mRNA_P-wetherbeei_contig13295.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13295.1.1
Unique NamemRNA_P-wetherbeei_contig13295.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: A0A1F6VI37_9PROT (Uncharacterized protein n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_60_9 TaxID=1817755 RepID=A0A1F6VI37_9PROT)

HSP 1 Score: 177 bits (448), Expect = 4.750e-52
Identity = 82/146 (56.16%), Postives = 111/146 (76.03%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAG 438
            +TG +++HIPYKG APA++DLLGGQ+  +   LP+ L   ++G+ RALGVT+++RA  LPD PTIAEAGVPG+E +SW G+ APAG PK +VA+L+ +IVKA+  PDT++RL  QG +   NTPEQF  +I AE  KWAKV K++G
Sbjct:  179 LTGVDMVHIPYKGSAPAITDLLGGQVNLMFDNLPSALPHIKTGKLRALGVTSSKRAPALPDAPTIAEAGVPGFEATSWFGVFAPAGTPKEVVARLHKEIVKALNSPDTKERLSGQGADLIGNTPEQFAAYIAAETTKWAKVVKASG 324          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: A0A536YAM9_9PROT (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YAM9_9PROT)

HSP 1 Score: 173 bits (438), Expect = 1.100e-50
Identity = 82/150 (54.67%), Postives = 110/150 (73.33%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAGIAPE 450
            MTG  I+H+PYKGGA + +DL GGQ+  ++T +P  +   RSGR RALGV+TA+RA Q PDVP+I+E  VPGYEV+ W GLC P G+ +A+V ++NAD+V+A+  P+T QRL   G+E  P TPEQF +F+  E+AKWAKV + AGI  E
Sbjct:  168 MTGVNIVHVPYKGGAASSADLAGGQVQLVITNMPEQVAYIRSGRTRALGVSTAKRAPQFPDVPSISET-VPGYEVTVWYGLCGPGGMARALVERINADLVRAVTAPETTQRLSAVGIEPTPGTPEQFTDFVRGELAKWAKVIRDAGIPAE 316          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: A0A1F4E460_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4E460_9PROT)

HSP 1 Score: 170 bits (431), Expect = 5.000e-50
Identity = 86/151 (56.95%), Postives = 111/151 (73.51%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAG-LGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAGIAPE 450
            MTG  I+H+PYKG APAL+D++ G + + V  L  G LGA ++GR RALGVT+A+R  Q+PDVPT AE+GVPGYEV+ W G+C  + VP+ I+AKLNADI K +G P  ++RLEDQG+E AP T E F   + AEIAKW KV + AG+A E
Sbjct:  133 MTGINIVHVPYKGAAPALTDVMSGHMESSVGNLAGGPLGAIKAGRVRALGVTSAKRNVQIPDVPTFAESGVPGYEVTGWYGICTQSKVPQPILAKLNADINKLLGGP-LKKRLEDQGIEVAPATSEAFAAHVKAEIAKWTKVVREAGLAAE 282          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: UPI0019BD658F (Tripartite tricarboxylate transporter substrate binding protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019BD658F)

HSP 1 Score: 171 bits (432), Expect = 8.790e-50
Identity = 79/147 (53.74%), Postives = 108/147 (73.47%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAGI 441
            MT T ++HIPYKG AP +SDL+ GQ+  +   +P  +G  R+G+ RAL VTTA+R+ Q P++PT+AEAGVPGYE ++W G+ APAG P+ IV + NA+IVK +  PD ++R   QGVE   +TPEQFGEF+ AE+A+W KV + AGI
Sbjct:  167 MTRTYMLHIPYKGSAPVVSDLIAGQVDVMFDNMPNVIGHVRAGKLRALAVTTAQRSPQAPEIPTVAEAGVPGYEQTAWFGVLAPAGTPREIVNRYNAEIVKVLNSPDVKERFGKQGVEVRTSTPEQFGEFLRAEVARWGKVIREAGI 313          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: A0A1F4DWR9_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DWR9_9PROT)

HSP 1 Score: 170 bits (431), Expect = 1.690e-49
Identity = 77/146 (52.74%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAG 438
            M G +++H+PYKG  PA++DL+GGQ+  ++TG+ A +   +SG+ R LGVT+A+R A LPD+PTIAE+G+PG++VSSW G+  P G PK IVAK+NA+I K + +P+ RQRL  QG + A NTPE+F  ++ AE+AKW KVA+  G
Sbjct:  179 MAGIDVVHVPYKGTGPAITDLIGGQVQMMITGVVALMPHIKSGKLRGLGVTSAKRVAALPDLPTIAESGIPGFDVSSWFGVFLPGGTPKPIVAKMNAEIRKILEVPEVRQRLISQGADPASNTPEEFAAYVKAEMAKWGKVARDTG 324          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: F4GGM7_ALIDK (Uncharacterized protein n=5 Tax=Alicycliphilus TaxID=201096 RepID=F4GGM7_ALIDK)

HSP 1 Score: 170 bits (431), Expect = 1.780e-49
Identity = 79/146 (54.11%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAG 438
            MTGT+++H+PYKG APA++DLLGGQI  +   +P+ +   RSG+ R + VTTARR+ +LPDVPTIAEAGVPGYE  SW G+ APA  PK ++ KLNA +VK +  PD ++++ +QG +    TP QF  FI AE AKW KV K +G
Sbjct:  181 MTGTDLLHVPYKGSAPAMTDLLGGQISIMFDNMPSAIQHVRSGKLRPIAVTTARRSPELPDVPTIAEAGVPGYEAMSWFGMFAPAATPKPVLDKLNAALVKVLNQPDVKKKIAEQGGDVVAETPAQFAAFIKAESAKWGKVVKESG 326          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: A0A1F4E5F3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4E5F3_9PROT)

HSP 1 Score: 170 bits (430), Expect = 2.050e-49
Identity = 79/145 (54.48%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    4 TGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAG 438
            TG ++ H+PYKG +PA++ LLGG+I   V+ +P  L   ++GR +ALGVT+A+R A LPDVPTIAE+G+PGYEV++W G+  PAGVPK I+A+L+ +IV+ + +PD RQR   +G + APNTPEQF  FI +EIAKW K  K +G
Sbjct:  174 TGVKMTHVPYKGASPAITGLLGGEIAIYVSSIPPALPFMKAGRLKALGVTSAKRTATLPDVPTIAESGLPGYEVTNWYGVMVPAGVPKDILARLHTEIVRILQLPDVRQRFAGEGGDVAPNTPEQFAAFIRSEIAKWGKAVKDSG 318          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: A0A5C8NZ61_9BURK (Tripartite tricarboxylate transporter substrate binding protein n=2 Tax=Burkholderiaceae TaxID=119060 RepID=A0A5C8NZ61_9BURK)

HSP 1 Score: 169 bits (429), Expect = 3.740e-49
Identity = 83/146 (56.85%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAG 438
            MTGT + HIPY+G APA++DLL GQ+  +   LP+ +   RSG+ RAL VT+A+RA  LPDVPTIAEAGVPGYE SSW G+ APAG P+ IV KL   I K++  PD R++L  QG     N PE+F ++I AEIAKWAKV K++G
Sbjct:  183 MTGTFMTHIPYRGSAPAVADLLAGQVELMFDNLPSAMPHIRSGKLRALAVTSAKRAPALPDVPTIAEAGVPGYEASSWFGIVAPAGTPRPIVDKLQQQIAKSLAQPDVREKLLGQGANPVGNMPEEFAKYIQAEIAKWAKVVKASG 328          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: A0A328Z5E7_9BURK (Tripartite-type tricarboxylate transporter receptor subunit TctC n=1 Tax=Acidovorax anthurii TaxID=78229 RepID=A0A328Z5E7_9BURK)

HSP 1 Score: 168 bits (426), Expect = 1.320e-48
Identity = 79/146 (54.11%), Postives = 104/146 (71.23%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAG 438
            M   +++H+PYKG APA+SDLLG QI  +   +P+ +   R+G+ R L VTTARR+ +LPDVPTIAEAGVPGYE +SW G+ APAG P  ++A+LNA IVK +  PDT+++L +QG EA   TP QF +FI  E  KW KV K +G
Sbjct:  192 MARVDMVHVPYKGSAPAVSDLLGNQIAIMFDNMPSAIPHVRAGKLRPLAVTTARRSPELPDVPTIAEAGVPGYEATSWFGMFAPAGTPAPVIARLNATIVKVLAQPDTKKKLAEQGAEAYGETPAQFADFIQKESVKWGKVVKESG 337          
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Match: A0A2S5SU24_9BURK (MFS transporter n=1 Tax=Zhizhongheella caldifontis TaxID=1452508 RepID=A0A2S5SU24_9BURK)

HSP 1 Score: 168 bits (425), Expect = 1.340e-48
Identity = 78/146 (53.42%), Postives = 110/146 (75.34%), Query Frame = 1
Query:    1 MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGVTTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIVKAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAG 438
            MTG ++ H+PY+G APA+SDL+GGQ+ ++   +P+ L   + G+ RAL VT+A+R+A  PDVPT+AEAGVPGY+V SW GL AP G PKAIV KLNA++ KA+ +PD ++RL + G  A+P +P  + +FI AE+AKWA V K++G
Sbjct:  179 MTGVDMTHVPYRGSAPAISDLIGGQVQSMFDNMPSALPHVQGGKLRALAVTSAQRSAAAPDVPTLAEAGVPGYDVQSWFGLNAPKGTPKAIVDKLNAEVNKALALPDVQKRLAELGAVASPMSPAAYDKFIKAEVAKWAPVVKASG 324          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F6VI37_9PROT4.750e-5256.16Uncharacterized protein n=1 Tax=Candidatus Muprote... [more]
A0A536YAM9_9PROT1.100e-5054.67Tripartite tricarboxylate transporter substrate bi... [more]
A0A1F4E460_9PROT5.000e-5056.95Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
UPI0019BD658F8.790e-5053.74Tripartite tricarboxylate transporter substrate bi... [more]
A0A1F4DWR9_9PROT1.690e-4952.74Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
F4GGM7_ALIDK1.780e-4954.11Uncharacterized protein n=5 Tax=Alicycliphilus Tax... [more]
A0A1F4E5F3_9PROT2.050e-4954.48Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A5C8NZ61_9BURK3.740e-4956.85Tripartite tricarboxylate transporter substrate bi... [more]
A0A328Z5E7_9BURK1.320e-4854.11Tripartite-type tricarboxylate transporter recepto... [more]
A0A2S5SU24_9BURK1.340e-4853.42MFS transporter n=1 Tax=Zhizhongheella caldifontis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13295contigP-wetherbeei_contig13295:197..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog596153.Alide_3510
PFAMsTctC
Model size453
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.92e-50
EggNOG OGsCOG3181@1|root,COG3181@2|Bacteria,1MU58@1224|Proteobacteria,2VHK8@28216|Betaproteobacteria,4A9R8@80864|Comamonadaceae
DescriptionPFAM conserved
Cds size453
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.213245-CDS-P-wetherbeei_contig13295:196..6491683185980.213245-CDS-P-wetherbeei_contig13295:196..649Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13295 197..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13295.1.1prot_P-wetherbeei_contig13295.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13295 197..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13295.1.1

>prot_P-wetherbeei_contig13295.1.1 ID=prot_P-wetherbeei_contig13295.1.1|Name=mRNA_P-wetherbeei_contig13295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
MTGTEIIHIPYKGGAPALSDLLGGQIPALVTGLPAGLGAARSGRARALGV
TTARRAAQLPDVPTIAEAGVPGYEVSSWVGLCAPAGVPKAIVAKLNADIV
KAIGMPDTRQRLEDQGVEAAPNTPEQFGEFIVAEIAKWAKVAKSAGIAPE
*
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mRNA from alignment at P-wetherbeei_contig13295:197..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13295.1.1 ID=mRNA_P-wetherbeei_contig13295.1.1|Name=mRNA_P-wetherbeei_contig13295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig13295:197..649+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGGGACCGAGATCATCCACATTCCCTACAAGGGCGGTGCGCCGGC GCTCTCCGACCTGCTCGGCGGGCAGATACCCGCGCTGGTCACCGGCTTGC CCGCGGGCCTCGGCGCGGCCCGCTCGGGCCGGGCGCGTGCGCTCGGCGTG ACGACCGCCAGGCGCGCCGCGCAGTTGCCCGACGTGCCCACCATCGCGGA AGCCGGCGTGCCCGGCTACGAGGTGTCGAGCTGGGTGGGCCTGTGCGCGC CGGCCGGCGTGCCGAAGGCCATCGTCGCGAAGCTCAATGCCGACATCGTC AAGGCGATCGGCATGCCGGACACCAGGCAGAGGCTCGAGGACCAGGGCGT AGAGGCGGCGCCCAACACGCCCGAACAGTTCGGCGAATTCATCGTGGCGG AGATCGCGAAGTGGGCGAAGGTGGCGAAGTCCGCGGGCATCGCGCCCGAA TAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13295:197..649+

>mRNA_P-wetherbeei_contig13295.1.1 ID=mRNA_P-wetherbeei_contig13295.1.1|Name=mRNA_P-wetherbeei_contig13295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig13295:197..649+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGGGACCGAGATCATCCACATTCCCTACAAGGGCGGTGCGCCGGC
GCTCTCCGACCTGCTCGGCGGGCAGATACCCGCGCTGGTCACCGGCTTGC
CCGCGGGCCTCGGCGCGGCCCGCTCGGGCCGGGCGCGTGCGCTCGGCGTG
ACGACCGCCAGGCGCGCCGCGCAGTTGCCCGACGTGCCCACCATCGCGGA
AGCCGGCGTGCCCGGCTACGAGGTGTCGAGCTGGGTGGGCCTGTGCGCGC
CGGCCGGCGTGCCGAAGGCCATCGTCGCGAAGCTCAATGCCGACATCGTC
AAGGCGATCGGCATGCCGGACACCAGGCAGAGGCTCGAGGACCAGGGCGT
AGAGGCGGCGCCCAACACGCCCGAACAGTTCGGCGAATTCATCGTGGCGG
AGATCGCGAAGTGGGCGAAGGTGGCGAAGTCCGCGGGCATCGCGCCCGAA
TAG
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