCCGGAC
CTATCTGTTTTCTTAATAATCGCTGTTTGCAAATGCGTAGATGTGTGGTG
TGCAAGAAGGCAAGATAGCGGCGACAACAAAGCTGCCGAAAGACGACCGC
AACGCGGCCTTAGGATAAATGAAATGCCACGTACAAGACTGAAAGAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1330:1209..1757-

>mRNA_P-wetherbeei_contig1330.2.1 ID=mRNA_P-wetherbeei_contig1330.2.1|Name=mRNA_P-wetherbeei_contig1330.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig1330:1209..1757- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATCAGTAGTGGCTGCGGTGATGGTGGCGACGGCAGCGCTGATGAA
GTCGGCAGCGGAGGTGGCAGCGGCCAAAATGGCGGCGGCGAGAGCTGTGC
GAAAAGTCCGGAGGGTCGCCTGGCGCCGGCGGAAGCGTGGTTGGCGCCGG
GAGATGGGGCAATGTCCGGCGCAGCAAGAGGGGCGGCAGAGGCAGCGAAG
GGCGTGCGCTGATTCCCACAAATTGGTCGGATGCGGCGGATGTCAATTGT
GTAAGCGTGCCGGACCTATCTGTTTTCTTAATAATCGCTGTTTGCAAATG
CGTAGATGTGTGGTGTGCAAGAAGGCAAGATAG
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