mRNA_P-wetherbeei_contig1329.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1329.1.1
Unique NamemRNA_P-wetherbeei_contig1329.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A397B5B3_9STRA (2-oxogl_dehyd_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B5B3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.920e-30
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   31 ARALSSAATSPDTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            ARA SS+    ++F+ G+N++YVEEMY  W KDP+SVHKSWDVYF+ +D+G +P  +F+PPP V    T V A +   A+ A+ D   + +LG++YLIRAYQ RGHE A LDPLG+
Sbjct:   27 ARAFSSSPHPSESFLSGTNNVYVEEMYKTWSKDPTSVHKSWDVYFRQVDQGAVPGEAFIPPPTVQSGVTPV-ARSAAAAVNASTDI--NHALGLSYLIRAYQSRGHEVAKLDPLGL 139          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A2P4XIG5_9STRA (Oxoglutarate dehydrogenase (Succinyl-transferring), E1 component (Fragment) n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XIG5_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.320e-30
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   34 RALSSAATSPDTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            RA SS     +TFM G+N+ YVEEMY  W+ +PSSVHKSWDVYF+ ++ G +P  +F+PPP + +  T V +  G VA    +    +D+LG++YLIRAYQVRGHE ANLDPLG+
Sbjct:   40 RAFSSTPHPSETFMTGTNNAYVEEMYSNWKSNPSSVHKSWDVYFRQIESGSVPGEAFIPPPTIQQGVTPVRSVGGAVA----SSTEQNDALGLSYLIRAYQVRGHEAANLDPLGL 150          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A835Z9M1_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9M1_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.380e-30
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 1
Query:   76 QGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRG-LLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            QG NS+YVE MY AW+ DPSSVHKSWD YF+++D+G +  + +FV PPRVLEVPTA  AAA     P+      SDSLG++YLIRAYQVRGHE A LDPLG+
Sbjct:   20 QGPNSIYVESMYSAWKSDPSSVHKSWDAYFKSIDKGQVASQGAFVAPPRVLEVPTAHTAAA-----PSGTPQTVSDSLGLSYLIRAYQVRGHEAAKLDPLGL 116          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A7S0SWS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWS4_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.690e-29
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   55 TSPDTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            T  D+F+ GSNS+YVE+MY +WR DP+SVH SW  YF+ +D G+    +F PPP ++   + +      V L A +  +ASDSLG++YLI +YQVRGHEKANLDPLG+
Sbjct:   36 TKTDSFLSGSNSVYVEQMYESWRNDPNSVHSSWSSYFKNLDSGIEASSAFTPPPTLVGSISNI----ANVKLAADSSPIASDSLGLSYLIHSYQVRGHEKANLDPLGL 139          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: D7FKZ0_ECTSI (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ0_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 5.180e-29
Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 1
Query:   73 MQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            MQGSNSLYVEEMY AW+ DP SVHKSWDVYF+  D G     +F  PPRVLEVP+   +     A P+  +   SDSL ++YLIRAYQV+GHE ANLDPLG+
Sbjct:    1 MQGSNSLYVEEMYEAWKVDPGSVHKSWDVYFRHSDAGKDATAAFTAPPRVLEVPSMAASLPAVAAAPSVGEQ--SDSLSVSYLIRAYQVQGHEAANLDPLGL 100          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A2D4CF32_PYTIN (Purple acid phosphatase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF32_PYTIN)

HSP 1 Score: 119 bits (298), Expect = 9.760e-29
Identity = 63/123 (51.22%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   19 PMAVARALSSAATSP---DTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            P+A +    S+AT+P   + F+ G+N+ YVEEMY +W+ DPSSVHKSWDVYF+ ++RG +P  +F+PPP +    T V + A       AA    +D+LG++YLIRAYQVRGHE ANLDPLG+
Sbjct:    7 PVASSLRTFSSATTPHASEMFLTGTNNAYVEEMYSSWKTDPSSVHKSWDVYFRQIERGAVPGEAFIPPPTIQSGVTPVVSTAAS-----AASLDHNDALGLSYLIRAYQVRGHEAANLDPLGL 124          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A2D4BHY1_PYTIN (Oxoglutarate dehydrogenase (succinyl-transferring) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHY1_PYTIN)

HSP 1 Score: 119 bits (298), Expect = 1.010e-28
Identity = 63/123 (51.22%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   19 PMAVARALSSAATSP---DTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            P+A +    S+AT+P   + F+ G+N+ YVEEMY +W+ DPSSVHKSWDVYF+ ++RG +P  +F+PPP +    T V + A       AA    +D+LG++YLIRAYQVRGHE ANLDPLG+
Sbjct:   31 PVASSLRTFSSATTPHASEMFLTGTNNAYVEEMYSSWKTDPSSVHKSWDVYFRQIERGAVPGEAFIPPPTIQSGVTPVVSTAAS-----AASLDHNDALGLSYLIRAYQVRGHEAANLDPLGL 148          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A485LMZ0_9STRA (Oxoglutarate dehydrogenase (succinyl-transferring) n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LMZ0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.480e-28
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   34 RALSSAATSPDTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            RA SS+    +TF+ G+N++YVEEMY  W KDP SVHKSWDVYF+ +D+G +P  +F+PPP V    T  P A    A+ ++ D   + SLG++YLIRAYQ RGHE ANLDPLG+
Sbjct:   24 RAFSSSPHPSETFLSGTNNVYVEEMYKTWTKDPKSVHKSWDVYFRQIDQGAVPGEAFIPPPTVQTGVT--PVARSTSAVASSTDV--NHSLGLSYLIRAYQSRGHEVANLDPLGL 134          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A3R7B999_9STRA (2-oxogl_dehyd_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7B999_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.120e-28
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   31 ARALSSAATSPDTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            ARA SS+    ++F+ G+N++YVEEMY  W KDP+SVHKSWDVYF+ +D+G +P  +F+PPP V    T V A +   A+ A+ D   + +LG++YLIRAYQ RGHE A LDPLG+
Sbjct:   27 ARAFSSSPHPSESFLSGTNNVYVEEMYKTWSKDPTSVHKSWDVYFRQVDQGAVPGEAFIPPPTVQSGVTPV-ARSAAAAVNASTDI--NHALGLSYLIRAYQSRGHEVAKLDPLGL 139          
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Match: A0A3L6VYH6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A3L6VYH6_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.250e-28
Identity = 61/116 (52.59%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   31 ARALSSAATSPDTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQAMDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYLIRAYQVRGHEKANLDPLGI 378
            ARA SS+    ++F+ G+N++YVEEMY  W KDP+SVHKSWDVYF+ +D+G +P  +F+PPP V    T V A +   A+ A+ D   + +LG++YLIRAYQ RGHE A LDPLG+
Sbjct:   27 ARAFSSSPHPSESFLSGTNNVYVEEMYKTWSKDPTSVHKSWDVYFRQVDQGAVPGEAFIPPPTVQSGVTPV-ARSAAAAVNASTDI--NHALGLSYLIRAYQSRGHEVAKLDPLGL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1329.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397B5B3_9STRA3.920e-3052.592-oxogl_dehyd_N domain-containing protein n=1 Tax=... [more]
A0A2P4XIG5_9STRA4.320e-3053.04Oxoglutarate dehydrogenase (Succinyl-transferring)... [more]
A0A835Z9M1_9STRA4.380e-3062.75Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A7S0SWS4_9STRA1.690e-2951.85Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
D7FKZ0_ECTSI5.180e-2960.78Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A2D4CF32_PYTIN9.760e-2951.22Purple acid phosphatase n=1 Tax=Pythium insidiosum... [more]
A0A2D4BHY1_PYTIN1.010e-2851.22Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A485LMZ0_9STRA2.480e-2853.91Oxoglutarate dehydrogenase (succinyl-transferring)... [more]
A0A3R7B999_9STRA4.120e-2852.592-oxogl_dehyd_N domain-containing protein (Fragmen... [more]
A0A3L6VYH6_9STRA5.250e-2852.59Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1329contigP-wetherbeei_contig1329:2932..4317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_16966T0
PFAMs2-oxogl_dehyd_N,E1_dh,OxoGdeHyase_C,Transket_pyr
Model size378
Max annot lvl4776|Peronosporales
KEGG rclassRC00004,RC00027,RC00627,RC02743,RC02833,RC02883
KEGG koko:K00164
KEGG ReactionR00621,R01933,R01940,R03316,R08549
KEGG Pathwayko00020,ko00310,ko00380,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00310,map00380,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00032
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.02e-31
EggNOG OGsCOG0567@1|root,KOG0450@2759|Eukaryota,3QE1R@4776|Peronosporales
EC1.2.4.2
Description2-oxoglutarate dehydrogenase N-terminus
Cds size357
COG categoryG
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.0173237-UTR-P-wetherbeei_contig1329:2931..29521683185980.0173237-UTR-P-wetherbeei_contig1329:2931..2952Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1329 2932..2952 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185980.0261924-CDS-P-wetherbeei_contig1329:2952..30681683185980.0261924-CDS-P-wetherbeei_contig1329:2952..3068Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1329 2953..3068 +
1683185980.0334353-CDS-P-wetherbeei_contig1329:3427..36261683185980.0334353-CDS-P-wetherbeei_contig1329:3427..3626Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1329 3428..3626 +
1683185980.0403929-CDS-P-wetherbeei_contig1329:4275..43171683185980.0403929-CDS-P-wetherbeei_contig1329:4275..4317Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1329 4276..4317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1329.1.1prot_P-wetherbeei_contig1329.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1329 2953..4317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1329.1.1

>prot_P-wetherbeei_contig1329.1.1 ID=prot_P-wetherbeei_contig1329.1.1|Name=mRNA_P-wetherbeei_contig1329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
MAVARALSSAATSPDTFMQGSNSLYVEEMYHAWRKDPSSVHKSWDVYFQA
MDRGLLPEHSFVPPPRVLEVPTAVPAAAGQVALPAAADAMASDSLGIAYL
IRAYQVRGHEKANLDPLGI
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mRNA from alignment at P-wetherbeei_contig1329:2932..4317+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1329.1.1 ID=mRNA_P-wetherbeei_contig1329.1.1|Name=mRNA_P-wetherbeei_contig1329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1386bp|location=Sequence derived from alignment at P-wetherbeei_contig1329:2932..4317+ (Phaeothamnion wetherbeei SAG_119_79)
CGAAAATCTGCAACAGTGCCTATGGCTGTCGCCCGGGCGTTGTCAAGTGC CGCCACAAGCCCCGACACATTCATGCAGGGCTCAAATAGCTTGTACGTCG AGGAGATGTATCATGCATGGCGCAAGGACCCGAGCAGGTGAGCATCGGAC TTTGCCTTGGATTCTCTGAGAATGGAGGACCGAGAGTCTGTGTCGCATGG ATATGTATCCTGTTCAGTATTAGGCAGTCGCGGCCGCAACGGCGAGAAAG CTAATATCTAGGTCCGCATCGAACGCGTCCTTTCTCACCGTTGCCATGTA CCCTTTGAGAGGCCAGCATCTCCATCCAAAATAGAGCGACGTTCCCCAGC AGATGTGTCATCGCAGCCCGTATGCAATTAAGTTCTGCTTAACCTCACCT GCAGTGTCCCCATTGGAAACGGCGTTGCCTTCACTCCCTTATCTGCCGTG AACTCTGAAGTGATCATACGCCCCGACCCGTCGCCTGTCCGTGCAGCGTT CACAAGAGCTGGGACGTTTACTTTCAGGCAATGGACCGCGGGCTGCTGCC GGAGCACTCGTTCGTGCCGCCACCGCGTGTGCTTGAAGTGCCGACGGCAG TCCCTGCGGCGGCAGGGCAGGTGGCACTGCCGGCGGCGGCCGACGCCATG GCCAGCGACTCGCTGGGCATCGCCTATCTCATCCGGGCCTACCAGGTGCG TGCATGTCATGAAACTTCTTAGTTTCTGATTAGGTTCCCTCCGCTTCTCT CGGTTTCCTGAGTTTCTCCTGTTTACTGTTTTGTACGTGTCTGGTAGCGA TGTTCGGTGAGCTGGTATACGTCCCTTGGGCGGTTGTGCCAGCTGTTCTG GCCGCAAGAGGGCTCGCTGTACATTGGGCGGTGTTAAGCCTGTTCAATTC GTTGCTGCAATTCTTTATCGCATCGTGTCGCAGAATTTGAGACTGCGAAG GAAGGAACTCTGTGCCCTTATCTACTGCTATCTCGAGCCGCTAGATACGT TTCCAGATTCGAGCAGTCAAATGCAGCGCCTGCTTTGCATTCGCGGAAGA TGTGCTCGATCGTGTCCCTCAATGCCCTCTGCACTCTCTTGGGGATATCT GCCCGCATGTCTTATCTTTTCATCGAATCACCCTTGGCGGCTGACGACGA CGACTGACGGCGACGGCTGGCGGCGACGGCTGGTGGCAATTTCTTCTGGC GGCGACGGCCGGCGGCAACGGTTGGACGGTCGGAAAAACTGGCGCCTGGT GTGCTGCGGGGACGGGCGTGGCAAATGTGTCGGGCGAATTCCGGATGGAT GATGGATGGACGCCACAAACGATTGACGGATGCACTGCCTGCAGGTGCGC GGCCACGAGAAGGCCAACCTGGACCCGCTGGGGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1329:2932..4317+

>mRNA_P-wetherbeei_contig1329.1.1 ID=mRNA_P-wetherbeei_contig1329.1.1|Name=mRNA_P-wetherbeei_contig1329.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig1329:2932..4317+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGTCGCCCGGGCGTTGTCAAGTGCCGCCACAAGCCCCGACACATT
CATGCAGGGCTCAAATAGCTTGTACGTCGAGGAGATGTATCATGCATGGC
GCAAGGACCCGAGCAGCGTTCACAAGAGCTGGGACGTTTACTTTCAGGCA
ATGGACCGCGGGCTGCTGCCGGAGCACTCGTTCGTGCCGCCACCGCGTGT
GCTTGAAGTGCCGACGGCAGTCCCTGCGGCGGCAGGGCAGGTGGCACTGC
CGGCGGCGGCCGACGCCATGGCCAGCGACTCGCTGGGCATCGCCTATCTC
ATCCGGGCCTACCAGGTGCGCGGCCACGAGAAGGCCAACCTGGACCCGCT
GGGGATC
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