mRNA_P-wetherbeei_contig13252.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13252.1.1
Unique NamemRNA_P-wetherbeei_contig13252.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A6H5KUG3_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG3_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 8.950e-93
Identity = 128/179 (71.51%), Postives = 149/179 (83.24%), Query Frame = 3
Query:  408 EWWARDGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKIS-RLYRPYHRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAGLVE 941
            EWW RDGK D K+YG SL LAL+ R+  +EPRFIPSLSMFPTFEI DQLAV+K+S +L RPY R+DVVVF PPP F E+S RG   ALIKR++AV GD VQ++ G L++NGQEQ ED+TFEEPEY WGP  VP G +MVLGDNRNHSLDSHIWGFLPT+NVIGRA+F+YWPPWRAG +E
Sbjct:   32 EWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDVVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIE 210          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: D8LS42_ECTSI (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS42_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 7.340e-92
Identity = 128/179 (71.51%), Postives = 149/179 (83.24%), Query Frame = 3
Query:  408 EWWARDGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKIS-RLYRPYHRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAGLVE 941
            EWW RDGK D K+YG SL LAL+ R+  +EPRFIPSLSMFPTFEI DQLAV+K+S +L RPY R+DVVVF PPP F E+S RG   ALIKR++AV GD VQ++ G L++NGQEQ ED+TFEEPEY WGP  VP G +MVLGDNRNHSLDSHIWGFLPT+NVIGRA+F+YWPPWRAG +E
Sbjct:  105 EWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIE 283          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A7S2S8J5_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J5_9STRA)

HSP 1 Score: 259 bits (663), Expect = 9.790e-83
Identity = 133/219 (60.73%), Postives = 164/219 (74.89%), Query Frame = 3
Query:  297 GGFPRRPPLRCSKNDADDAAEDKDKEGEKGD-LMSRAAEWWA-RDGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEYSSRGTDA-ALIKRIVAVAGDEVQVR-GGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAGLVE 941
            GG  R PP+    N  + ++++  K+G   D L ++A  WWA  D + + K Y VSLGLALLFR FI+EPRFIPSLSMFPTF++ DQLAV+KIS++ RPY R DVVVFTPP AF +    GT   ALIKR+VAVAGD V+++ GG LY+NG  Q E FT E+  Y+WGP +VPAG +MVLGDNRNHSLDSH+WGFLP +NVIGRAVF+YWP WR GL+E
Sbjct:   42 GGNGRLPPIGRRGNAPEGSSDEGAKDGNVDDSLQAKAQRWWADEDLRAEVKSYTVSLGLALLFRAFIVEPRFIPSLSMFPTFDVGDQLAVDKISKVVRPYERNDVVVFTPPQAFFDVMGSGTKKEALIKRVVAVAGDVVEMKDGGTLYVNGVPQPEGFTNEKAFYDWGPREVPAGMLMVLGDNRNHSLDSHVWGFLPKENVIGRAVFKYWPVWRLGLIE 260          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A836CAW9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW9_9STRA)

HSP 1 Score: 251 bits (642), Expect = 3.180e-81
Identity = 115/150 (76.67%), Postives = 131/150 (87.33%), Query Frame = 3
Query:  492 MEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAGLVE 941
            MEPR+IPSLSMFPTFE+ DQLAVEK++R YRPY R DVVVF PP AF+ +S+RGTD ALIKRIVAV GD VQ+RGG++Y+NGQ Q E F  ++PEYEWGPM VPAG +MVLGDNRNHSLDSHIWGFLP +NVIGRAVF+YWPPWRAG VE
Sbjct:    1 MEPRYIPSLSMFPTFEVGDQLAVEKVTRYYRPYSRHDVVVFYPPEAFSLFSARGTDEALIKRIVAVEGDTVQIRGGKVYLNGQAQDEPFVTDKPEYEWGPMVVPAGKVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGAVE 150          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A6T5N089_HETAK (Mitochondrial inner membrane protease subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N089_HETAK)

HSP 1 Score: 254 bits (648), Expect = 2.130e-80
Identity = 131/228 (57.46%), Postives = 170/228 (74.56%), Query Frame = 3
Query:  291 SGGGFPRRPPLRCSK---NDADDAAEDKDKEGEKGDLMSRAAEW--------WAR--DGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVR-GGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932
            SG G   RP L+ +    NDAD+  +D +K GEK    + A           WA+  +GKED ++YG SL +AL+ RTF++EPR+IPSLSM+PTF+I DQLAV+K+S++ RPY RRDVVVFTPP AF+ +S R  +A LIKR+VAVAGD V+++ GG L+ING++Q E +T E+  YEWGP  VP G ++VLGDNRNHSLD H+WGFLPT+N+IGRAVF+YWPPWRAG
Sbjct:   42 SGNGNFNRPSLKLNALGTNDADE--DDNEKRGEKSAAGNGAESSNPLAGLINWAQSEEGKEDLRIYGTSLAVALVLRTFVVEPRWIPSLSMYPTFDIGDQLAVDKLSKVARPYQRRDVVVFTPPDAFSIFSDRRGEA-LIKRVVAVAGDVVEIKDGGHLFINGEKQEEKYTNEDALYEWGPQTVPKGCVLVLGDNRNHSLDGHVWGFLPTENIIGRAVFKYWPPWRAG 266          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: B8BZJ0_THAPS (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ0_THAPS)

HSP 1 Score: 240 bits (612), Expect = 3.390e-76
Identity = 117/179 (65.36%), Postives = 140/179 (78.21%), Query Frame = 3
Query:  408 EWWARD-GKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEY---SSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932
            EW+A D GKED K Y VSLG+ALL R  I+EPR+IPSLSMFPTFE+ DQLAVEK+++  RP+ R +VVVF PP  F E    +SR    ALIKRIVA  GD+V+V GG+L++NG EQ E FT E+ EY++GP+ VP G ++VLGDNRNHSLD HIWGFLPT+NVIGRAVF YWPPWR G
Sbjct:    1 EWFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRIRPFSRNEVVVFHPPMKFREIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCG 179          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: K0S0N9_THAOC (Mitochondrial inner membrane protease subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S0N9_THAOC)

HSP 1 Score: 238 bits (608), Expect = 3.760e-74
Identity = 113/185 (61.08%), Postives = 142/185 (76.76%), Query Frame = 3
Query:  390 LMSRAAEWWA-RDGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEY---SSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932
               +  EW+A  +GKED + Y  SLG+ALL R  I+EPR+IPSLSM+PTFE+ DQLAVEK+++  RP +R +VVVF PP +F E    +SR    ALIKRIVA  GD+V+V GG+L++NG+EQ E FT E+ +YE+GP+ VPAG ++VLGDNRNHSLD HIWGFLP +NVIGRAVF YWPPWR G
Sbjct:   97 FFEQVQEWFASEEGKEDVRTYTTSLGIALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIRPLNRNEVVVFNPPTSFKEIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGKEQDEPFTAEDAQYEFGPVLVPAGEVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A448Z2B4_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2B4_9STRA)

HSP 1 Score: 232 bits (592), Expect = 6.750e-73
Identity = 112/189 (59.26%), Postives = 141/189 (74.60%), Query Frame = 3
Query:  390 LMSRAAEWWARD-GKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAE-----YSSRGTDA--ALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932
             + +  +WW  D G++D K Y VSLG+ALL R  I+EPR+IPSLSM+PTFE+ DQLAVEK+++  +P +R +VVVF PP +F +     Y      A  ALIKRIVA+ GDEV+V+ G+LY+NG EQ E FT E+ EYE+GP+ VP G ++VLGDNRNHSLD HIWGFLP +NVIGRAVF YWPPWR G
Sbjct:   10 FVDQLGDWWNSDEGRDDVKTYFVSLGIALLLRFTIVEPRYIPSLSMYPTFEVGDQLAVEKVTKRIKPLYRDEVVVFNPPQSFRDIMVDKYGQNAARAREALIKRIVAIEGDEVEVKMGKLYVNGDEQDEPFTAEDAEYEFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPKENVIGRAVFVYWPPWRVG 198          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A6V1AJW1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V1AJW1_9STRA)

HSP 1 Score: 235 bits (599), Expect = 8.550e-73
Identity = 116/186 (62.37%), Postives = 142/186 (76.34%), Query Frame = 3
Query:  390 LMSRAAEWWARD-GKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEY---SSRGTDAALIKRIVAVAGDEVQVR-GGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932
               +  EW+A D GKED K Y VSL +ALL R  I+EPR+IPSLSM+PTFE+ DQLAVEK+++  RP++R +VVVF PP  F E    SSR +  ALIKRIVAV GD V+V+ GG+L++NG +Q E FT E+ EYE+GP+ VP G ++VLGDNRNHSLD HIWGFLP +NVIGRAVF YWPPWR G
Sbjct:   96 FFEQIQEWFASDEGKEDVKTYTVSLSVALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIRPFNRNEVVVFNPPERFRELVGESSRKSKEALIKRIVAVEGDTVEVKMGGKLFVNGVQQDEPFTAEDAEYEFGPVIVPPGDVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281          
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A7S4ABF9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABF9_9STRA)

HSP 1 Score: 233 bits (593), Expect = 4.570e-72
Identity = 130/269 (48.33%), Postives = 168/269 (62.45%), Query Frame = 3
Query:  162 LLLTGVRICEAWVLRSSGPRCASRAGLGAPRVISTVPPSV----GGGSGGGFPRRPPLRCSKNDADDAAEDKDKEGEKGDLMSRAAEWWARD-GKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEY--SSRGTDAA-----LIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932
            +L++ V I EA+  R+     AS   L     IS  P S+     G +     +  P + S +D +            G ++     WW  D G++D K Y VSLG+ALL R  I+EPR+IPSLSM+PTFE+ DQLAVEK+++  +P++R +VVVF PP  F +      G D+A     LIKRIVA+ GDEV+V+ G+LYING EQ E FT E+ EYE+GP+ VP   ++VLGDNRNHSLD HIWGFLP  NVIGRAVF YWPPWR G
Sbjct:   14 ILISTVHISEAFQSRAP----ASAVSLSLSHRISKQPKSILQTPNGVNNNHVGQLKPSQLSMSDKNSG----------GSILDELGAWWNSDEGRDDVKTYFVSLGIALLLRFTIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIKPFYREEVVVFNPPQGFRDVMVGKYGQDSARAKEALIKRIVAIEGDEVEVKQGKLYINGDEQDEPFTAEDAEYEFGPVVVPPENVLVLGDNRNHSLDGHIWGFLPKQNVIGRAVFIYWPPWRVG 268          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUG3_9PHAE8.950e-9371.51Mitochondrial inner membrane protease subunit n=1 ... [more]
D8LS42_ECTSI7.340e-9271.51Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S2S8J5_9STRA9.790e-8360.73Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A836CAW9_9STRA3.180e-8176.67Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6T5N089_HETAK2.130e-8057.46Mitochondrial inner membrane protease subunit n=1 ... [more]
B8BZJ0_THAPS3.390e-7665.36Mitochondrial inner membrane protease subunit (Fra... [more]
K0S0N9_THAOC3.760e-7461.08Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A448Z2B4_9STRA6.750e-7359.26Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A6V1AJW1_9STRA8.550e-7362.37Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A7S4ABF9_9STRA4.570e-7248.33Mitochondrial inner membrane protease subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13252contigP-wetherbeei_contig13252:26..1587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LS42
Preferred nameTPP1
PFAMsPeptidase_S24,Peptidase_S26
Model size941
Max annot lvl2759|Eukaryota
KEGG koko:K03100
KEGG Pathwayko02024,ko03060,map02024,map03060
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006465,GO:0006508,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016020,GO:0016043,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0051604,GO:0055035,GO:0061024,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564
Exons3
Evalue2.27e-93
EggNOG OGsCOG0681@1|root,KOG0171@2759|Eukaryota
EC3.4.21.89
Descriptionserine-type peptidase activity
Cds size801
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185979.1471865-UTR-P-wetherbeei_contig13252:25..1651683185979.1471865-UTR-P-wetherbeei_contig13252:25..165Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13252 26..165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185979.1572213-CDS-P-wetherbeei_contig13252:165..6871683185979.1572213-CDS-P-wetherbeei_contig13252:165..687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13252 166..687 +
1683185979.1653228-CDS-P-wetherbeei_contig13252:926..10101683185979.1653228-CDS-P-wetherbeei_contig13252:926..1010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13252 927..1010 +
1683185979.175536-CDS-P-wetherbeei_contig13252:1392..15871683185979.175536-CDS-P-wetherbeei_contig13252:1392..1587Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13252 1393..1587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13252.1.1prot_P-wetherbeei_contig13252.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13252 166..1587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13252.1.1

>prot_P-wetherbeei_contig13252.1.1 ID=prot_P-wetherbeei_contig13252.1.1|Name=mRNA_P-wetherbeei_contig13252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MKVSGVVLLLTGVRICEAWVLRSSGPRCASRAGLGAPRVISTVPPSVGGG
SGGGFPRRPPLRCSKNDADDAAEDKDKEGEKGDLMSRAAEWWARDGKEDA
KVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPY
HRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQ
EQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVI
GRAVFRYWPPWRAGLVE
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mRNA from alignment at P-wetherbeei_contig13252:26..1587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13252.1.1 ID=mRNA_P-wetherbeei_contig13252.1.1|Name=mRNA_P-wetherbeei_contig13252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1562bp|location=Sequence derived from alignment at P-wetherbeei_contig13252:26..1587+ (Phaeothamnion wetherbeei SAG_119_79)
ATACGTGTTGCACACCCCGCCAGAGGTGCCCCCGCCTTGGTTTCCAAAAG TTTTCGCTCCGTCCGACGGAATCCAAGCACCTCTGAATCCTGTAAGAGCG GAAGTGTCCCGGACGCACTCCTGCTGCAGCACCACAAAAAATGAAGGTCT CCGGCGTTGTTCTTCTCCTGACCGGTGTCAGAATATGTGAGGCGTGGGTC TTGCGCTCTTCAGGCCCAAGATGCGCCTCACGGGCTGGCCTGGGTGCTCC ACGAGTGATATCGACGGTGCCACCGAGCGTAGGAGGAGGCTCAGGAGGTG GCTTCCCACGGCGGCCACCGCTGCGCTGCAGCAAGAACGACGCCGACGAC GCCGCCGAGGATAAAGATAAGGAAGGAGAGAAGGGAGACCTCATGTCGCG TGCTGCGGAGTGGTGGGCGCGTGACGGCAAGGAAGACGCGAAGGTGTACG GGGTGTCGCTGGGGCTGGCGCTCCTCTTTCGCACCTTCATCATGGAGCCG CGGTTCATCCCGTCGCTCTCCATGTTTCCCACCTTTGAGATCAATGACCA ACTCGCCGTAGAGAAGATCTCCCGGCTGTACCGCCCGTACCACCGCCGCG ACGTCGTCGTCTTCACTCCGCCGCCGGCTTTTGCAGAGTACTCCAGCCGC GGCACCGATGCGGTGAGCGAGCTCGTAAAAGGGAGCAAGCAGAAAGATAC ACGGAGTTTGTTACTTTTCTGGATAGAGATGGCGGTGGAATGCAGCAGTG AGGCAGAGCCTTGCTTTCTCCTCCTTTCGTTATAGCTTAAATTTGCTGCA GGAAACTGCATGTTTCAGGGCGACTTTTGAGACATCCCTCTGCCTATGCC TGTTGTGCGGCGCGCTGCTCGTCGGTGCCATTCATGCGCTCCTCCCGGCA GGCTCTGATCAAGCGGATCGTCGCGGTGGCGGGCGACGAGGTGCAGGTCC GCGGCGGGCGACTCTATATCAACGGCCAGGAGCAGGTGAGCCTTTAGTTC TCTTTGCTGGCGGAATGCGTCCTTGCTCCTTTTCTTTTTTGTCTTCCTTT CTGATTTGTTGTGTGTCGCTGCCTAGGCAAAGCATGTTTCGTGTCTGTTC TGCTTCTCTTTCCCCTTTTTCATTCCGGCATGACTGCCGGCGATGGCCGA CCGGTGAGAGATGATCACAGTGTGACGCTCATCCTCCTCTGCTCGATTGA CGTTGTGCGGCCGCCACCAGATAAGAGAAACGATGGCGTGCAAAAGGACC AGTTTTAAGACGTTTTTTGCCCGTCCGCCCCACATCACAATGCGCGTTCT CCAAAATCCACCCTTGCAGAGCCCGCAAGCCCTTTCTTCGGCCCTCTTTG GAATGAAATCCCCACAGGTCGAAGATTTTACCTTCGAAGAGCCGGAGTAT GAGTGGGGTCCTATGAAGGTCCCCGCCGGCGCCATCATGGTCTTGGGAGA CAACCGGAACCACTCTCTCGACTCGCACATCTGGGGCTTTCTGCCAACGG ACAACGTCATCGGCCGCGCCGTCTTCCGCTATTGGCCGCCTTGGCGCGCC GGCTTGGTGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13252:26..1587+

>mRNA_P-wetherbeei_contig13252.1.1 ID=mRNA_P-wetherbeei_contig13252.1.1|Name=mRNA_P-wetherbeei_contig13252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig13252:26..1587+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTCTCCGGCGTTGTTCTTCTCCTGACCGGTGTCAGAATATGTGA
GGCGTGGGTCTTGCGCTCTTCAGGCCCAAGATGCGCCTCACGGGCTGGCC
TGGGTGCTCCACGAGTGATATCGACGGTGCCACCGAGCGTAGGAGGAGGC
TCAGGAGGTGGCTTCCCACGGCGGCCACCGCTGCGCTGCAGCAAGAACGA
CGCCGACGACGCCGCCGAGGATAAAGATAAGGAAGGAGAGAAGGGAGACC
TCATGTCGCGTGCTGCGGAGTGGTGGGCGCGTGACGGCAAGGAAGACGCG
AAGGTGTACGGGGTGTCGCTGGGGCTGGCGCTCCTCTTTCGCACCTTCAT
CATGGAGCCGCGGTTCATCCCGTCGCTCTCCATGTTTCCCACCTTTGAGA
TCAATGACCAACTCGCCGTAGAGAAGATCTCCCGGCTGTACCGCCCGTAC
CACCGCCGCGACGTCGTCGTCTTCACTCCGCCGCCGGCTTTTGCAGAGTA
CTCCAGCCGCGGCACCGATGCGGCTCTGATCAAGCGGATCGTCGCGGTGG
CGGGCGACGAGGTGCAGGTCCGCGGCGGGCGACTCTATATCAACGGCCAG
GAGCAGGTCGAAGATTTTACCTTCGAAGAGCCGGAGTATGAGTGGGGTCC
TATGAAGGTCCCCGCCGGCGCCATCATGGTCTTGGGAGACAACCGGAACC
ACTCTCTCGACTCGCACATCTGGGGCTTTCTGCCAACGGACAACGTCATC
GGCCGCGCCGTCTTCCGCTATTGGCCGCCTTGGCGCGCCGGCTTGGTGGA
G
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