mRNA_P-wetherbeei_contig13165.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13165.2.1
Unique NamemRNA_P-wetherbeei_contig13165.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: UPI000B30753E (nuclear transport factor 2 family protein n=1 Tax=Endozoicomonas atrinae TaxID=1333660 RepID=UPI000B30753E)

HSP 1 Score: 129 bits (323), Expect = 7.630e-36
Identity = 59/124 (47.58%), Postives = 86/124 (69.35%), Query Frame = 1
Query:   22 MSDRYRELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSP 393
            M+   ++L +L+  F+++FN N+LD VM++F E A+Y+E  GR ++G  AIR A  PQF G FG +QF+++D F+DA SGK+M SW   ++  G P    GLDLLHF GD +V+K TY K+K+P
Sbjct:    1 MNTSRQQLIELTYKFMESFNTNNLDDVMAFFSEGAIYDEFNGRRNEGKDAIRRALEPQFSGNFGVMQFLDEDLFVDADSGKVMVSWQCKLELKGQPVFWHGLDLLHFNGDTVVQKLTYAKSKAP 124          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A3D5DCR0_9GAMM (SnoaL-like domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DCR0_9GAMM)

HSP 1 Score: 128 bits (321), Expect = 1.580e-35
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 1
Query:   22 MSDRYRELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSPHY 399
            M+ R+ EL  L+  FL AFNR D+D +M +F EDAVYEE  G+V++G A IR +F   F G+FG I F EDDTFIDA + K+MSSW + +D D  P ++ GLDLL+F   KI RK T+VK K+  Y
Sbjct:    2 MNRRHDELKQLTDEFLGAFNRADVDGIMMFFAEDAVYEEFHGKVNEGKAEIRKSFEGLFGGRFGTICFHEDDTFIDADASKVMSSWKLHLDMDRKPVVLYGLDLLYFEERKITRKLTFVKAKAGLY 127          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A081K9V7_9GAMM (SnoaL-like domain-containing protein n=1 Tax=Endozoicomonas elysicola TaxID=305900 RepID=A0A081K9V7_9GAMM)

HSP 1 Score: 127 bits (319), Expect = 3.090e-35
Identity = 61/124 (49.19%), Postives = 85/124 (68.55%), Query Frame = 1
Query:   22 MSDRYRELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSP 393
            M+   + L DL+  F++AFN N+LD VM++F EDA+Y+E   + ++G  AIR    PQF G+FG +QF+++D FIDA SGK+M SW   ++    P   RGLDLLHF GDK+V+K TY K+K P
Sbjct:    1 MTTTRQHLIDLTFNFMEAFNTNNLDEVMTFFTEDAIYDEFNNKRNKGKEAIRRTLEPQFSGRFGVMQFLDEDLFIDAESGKVMVSWLCKLEVKDQPVSWRGLDLLHFNGDKVVQKLTYAKSKVP 124          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A6L8GHQ5_9BACT (Nuclear transport factor 2 family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A6L8GHQ5_9BACT)

HSP 1 Score: 126 bits (316), Expect = 1.540e-34
Identity = 58/119 (48.74%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   37 RELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSP 393
            R L +L+  F+ AFN NDLDAV++ F +D +Y+E  G  ++G  AIR A  PQF G++G ++FIEDD F+D  +GK+M+SW  T++  G P   RGLDL++F GD +VRK TY K ++P
Sbjct:   22 RRLAELTRRFVTAFNDNDLDAVLACFADDGIYDEFNGTRNRGRDAIRAALLPQFTGRYGTMRFIEDDLFVDPEAGKVMASWRCTLELKGQPTSWRGLDLMYFEGDALVRKSTYAKARAP 140          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A2V6XHX6_9BACT (SnoaL-like domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6XHX6_9BACT)

HSP 1 Score: 122 bits (307), Expect = 1.980e-33
Identity = 58/118 (49.15%), Postives = 79/118 (66.95%), Query Frame = 1
Query:   40 ELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSP 393
            +L  L VAF DAFNR+DLD VMS+  +DAVY+E  G V++GVAAIR AF PQF G +G ++F  +D F+DA +GK +  W  T++    P   RGLD++H    +I +K TY K K+P
Sbjct:    5 KLAKLFVAFTDAFNRDDLDGVMSFMADDAVYDEFNGTVNRGVAAIRDAFVPQFRGDYGKLRFHTEDLFVDAAAGKALIRWSCTLETKRGPAAWRGLDIVHVENGRITQKLTYAKAKAP 122          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A2V6Z0E8_9BACT (SnoaL-like domain-containing protein n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6Z0E8_9BACT)

HSP 1 Score: 122 bits (306), Expect = 2.810e-33
Identity = 57/118 (48.31%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   40 ELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSP 393
            +L DL + F  AFNR+DLD VMS+  EDAVY+E TG +++G AAIR AF PQF G +G ++F  +D F+DA +GK +  W  T++    P   RGLD++H V  +I  K TY K K P
Sbjct:    5 KLADLVIRFTQAFNRDDLDGVMSFMAEDAVYDEFTGTINRGSAAIRAAFVPQFRGDYGKMRFNTEDLFVDAATGKALIRWQCTLETKRGPAAWRGLDIIHVVNGRITEKLTYAKAKVP 122          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A2E6GK39_9PROT (SnoaL-like domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GK39_9PROT)

HSP 1 Score: 122 bits (306), Expect = 5.680e-33
Identity = 62/134 (46.27%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    1 LKPGACAMSDRYR---ELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSP 393
            LK G   M+D+ R   EL  L + F +AFNR ++D VMSYF E A+Y+E  G  ++G+ AIR AF PQF+G FG ++F  +D F+D  +GK M  W +T++++      RGLDLLHF   K+V K TY K K P
Sbjct:    3 LKNGDAVMADQQRARAELEKLVIDFTEAFNRENIDEVMSYFAEGAIYDEFNGIRNEGLEAIRKAFEPQFDGAFGKMRFHTEDMFLDVDAGKAMIRWALTLEEETRAGAYRGLDLLHFRDGKLVEKHTYCKAKIP 136          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A2E7HKE1_9PROT (SnoaL-like domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7HKE1_9PROT)

HSP 1 Score: 121 bits (304), Expect = 5.820e-33
Identity = 58/127 (45.67%), Postives = 81/127 (63.78%), Query Frame = 1
Query:   22 MSDRYRELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSPHYT 402
            M+DR +EL +L+  F+D FNR D+D + ++F ED VYE+  G    G AAI+ AF P   G  G I F ++D F +  S K+M+SW + ++ +G P  +RGLDLLHF GDK+VRK  Y K  +P  T
Sbjct:    1 MTDRRKELEELTHQFVDCFNRQDIDGIAAFFAEDGVYEDSNGGSHTGPAAIKEAFVPLVCGSRGKISFDDEDFFAEPESDKVMASWTLNMEIEGKPMRLRGLDLLHFRGDKLVRKMAYCKAAAPQLT 127          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A6N9BIP2_9PROT (Nuclear transport factor 2 family protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N9BIP2_9PROT)

HSP 1 Score: 121 bits (303), Expect = 8.260e-33
Identity = 61/123 (49.59%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   40 ELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSPHYTAR 408
            EL ++++ F DAFNR+DLD VM++F EDAVY+E  G   +G  AIR AF P F GKFG ++F E+D F+ A  GK M SW   +         RGLDLLH  G +IV K TY KT  P + AR
Sbjct:    5 ELKEITLKFTDAFNRDDLDGVMAWFAEDAVYDEFHGARHEGKDAIRAAFEPMFAGKFGKVRFEEEDLFLAAEDGKAMISWSCVLTTPERSSAWRGLDLLHVEGGRIVAKHTYAKTARPLFEAR 127          
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Match: A0A2E8YJF7_9GAMM (SnoaL-like domain-containing protein n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E8YJF7_9GAMM)

HSP 1 Score: 121 bits (303), Expect = 1.320e-32
Identity = 59/124 (47.58%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   22 MSDRYRELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAAIRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMRGLDLLHFVGDKIVRKQTYVKTKSP 393
            MSDR +EL  L+  F+DAFNR  LD V+SYF +DAVYE+  G    G  AIRTAF P   G  G I+F ++D F +  + K+M+SW + ++ +G P  MRG+D+L F GDK++ KQ Y K ++P
Sbjct:   11 MSDRRKELEQLTHDFVDAFNRQSLDDVVSYFADDAVYEDSRGGSHTGSDAIRTAFTPLVGGAMGKIRFDDEDFFAEVETDKVMASWTLNMEVEGKPVSMRGMDILQFRGDKLILKQAYCKAQTP 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13165.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000B30753E7.630e-3647.58nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A3D5DCR0_9GAMM1.580e-3552.38SnoaL-like domain-containing protein n=1 Tax=Gamma... [more]
A0A081K9V7_9GAMM3.090e-3549.19SnoaL-like domain-containing protein n=1 Tax=Endoz... [more]
A0A6L8GHQ5_9BACT1.540e-3448.74Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A2V6XHX6_9BACT1.980e-3349.15SnoaL-like domain-containing protein n=1 Tax=Candi... [more]
A0A2V6Z0E8_9BACT2.810e-3348.31SnoaL-like domain-containing protein n=2 Tax=Candi... [more]
A0A2E6GK39_9PROT5.680e-3346.27SnoaL-like domain-containing protein n=1 Tax=Rhodo... [more]
A0A2E7HKE1_9PROT5.820e-3345.67SnoaL-like domain-containing protein n=1 Tax=Rhodo... [more]
A0A6N9BIP2_9PROT8.260e-3349.59Nuclear transport factor 2 family protein n=3 Tax=... [more]
A0A2E8YJF7_9GAMM1.320e-3247.58SnoaL-like domain-containing protein n=1 Tax=Thiot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13165contigP-wetherbeei_contig13165:1000..1410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog305900.GV64_09465
PFAMsSnoaL_2
Model size411
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.9e-36
EggNOG OGsCOG4319@1|root,COG4319@2|Bacteria,1PA0J@1224|Proteobacteria
DescriptionSnoaL-like domain
Cds size390
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185975.815547-UTR-P-wetherbeei_contig13165:999..10201683185975.815547-UTR-P-wetherbeei_contig13165:999..1020Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13165 1000..1020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185975.8238814-CDS-P-wetherbeei_contig13165:1020..14101683185975.8238814-CDS-P-wetherbeei_contig13165:1020..1410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13165 1021..1410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13165.2.1prot_P-wetherbeei_contig13165.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13165 1021..1410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13165.2.1

>prot_P-wetherbeei_contig13165.2.1 ID=prot_P-wetherbeei_contig13165.2.1|Name=mRNA_P-wetherbeei_contig13165.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MSDRYRELHDLSVAFLDAFNRNDLDAVMSYFREDAVYEELTGRVSQGVAA
IRTAFAPQFEGKFGPIQFIEDDTFIDAGSGKIMSSWDMTIDKDGTPQLMR
GLDLLHFVGDKIVRKQTYVKTKSPHYTAR*
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mRNA from alignment at P-wetherbeei_contig13165:1000..1410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13165.2.1 ID=mRNA_P-wetherbeei_contig13165.2.1|Name=mRNA_P-wetherbeei_contig13165.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig13165:1000..1410+ (Phaeothamnion wetherbeei SAG_119_79)
CTTAAGCCAGGAGCGTGCGCGATGTCTGATCGTTACCGTGAACTCCATGA TTTGAGCGTCGCTTTCCTCGACGCCTTCAACCGCAACGACCTTGACGCCG TGATGTCTTATTTCCGCGAAGACGCGGTCTACGAAGAGCTGACCGGCCGG GTCAGCCAGGGCGTGGCGGCCATCCGTACGGCCTTTGCGCCGCAGTTCGA AGGCAAGTTCGGCCCTATCCAGTTCATCGAGGACGATACCTTCATCGATG CCGGCAGCGGCAAAATCATGAGTAGCTGGGACATGACTATCGACAAGGAC GGCACGCCGCAGCTCATGCGCGGCCTGGACCTGCTGCACTTTGTCGGCGA TAAGATCGTGCGCAAGCAAACCTATGTGAAGACCAAGTCGCCGCACTACA CGGCGCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13165:1000..1410+

>mRNA_P-wetherbeei_contig13165.2.1 ID=mRNA_P-wetherbeei_contig13165.2.1|Name=mRNA_P-wetherbeei_contig13165.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig13165:1000..1410+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTGATCGTTACCGTGAACTCCATGATTTGAGCGTCGCTTTCCTCGA
CGCCTTCAACCGCAACGACCTTGACGCCGTGATGTCTTATTTCCGCGAAG
ACGCGGTCTACGAAGAGCTGACCGGCCGGGTCAGCCAGGGCGTGGCGGCC
ATCCGTACGGCCTTTGCGCCGCAGTTCGAAGGCAAGTTCGGCCCTATCCA
GTTCATCGAGGACGATACCTTCATCGATGCCGGCAGCGGCAAAATCATGA
GTAGCTGGGACATGACTATCGACAAGGACGGCACGCCGCAGCTCATGCGC
GGCCTGGACCTGCTGCACTTTGTCGGCGATAAGATCGTGCGCAAGCAAAC
CTATGTGAAGACCAAGTCGCCGCACTACACGGCGCGTTGA
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