mRNA_P-wetherbeei_contig13166.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13166.2.1
Unique NamemRNA_P-wetherbeei_contig13166.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A7Z9UBI4_9BACT (Nucleoside diphosphate kinase n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9UBI4_9BACT)

HSP 1 Score: 206 bits (524), Expect = 2.700e-66
Identity = 97/128 (75.78%), Postives = 111/128 (86.72%), Query Frame = 1
Query:    7 LQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREIP 390
            +Q+TLVLVKPDAV RGLIGNIV RFE RGL + G+KLI+MD++ A KLY PH G+PFY  LVSYMTSGPIV L +EGVNAIP+VR MMGATNP EA PGTIRGDFAQR+D NCVHGSDSPE+A+RE+P
Sbjct:    1 MQKTLVLVKPDAVARGLIGNIVGRFETRGLAIRGMKLIQMDSSLAGKLYAPHEGKPFYNDLVSYMTSGPIVCLCVEGVNAIPIVRTMMGATNPVEAAPGTIRGDFAQRLDCNCVHGSDSPESAERELP 128          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A7X8XNC1_9BURK (Nucleoside diphosphate kinase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XNC1_9BURK)

HSP 1 Score: 196 bits (498), Expect = 2.460e-62
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 1
Query:    7 LQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREIP 390
            +QRTLVL KPDAV RGL+G IV+RFEARGL L GLKL+ M+ ARA +LYEPHVG+ FY PL+ YMTSGPIVA+  EG NAI VVR MMGATNP +A PGTIRGDFAQRVD N VHGSDSPE+A REIP
Sbjct:    1 MQRTLVLCKPDAVARGLVGQIVARFEARGLQLAGLKLLAMEPARAERLYEPHVGKSFYPPLLQYMTSGPIVAMVWEGANAIEVVRTMMGATNPTQAAPGTIRGDFAQRVDRNVVHGSDSPESAAREIP 128          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A1V5VGZ2_9BACT (Nucleoside diphosphate kinase n=1 Tax=bacterium ADurb.Bin236 TaxID=1866925 RepID=A0A1V5VGZ2_9BACT)

HSP 1 Score: 168 bits (425), Expect = 3.980e-51
Identity = 79/129 (61.24%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 PQLQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREI 387
            P  +RTLV+VKPD VQRGLIG +VSR E RGL +VG+K++KMD   AAK YE HVG+PFYEPL  +MTS P+VA+A +G  A+ +VR MMGA +P E+  GTIRGDFA    +N VHGSDSPE+ +RE+
Sbjct:    3 PDKERTLVIVKPDGVQRGLIGEVVSRLERRGLKIVGVKMLKMDAGLAAKHYEAHVGKPFYEPLAKFMTSSPVVAVAAQGRGAVRLVRNMMGALSPEESAAGTIRGDFAVSKRYNVVHGSDSPESGEREV 131          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A7J2X963_9ARCH (Nucleoside diphosphate kinase n=4 Tax=Archaea TaxID=2157 RepID=A0A7J2X963_9ARCH)

HSP 1 Score: 167 bits (423), Expect = 6.850e-51
Identity = 79/127 (62.20%), Postives = 98/127 (77.17%), Query Frame = 1
Query:    7 LQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREI 387
            ++RTLVL+KPD VQRGLIG I+SRFE +GL +V +KLIK +   A K Y  H G+PF+EP V Y+TS P+VA+ +EG N I +VRKMMG TNP EA+PGTIRGDFAQ +  N +HGSDS ENA+ EI
Sbjct:    1 MERTLVLIKPDGVQRGLIGEIISRFEKKGLKIVAMKLIKPERELAEKHYAIHKGKPFFEPTVEYITSSPLVAMILEGKNVINIVRKMMGKTNPQEAQPGTIRGDFAQDIGRNIIHGSDSKENAEYEI 127          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A2E5PZN2_9CHLR (Nucleoside diphosphate kinase n=5 Tax=Chloroflexi TaxID=200795 RepID=A0A2E5PZN2_9CHLR)

HSP 1 Score: 167 bits (423), Expect = 6.850e-51
Identity = 74/127 (58.27%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    7 LQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREI 387
            ++RTL+L+KPDAVQRGL G I+SR E +GL L+G+KL+ +D+  A+K Y  HVG+PFYE LV ++TS P++ALA+EG +A+ VVR +MG TNP EA PGTIRGD+   +  N +HGSDSPE+A+RE+
Sbjct:    1 MERTLILIKPDAVQRGLSGKIISRIEDKGLKLIGMKLVHVDDGLASKXYGEHVGKPFYESLVEFITSSPVIALAVEGESAVQVVRNLMGGTNPIEALPGTIRGDYGLTIGMNLIHGSDSPESAKREL 127          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A7C4X3C2_9EURY (Nucleoside diphosphate kinase n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A7C4X3C2_9EURY)

HSP 1 Score: 167 bits (422), Expect = 1.000e-50
Identity = 77/126 (61.11%), Postives = 100/126 (79.37%), Query Frame = 1
Query:   13 RTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREIP 390
            RT VL+KPDAVQRGLIG IV RFEARGL +VG+K++++    A+  Y  H G+ F+EPL++Y+TSGP+VA+ +EG  A+ +VRKM+G TN AEAEPGTIRGDF   +  N +HGSDSPE+A+REIP
Sbjct:    4 RTFVLLKPDAVQRGLIGKIVERFEARGLKIVGMKMLRVSRELASTYYAEHQGKGFFEPLMAYVTSGPVVAMVLEGDGAVALVRKMIGKTNSAEAEPGTIRGDFGLTIGRNLIHGSDSPESAEREIP 129          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A3M1LWQ8_9CHLR (Nucleoside diphosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1LWQ8_9CHLR)

HSP 1 Score: 166 bits (421), Expect = 1.420e-50
Identity = 77/127 (60.63%), Postives = 100/127 (78.74%), Query Frame = 1
Query:    7 LQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREI 387
            ++RTL+++KPDAVQRGLIG I++RFE RGL +VG+KL+++D A A + Y  H G+PFYEPLV+Y+TSGP+V +A+EG +AI V R+ MGATNPAEA PGTIR DF   +  N VHGSD PE A  E+
Sbjct:    1 MERTLIIIKPDAVQRGLIGEIIARFERRGLRIVGMKLMQIDEALARRHYAVHEGKPFYEPLVAYITSGPVVVMALEGKDAIAVARRTMGATNPAEALPGTIRADFGIEIGRNLVHGSDGPETAAFEL 127          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: D3TAB8_ACIB4 (Nucleoside diphosphate kinase n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) TaxID=439481 RepID=D3TAB8_ACIB4)

HSP 1 Score: 165 bits (418), Expect = 3.820e-50
Identity = 81/127 (63.78%), Postives = 97/127 (76.38%), Query Frame = 1
Query:   10 QRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREIP 390
            QRTLVL+KPDAV R L+G I+SRFE +GL +V +K++ M   RA K YE H  +PFYE L+ Y+TSGPIVA+ +EG  AI VVRKMMG TN  EAEPGTIRGDFA  +  N VHGSDS E+A+REIP
Sbjct:    3 QRTLVLLKPDAVNRRLMGEIISRFEKKGLKIVAMKMLWMSRERAEKHYEVHKDKPFYESLIDYITSGPIVAMVLEGDRAIEVVRKMMGKTNGIEAEPGTIRGDFAMSIQNNLVHGSDSEESAKREIP 129          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A497AZ78_9CHLR (Nucleoside diphosphate kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A497AZ78_9CHLR)

HSP 1 Score: 165 bits (418), Expect = 3.950e-50
Identity = 77/127 (60.63%), Postives = 98/127 (77.17%), Query Frame = 1
Query:    7 LQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREI 387
            ++RTLV++KPD VQRGLIG I++R E RGL +V +K+I+MD A A + Y  H G+PF+E LV Y+TSGP+V + +EG  AI VVR+ MGATNPAEA PGTIR DFA  +  N VHGSDSPE A++EI
Sbjct:    1 MERTLVIIKPDGVQRGLIGPIITRLEQRGLKIVAMKMIQMDEALARRHYAVHEGKPFFEGLVKYITSGPVVVMVVEGTRAIEVVRRTMGATNPAEAAPGTIRADFALEIGRNLVHGSDSPETAEKEI 127          
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Match: A0A3B8K5J6_9FIRM (Nucleoside diphosphate kinase n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3B8K5J6_9FIRM)

HSP 1 Score: 165 bits (418), Expect = 4.070e-50
Identity = 78/127 (61.42%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    7 LQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKLYEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEPGTIRGDFAQRVDFNCVHGSDSPENAQREI 387
            ++RT V+VKPD VQR L+G ++SRFE RGL LVGLKL+++    AAK Y  H G+PFY+ L+ ++TSGP+VA+  EG+NA+ VVR MMG TNPAEA PGTIRGDFA  +  N VHGSDSP++A REI
Sbjct:    1 MERTFVMVKPDGVQRNLVGEVISRFEKRGLKLVGLKLMQISQELAAKHYGEHQGKPFYDELIGFITSGPVVAMVWEGLNAVSVVRNMMGKTNPAEAAPGTIRGDFALYMVNNVVHGSDSPDSATREI 127          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13166.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9UBI4_9BACT2.700e-6675.78Nucleoside diphosphate kinase n=1 Tax=Phycisphaera... [more]
A0A7X8XNC1_9BURK2.460e-6275.00Nucleoside diphosphate kinase n=1 Tax=Burkholderia... [more]
A0A1V5VGZ2_9BACT3.980e-5161.24Nucleoside diphosphate kinase n=1 Tax=bacterium AD... [more]
A0A7J2X963_9ARCH6.850e-5162.20Nucleoside diphosphate kinase n=4 Tax=Archaea TaxI... [more]
A0A2E5PZN2_9CHLR6.850e-5158.27Nucleoside diphosphate kinase n=5 Tax=Chloroflexi ... [more]
A0A7C4X3C2_9EURY1.000e-5061.11Nucleoside diphosphate kinase n=1 Tax=Euryarchaeot... [more]
A0A3M1LWQ8_9CHLR1.420e-5060.63Nucleoside diphosphate kinase n=1 Tax=Chloroflexi ... [more]
D3TAB8_ACIB43.820e-5063.78Nucleoside diphosphate kinase n=1 Tax=Aciduliprofu... [more]
A0A497AZ78_9CHLR3.950e-5060.63Nucleoside diphosphate kinase n=1 Tax=Chloroflexi ... [more]
A0A3B8K5J6_9FIRM4.070e-5061.42Nucleoside diphosphate kinase n=1 Tax=Firmicutes b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13166contigP-wetherbeei_contig13166:1491..1880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog439481.Aboo_1239
Preferred namendk
PFAMsNDK
Model size390
Max annot lvl28890|Euryarchaeota
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009132,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0044464,GO:0046483,GO:0046939,GO:0055086,GO:0071704,GO:1901360
Exons1
Evalue6.27e-51
EggNOG OGsCOG0105@1|root,arCOG04313@2157|Archaea,2XWSK@28890|Euryarchaeota,3F2MT@33867|unclassified Euryarchaeota
EC2.7.4.6
DescriptionMajor role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate
Cds size390
COG categoryF
BiGG ReactioniAF692.Mbar_A3385
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185975.8785775-CDS-P-wetherbeei_contig13166:1490..18801683185975.8785775-CDS-P-wetherbeei_contig13166:1490..1880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13166 1491..1880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13166.2.1prot_P-wetherbeei_contig13166.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13166 1491..1880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13166.2.1

>prot_P-wetherbeei_contig13166.2.1 ID=prot_P-wetherbeei_contig13166.2.1|Name=mRNA_P-wetherbeei_contig13166.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
PQLQRTLVLVKPDAVQRGLIGNIVSRFEARGLTLVGLKLIKMDNARAAKL
YEPHVGRPFYEPLVSYMTSGPIVALAIEGVNAIPVVRKMMGATNPAEAEP
GTIRGDFAQRVDFNCVHGSDSPENAQREIP
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mRNA from alignment at P-wetherbeei_contig13166:1491..1880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13166.2.1 ID=mRNA_P-wetherbeei_contig13166.2.1|Name=mRNA_P-wetherbeei_contig13166.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig13166:1491..1880+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCAGCTTCAGCGCACCCTCGTTCTCGTCAAGCCCGACGCAGTTCAGCG CGGCCTGATCGGCAACATCGTCAGCCGCTTCGAAGCCCGCGGCCTGACCC TCGTCGGCCTCAAGCTGATCAAGATGGACAACGCCCGCGCCGCCAAGCTT TATGAGCCCCACGTAGGCCGCCCGTTCTACGAGCCCCTCGTCAGCTACAT GACCTCCGGCCCCATCGTGGCCCTGGCCATCGAAGGCGTCAACGCCATCC CCGTCGTCCGCAAGATGATGGGCGCCACCAACCCGGCCGAAGCCGAACCC GGCACGATCCGCGGCGACTTCGCTCAGCGCGTCGACTTCAACTGCGTCCA CGGCAGCGATTCGCCCGAGAACGCTCAGCGCGAGATCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13166:1491..1880+

>mRNA_P-wetherbeei_contig13166.2.1 ID=mRNA_P-wetherbeei_contig13166.2.1|Name=mRNA_P-wetherbeei_contig13166.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig13166:1491..1880+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCAGCTTCAGCGCACCCTCGTTCTCGTCAAGCCCGACGCAGTTCAGCG
CGGCCTGATCGGCAACATCGTCAGCCGCTTCGAAGCCCGCGGCCTGACCC
TCGTCGGCCTCAAGCTGATCAAGATGGACAACGCCCGCGCCGCCAAGCTT
TATGAGCCCCACGTAGGCCGCCCGTTCTACGAGCCCCTCGTCAGCTACAT
GACCTCCGGCCCCATCGTGGCCCTGGCCATCGAAGGCGTCAACGCCATCC
CCGTCGTCCGCAAGATGATGGGCGCCACCAACCCGGCCGAAGCCGAACCC
GGCACGATCCGCGGCGACTTCGCTCAGCGCGTCGACTTCAACTGCGTCCA
CGGCAGCGATTCGCCCGAGAACGCTCAGCGCGAGATCCCC
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