mRNA_P-wetherbeei_contig13181.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13181.1.1
Unique NamemRNA_P-wetherbeei_contig13181.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13181.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13181contigP-wetherbeei_contig13181:681..1878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6412.HelroP105047
Preferred nameRAB2A
PFAMsRas
Model size1198
Max annot lvl33208|Metazoa
KEGG koko:K07877
KEGG Pathwayko04152,map04152
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005829,GO:0006464,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006996,GO:0007030,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0023052,GO:0030424,GO:0031090,GO:0031594,GO:0031982,GO:0031984,GO:0032482,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033036,GO:0033267,GO:0034613,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0036477,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043679,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0046907,GO:0048193,GO:0048471,GO:0050789,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0061175,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097159,GO:0097367,GO:0097458,GO:0098588,GO:0098791,GO:0098793,GO:0098794,GO:0098827,GO:0098975,GO:0099175,GO:0120025,GO:0120038,GO:0150034,GO:1901265,GO:1901363,GO:1901564
Exons1
Evalue0.000166
EggNOG OGsCOG1100@1|root,KOG0098@2759|Eukaryota,38D6D@33154|Opisthokonta,3BB4T@33208|Metazoa,3CV5J@33213|Bilateria
DescriptionGTPase activity
Cds size969
COG categoryU
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185976.35295-UTR-P-wetherbeei_contig13181:680..7761683185976.35295-UTR-P-wetherbeei_contig13181:680..776Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13181 681..776 +
1683185976.3718007-UTR-P-wetherbeei_contig13181:1745..18781683185976.3718007-UTR-P-wetherbeei_contig13181:1745..1878Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13181 1746..1878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185976.3635194-CDS-P-wetherbeei_contig13181:776..17451683185976.3635194-CDS-P-wetherbeei_contig13181:776..1745Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13181 777..1745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13181.1.1prot_P-wetherbeei_contig13181.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13181 777..1745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13181.1.1

>prot_P-wetherbeei_contig13181.1.1 ID=prot_P-wetherbeei_contig13181.1.1|Name=mRNA_P-wetherbeei_contig13181.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
MDAAISFICEYVSLPSTLGMLQCSSRSCQAGVTDAHWDAILRQSGVYLSA
SPGRLFEEKARGQLKEYHRRLNLVKRNPTNPHGINTTLHLIMVGARGCGQ
SCLLNFFRWRCRPSELVSHEELRIRSVGTAVDGSLVKLHICDKRASLRTS
GFAGALYTRPGSCLMLVFNCTDPAGLAPAAAELLRILCVTNSFATPWYDG
TAAAVANAAPAAAGVLPAGKLPIVLVAAKADYKARRTVRYDEGAAFARAH
GCAAYVETSAVDERNCDAAFLLAAFEAAASLRHFHGRLDKEAVSCSKAGT
AAANVAAAMAAVAITVVPTASV*
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mRNA from alignment at P-wetherbeei_contig13181:681..1878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13181.1.1 ID=mRNA_P-wetherbeei_contig13181.1.1|Name=mRNA_P-wetherbeei_contig13181.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1198bp|location=Sequence derived from alignment at P-wetherbeei_contig13181:681..1878+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGCTCGTCTCAACCTTCTCTCCCCAAAGTTGGTTCTTCACCCGTCCTG
CTCCTCCTTTTCTCGAATTGGTGAAGCATTTTCAAGCTTTGTGATTATGG
ACGCCGCTATCTCTTTCATTTGTGAGTACGTTTCTCTGCCGTCAACGCTC
GGGATGCTTCAGTGCTCCTCGCGGAGCTGCCAAGCGGGCGTTACCGACGC
CCACTGGGACGCGATTCTTCGACAGTCTGGTGTGTATCTCTCAGCCAGCC
CCGGCCGACTTTTTGAGGAGAAAGCGCGTGGGCAGCTGAAAGAGTACCAC
CGTCGACTCAACCTGGTGAAGCGCAACCCGACAAACCCGCACGGCATCAA
CACGACGTTGCATCTCATCATGGTGGGCGCGCGCGGCTGCGGCCAGAGCT
GCCTCCTCAACTTTTTCCGGTGGCGGTGCCGCCCCTCCGAGCTCGTCTCG
CACGAGGAGCTTCGGATTCGTAGCGTAGGCACCGCCGTCGACGGCAGCCT
CGTCAAGCTCCACATCTGCGACAAGCGCGCGTCGCTGCGGACATCGGGTT
TCGCCGGCGCGCTCTACACGCGGCCGGGAAGCTGCCTGATGCTAGTTTTC
AACTGCACTGACCCGGCCGGCCTCGCTCCGGCCGCCGCCGAACTCCTCCG
CATCTTGTGCGTCACCAACTCTTTCGCGACGCCCTGGTACGACGGCACGG
CAGCGGCGGTGGCAAACGCGGCACCGGCGGCCGCGGGTGTGCTACCAGCG
GGGAAGCTGCCGATTGTTCTGGTCGCTGCCAAGGCCGACTACAAGGCGCG
CCGCACGGTGCGCTACGACGAGGGCGCAGCATTTGCACGCGCCCACGGCT
GCGCCGCGTACGTTGAGACTTCCGCGGTGGACGAGCGGAATTGCGATGCC
GCGTTCCTCCTCGCGGCCTTTGAGGCGGCGGCCTCGCTGCGGCACTTTCA
CGGCCGGCTGGACAAGGAGGCGGTTTCGTGTTCAAAGGCGGGAACGGCGG
CGGCGAATGTGGCAGCGGCAATGGCCGCTGTGGCGATAACGGTGGTGCCG
ACGGCGTCGGTTTGAAAGCAGGTTTGTGAAGTCCTTTGGCGCGCCGATCC
GATGGAAATTCGCCCGTAAGCACATCTTGTTGTATTTGTTGAACCTTAAA
TTAGGGCGGTTGTTCGATGGTCATGGCCAGCCAAAGAATGATTATGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13181:681..1878+

>mRNA_P-wetherbeei_contig13181.1.1 ID=mRNA_P-wetherbeei_contig13181.1.1|Name=mRNA_P-wetherbeei_contig13181.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig13181:681..1878+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCCGCTATCTCTTTCATTTGTGAGTACGTTTCTCTGCCGTCAAC
GCTCGGGATGCTTCAGTGCTCCTCGCGGAGCTGCCAAGCGGGCGTTACCG
ACGCCCACTGGGACGCGATTCTTCGACAGTCTGGTGTGTATCTCTCAGCC
AGCCCCGGCCGACTTTTTGAGGAGAAAGCGCGTGGGCAGCTGAAAGAGTA
CCACCGTCGACTCAACCTGGTGAAGCGCAACCCGACAAACCCGCACGGCA
TCAACACGACGTTGCATCTCATCATGGTGGGCGCGCGCGGCTGCGGCCAG
AGCTGCCTCCTCAACTTTTTCCGGTGGCGGTGCCGCCCCTCCGAGCTCGT
CTCGCACGAGGAGCTTCGGATTCGTAGCGTAGGCACCGCCGTCGACGGCA
GCCTCGTCAAGCTCCACATCTGCGACAAGCGCGCGTCGCTGCGGACATCG
GGTTTCGCCGGCGCGCTCTACACGCGGCCGGGAAGCTGCCTGATGCTAGT
TTTCAACTGCACTGACCCGGCCGGCCTCGCTCCGGCCGCCGCCGAACTCC
TCCGCATCTTGTGCGTCACCAACTCTTTCGCGACGCCCTGGTACGACGGC
ACGGCAGCGGCGGTGGCAAACGCGGCACCGGCGGCCGCGGGTGTGCTACC
AGCGGGGAAGCTGCCGATTGTTCTGGTCGCTGCCAAGGCCGACTACAAGG
CGCGCCGCACGGTGCGCTACGACGAGGGCGCAGCATTTGCACGCGCCCAC
GGCTGCGCCGCGTACGTTGAGACTTCCGCGGTGGACGAGCGGAATTGCGA
TGCCGCGTTCCTCCTCGCGGCCTTTGAGGCGGCGGCCTCGCTGCGGCACT
TTCACGGCCGGCTGGACAAGGAGGCGGTTTCGTGTTCAAAGGCGGGAACG
GCGGCGGCGAATGTGGCAGCGGCAATGGCCGCTGTGGCGATAACGGTGGT
GCCGACGGCGTCGGTTTGA
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