mRNA_P-wetherbeei_contig13252.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A6H5KUG3_9PHAE (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG3_9PHAE) HSP 1 Score: 283 bits (724), Expect = 8.950e-93 Identity = 128/179 (71.51%), Postives = 149/179 (83.24%), Query Frame = 3 Query: 408 EWWARDGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKIS-RLYRPYHRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAGLVE 941 EWW RDGK D K+YG SL LAL+ R+ +EPRFIPSLSMFPTFEI DQLAV+K+S +L RPY R+DVVVF PPP F E+S RG ALIKR++AV GD VQ++ G L++NGQEQ ED+TFEEPEY WGP VP G +MVLGDNRNHSLDSHIWGFLPT+NVIGRA+F+YWPPWRAG +E Sbjct: 32 EWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDVVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIE 210
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: D8LS42_ECTSI (Mitochondrial inner membrane protease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS42_ECTSI) HSP 1 Score: 283 bits (725), Expect = 7.340e-92 Identity = 128/179 (71.51%), Postives = 149/179 (83.24%), Query Frame = 3 Query: 408 EWWARDGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKIS-RLYRPYHRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAGLVE 941 EWW RDGK D K+YG SL LAL+ R+ +EPRFIPSLSMFPTFEI DQLAV+K+S +L RPY R+DVVVF PPP F E+S RG ALIKR++AV GD VQ++ G L++NGQEQ ED+TFEEPEY WGP VP G +MVLGDNRNHSLDSHIWGFLPT+NVIGRA+F+YWPPWRAG +E Sbjct: 105 EWWERDGKSDLKIYGTSLALALVVRSVALEPRFIPSLSMFPTFEIGDQLAVDKLSSKLSRPYQRKDVVVFYPPPKFREFSDRGKKDALIKRVIAVGGDAVQIKDGSLFVNGQEQFEDYTFEEPEYSWGPQTVPEGMVMVLGDNRNHSLDSHIWGFLPTENVIGRAIFKYWPPWRAGTIE 283
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A7S2S8J5_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8J5_9STRA) HSP 1 Score: 259 bits (663), Expect = 9.790e-83 Identity = 133/219 (60.73%), Postives = 164/219 (74.89%), Query Frame = 3 Query: 297 GGFPRRPPLRCSKNDADDAAEDKDKEGEKGD-LMSRAAEWWA-RDGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEYSSRGTDA-ALIKRIVAVAGDEVQVR-GGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAGLVE 941 GG R PP+ N + ++++ K+G D L ++A WWA D + + K Y VSLGLALLFR FI+EPRFIPSLSMFPTF++ DQLAV+KIS++ RPY R DVVVFTPP AF + GT ALIKR+VAVAGD V+++ GG LY+NG Q E FT E+ Y+WGP +VPAG +MVLGDNRNHSLDSH+WGFLP +NVIGRAVF+YWP WR GL+E Sbjct: 42 GGNGRLPPIGRRGNAPEGSSDEGAKDGNVDDSLQAKAQRWWADEDLRAEVKSYTVSLGLALLFRAFIVEPRFIPSLSMFPTFDVGDQLAVDKISKVVRPYERNDVVVFTPPQAFFDVMGSGTKKEALIKRVVAVAGDVVEMKDGGTLYVNGVPQPEGFTNEKAFYDWGPREVPAGMLMVLGDNRNHSLDSHVWGFLPKENVIGRAVFKYWPVWRLGLIE 260
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A836CAW9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAW9_9STRA) HSP 1 Score: 251 bits (642), Expect = 3.180e-81 Identity = 115/150 (76.67%), Postives = 131/150 (87.33%), Query Frame = 3 Query: 492 MEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAGLVE 941 MEPR+IPSLSMFPTFE+ DQLAVEK++R YRPY R DVVVF PP AF+ +S+RGTD ALIKRIVAV GD VQ+RGG++Y+NGQ Q E F ++PEYEWGPM VPAG +MVLGDNRNHSLDSHIWGFLP +NVIGRAVF+YWPPWRAG VE Sbjct: 1 MEPRYIPSLSMFPTFEVGDQLAVEKVTRYYRPYSRHDVVVFYPPEAFSLFSARGTDEALIKRIVAVEGDTVQIRGGKVYLNGQAQDEPFVTDKPEYEWGPMVVPAGKVMVLGDNRNHSLDSHIWGFLPRENVIGRAVFKYWPPWRAGAVE 150
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A6T5N089_HETAK (Mitochondrial inner membrane protease subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N089_HETAK) HSP 1 Score: 254 bits (648), Expect = 2.130e-80 Identity = 131/228 (57.46%), Postives = 170/228 (74.56%), Query Frame = 3 Query: 291 SGGGFPRRPPLRCSK---NDADDAAEDKDKEGEKGDLMSRAAEW--------WAR--DGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEYSSRGTDAALIKRIVAVAGDEVQVR-GGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932 SG G RP L+ + NDAD+ +D +K GEK + A WA+ +GKED ++YG SL +AL+ RTF++EPR+IPSLSM+PTF+I DQLAV+K+S++ RPY RRDVVVFTPP AF+ +S R +A LIKR+VAVAGD V+++ GG L+ING++Q E +T E+ YEWGP VP G ++VLGDNRNHSLD H+WGFLPT+N+IGRAVF+YWPPWRAG Sbjct: 42 SGNGNFNRPSLKLNALGTNDADE--DDNEKRGEKSAAGNGAESSNPLAGLINWAQSEEGKEDLRIYGTSLAVALVLRTFVVEPRWIPSLSMYPTFDIGDQLAVDKLSKVARPYQRRDVVVFTPPDAFSIFSDRRGEA-LIKRVVAVAGDVVEIKDGGHLFINGEKQEEKYTNEDALYEWGPQTVPKGCVLVLGDNRNHSLDGHVWGFLPTENIIGRAVFKYWPPWRAG 266
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: B8BZJ0_THAPS (Mitochondrial inner membrane protease subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ0_THAPS) HSP 1 Score: 240 bits (612), Expect = 3.390e-76 Identity = 117/179 (65.36%), Postives = 140/179 (78.21%), Query Frame = 3 Query: 408 EWWARD-GKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEY---SSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932 EW+A D GKED K Y VSLG+ALL R I+EPR+IPSLSMFPTFE+ DQLAVEK+++ RP+ R +VVVF PP F E +SR ALIKRIVA GD+V+V GG+L++NG EQ E FT E+ EY++GP+ VP G ++VLGDNRNHSLD HIWGFLPT+NVIGRAVF YWPPWR G Sbjct: 1 EWFASDEGKEDVKTYTVSLGVALLLRLLIIEPRYIPSLSMFPTFEVGDQLAVEKVTKRIRPFSRNEVVVFHPPMKFREIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGVEQEEPFTAEDAEYDFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPTENVIGRAVFVYWPPWRCG 179
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: K0S0N9_THAOC (Mitochondrial inner membrane protease subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S0N9_THAOC) HSP 1 Score: 238 bits (608), Expect = 3.760e-74 Identity = 113/185 (61.08%), Postives = 142/185 (76.76%), Query Frame = 3 Query: 390 LMSRAAEWWA-RDGKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEY---SSRGTDAALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932 + EW+A +GKED + Y SLG+ALL R I+EPR+IPSLSM+PTFE+ DQLAVEK+++ RP +R +VVVF PP +F E +SR ALIKRIVA GD+V+V GG+L++NG+EQ E FT E+ +YE+GP+ VPAG ++VLGDNRNHSLD HIWGFLP +NVIGRAVF YWPPWR G Sbjct: 97 FFEQVQEWFASEEGKEDVRTYTTSLGIALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIRPLNRNEVVVFNPPTSFKEIVGDTSRKAKEALIKRIVATEGDKVEVMGGKLFVNGKEQDEPFTAEDAQYEFGPVLVPAGEVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A448Z2B4_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z2B4_9STRA) HSP 1 Score: 232 bits (592), Expect = 6.750e-73 Identity = 112/189 (59.26%), Postives = 141/189 (74.60%), Query Frame = 3 Query: 390 LMSRAAEWWARD-GKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAE-----YSSRGTDA--ALIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932 + + +WW D G++D K Y VSLG+ALL R I+EPR+IPSLSM+PTFE+ DQLAVEK+++ +P +R +VVVF PP +F + Y A ALIKRIVA+ GDEV+V+ G+LY+NG EQ E FT E+ EYE+GP+ VP G ++VLGDNRNHSLD HIWGFLP +NVIGRAVF YWPPWR G Sbjct: 10 FVDQLGDWWNSDEGRDDVKTYFVSLGIALLLRFTIVEPRYIPSLSMYPTFEVGDQLAVEKVTKRIKPLYRDEVVVFNPPQSFRDIMVDKYGQNAARAREALIKRIVAIEGDEVEVKMGKLYVNGDEQDEPFTAEDAEYEFGPVVVPPGNVLVLGDNRNHSLDGHIWGFLPKENVIGRAVFVYWPPWRVG 198
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A6V1AJW1_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V1AJW1_9STRA) HSP 1 Score: 235 bits (599), Expect = 8.550e-73 Identity = 116/186 (62.37%), Postives = 142/186 (76.34%), Query Frame = 3 Query: 390 LMSRAAEWWARD-GKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEY---SSRGTDAALIKRIVAVAGDEVQVR-GGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932 + EW+A D GKED K Y VSL +ALL R I+EPR+IPSLSM+PTFE+ DQLAVEK+++ RP++R +VVVF PP F E SSR + ALIKRIVAV GD V+V+ GG+L++NG +Q E FT E+ EYE+GP+ VP G ++VLGDNRNHSLD HIWGFLP +NVIGRAVF YWPPWR G Sbjct: 96 FFEQIQEWFASDEGKEDVKTYTVSLSVALLLRLLIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIRPFNRNEVVVFNPPERFRELVGESSRKSKEALIKRIVAVEGDTVEVKMGGKLFVNGVQQDEPFTAEDAEYEFGPVIVPPGDVLVLGDNRNHSLDGHIWGFLPAENVIGRAVFVYWPPWRVG 281
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Match: A0A7S4ABF9_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABF9_9STRA) HSP 1 Score: 233 bits (593), Expect = 4.570e-72 Identity = 130/269 (48.33%), Postives = 168/269 (62.45%), Query Frame = 3 Query: 162 LLLTGVRICEAWVLRSSGPRCASRAGLGAPRVISTVPPSV----GGGSGGGFPRRPPLRCSKNDADDAAEDKDKEGEKGDLMSRAAEWWARD-GKEDAKVYGVSLGLALLFRTFIMEPRFIPSLSMFPTFEINDQLAVEKISRLYRPYHRRDVVVFTPPPAFAEY--SSRGTDAA-----LIKRIVAVAGDEVQVRGGRLYINGQEQVEDFTFEEPEYEWGPMKVPAGAIMVLGDNRNHSLDSHIWGFLPTDNVIGRAVFRYWPPWRAG 932 +L++ V I EA+ R+ AS L IS P S+ G + + P + S +D + G ++ WW D G++D K Y VSLG+ALL R I+EPR+IPSLSM+PTFE+ DQLAVEK+++ +P++R +VVVF PP F + G D+A LIKRIVA+ GDEV+V+ G+LYING EQ E FT E+ EYE+GP+ VP ++VLGDNRNHSLD HIWGFLP NVIGRAVF YWPPWR G Sbjct: 14 ILISTVHISEAFQSRAP----ASAVSLSLSHRISKQPKSILQTPNGVNNNHVGQLKPSQLSMSDKNSG----------GSILDELGAWWNSDEGRDDVKTYFVSLGIALLLRFTIIEPRYIPSLSMYPTFEVGDQLAVEKVTKRIKPFYREEVVVFNPPQGFRDVMVGKYGQDSARAKEALIKRIVAIEGDEVEVKQGKLYINGDEQDEPFTAEDAEYEFGPVVVPPENVLVLGDNRNHSLDGHIWGFLPKQNVIGRAVFIYWPPWRVG 268 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13252.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13252.1.1 >prot_P-wetherbeei_contig13252.1.1 ID=prot_P-wetherbeei_contig13252.1.1|Name=mRNA_P-wetherbeei_contig13252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp MKVSGVVLLLTGVRICEAWVLRSSGPRCASRAGLGAPRVISTVPPSVGGGback to top mRNA from alignment at P-wetherbeei_contig13252:26..1587+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13252.1.1 ID=mRNA_P-wetherbeei_contig13252.1.1|Name=mRNA_P-wetherbeei_contig13252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1562bp|location=Sequence derived from alignment at P-wetherbeei_contig13252:26..1587+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13252:26..1587+ >mRNA_P-wetherbeei_contig13252.1.1 ID=mRNA_P-wetherbeei_contig13252.1.1|Name=mRNA_P-wetherbeei_contig13252.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig13252:26..1587+ (Phaeothamnion wetherbeei SAG_119_79)back to top |