mRNA_P-wetherbeei_contig13163.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13163.1.1
Unique NamemRNA_P-wetherbeei_contig13163.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: A0A7S2XW71_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW71_9STRA)

HSP 1 Score: 185 bits (469), Expect = 4.850e-57
Identity = 93/155 (60.00%), Postives = 115/155 (74.19%), Query Frame = 1
Query:   28 VFTAGRKLEDDGLYVIGIFDLEPAGILIRAYNQATSAQYTLSPSELELTRAGLCRSDDDLKRLADSIQLYRI-GTNTFIHSTLPGISKPKVVPLGDAAKDFIAATPAGPATSLPELLATALSELCKVKPQGLDAVQWLGEWLLANNPNQPTVQEP 489
            ++  GR+L D G+Y+I + DL+PAG+LI+AYNQ TS++Y LSPSE EL  AGL R  +DLK L +SI L  + G  TF+ S+L GI  PKV+P G  A  FI + PAG  T LPELL TALSELCKVKP GLDAV+WLG+WLL NNPNQP ++EP
Sbjct:    6 LYVQGRQLSDGGMYIISVTDLDPAGVLIKAYNQVTSSEYYLSPSEDELEEAGLSRQKEDLKTLVESIDLTELSGGRTFLRSSLAGIKDPKVIPQGAEAAQFIKSIPAGTDT-LPELLTTALSELCKVKPSGLDAVRWLGQWLLENNPNQPQIEEP 159          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: A0A836CDF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF1_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.420e-53
Identity = 88/151 (58.28%), Postives = 111/151 (73.51%), Query Frame = 1
Query:   49 LEDDGLYVIGIFDLEPAGILIRAYNQATSAQYTLSPSELELTRAGLCRSDDDLKRLADSIQLYRIGTNTFIHSTLPGISKPKVVPLGDAAKDFIAATPAGPATSLPELLATALSELCKVKPQG---LDAVQWLGEWLLANNPNQPTVQEPD 492
            L+D  +Y IGIFD+EPAG++IRA N AT+  Y L P+E EL  A L R++ DL RLA+S+ L  +G  TFI+S+LPGI KPK++P G+ AKDF+         SL +LL T LSELCKVKPQG   +DAV+WLGEWLLANNPNQP V+EP+
Sbjct:    1 LQDGDMYTIGIFDMEPAGVVIRALNNATAKYYALGPTESELAAAKLGRNESDLARLAESVDLLEVGGTTFIYSSLPGICKPKIIPTGETAKDFMNGLTLRDG-SLVQLLTTGLSELCKVKPQGPGGIDAVRWLGEWLLANNPNQPAVEEPE 150          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: A0A7S2WUZ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUZ4_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.440e-52
Identity = 86/159 (54.09%), Postives = 112/159 (70.44%), Query Frame = 1
Query:   16 KAAAVFTAGRKLEDDGLYVIGIFDLEPAGILIRAYNQATSAQYTLSPSELELTRAGLCRSDDDLKRLADSIQLYRIGTNTFIHSTLPGISKPKVVPLGDAAKDFIAATPAGPATSLPELLATALSELCKVKPQGLDAVQWLGEWLLANNPNQPTVQEPD 492
            K AA++T GR+L D  +Y+  ++DLEPAG+LIRAY  +TS++ T SPSE EL  A + R++  L +L DS  +   G    + S L GI+KPK+VP GD  + FI ATPAG  T LPELL TAL+ELCK KP  L+AV+WLG+WL+ NNPNQP V EP+
Sbjct:   11 KKAAIYTVGRQLNDGDMYIFSVYDLEPAGLLIRAYCASTSSELTTSPSESELYAASITRAEKHLAQLCDSYDIVTKGGTPLLESNLTGINKPKLVPQGDGVRQFITATPAGSET-LPELLTTALTELCKQKPAKLEAVRWLGQWLIDNNPNQPQVAEPE 168          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: A0A8J2WSR2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSR2_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.570e-44
Identity = 74/158 (46.84%), Postives = 105/158 (66.46%), Query Frame = 1
Query:   16 KAAAVFTAGRKLEDDGLYVIGIFDLEPAGILIRAYNQATSAQYTLSPSELELTRAGLCRSDDDLKRLADSIQLYRIGTNTFIHSTLPGISKPKVVPLGDAAKDFIAATPAGPATSLPELLATALSELCKVKPQGLDAVQWLGEWLLANNPNQPTVQEP 489
            +  A++   R L+D+ +Y++ +FD  P+G+L++AY Q  S +Y +  +E EL  A L RS   L +LA+S+ L  +     + S++ GI KPKV+P GD  + FI  T AG  T L + L+ ALSELCK KP GLDAV+WLG+W+L NNPNQPTV+EP
Sbjct:    4 RKVAIYNCARALDDNDIYILQMFDTSPSGLLVKAYRQTESVEYFMPITESELDNAALSRSQQALSKLAESLSLVELSGKLVLMSSITGIIKPKVLPSGDGVRQFIGRTKAGRDT-LSDFLSEALSELCKEKPVGLDAVRWLGQWILKNNPNQPTVEEP 160          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: D8LSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK2_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 4.760e-33
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  178 AGLCRSDDDLKRLADSIQLYRIGTNTFIHSTLPGISKPKVVPLGDAAKDFIAATPAGPATSLPELLATALSELCKVKPQGLDAVQWLGEWLLANNPNQPTVQEPD 492
            AGL RS  DL+RLA+SI +Y +    FIHST  GI+KPK+VP GD A+ F+    AG   SL ELL T  SELCKVKP+GLDAV+WL EWLL NNPN+P V   D
Sbjct:    4 AGLSRSRGDLERLAESIGIYHVHGQIFIHSTFDGIAKPKIVPTGDQARAFVEGMRAGTG-SLEELLTTPFSELCKVKPEGLDAVRWLAEWLLENNPNKPKVAHAD 107          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: A0A7S3YI87_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YI87_HETAK)

HSP 1 Score: 111 bits (277), Expect = 9.870e-29
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1
Query:   25 AVFTAGRKLEDDGLYVIGIFDLEPAGILIRAYNQATSAQYTLSPSELELTRAGLCRSDDDLKRLADSIQLYRIGTNTFIHSTLPGISKPKVVPLGDAAK 321
            +++  GR+L+D  LYVI + DLEPAG+L++AYNQ TSA++ LSPSE EL+ AGL R  +DL++L +SI L  I   TF+ S+LPG+   KVVP GD A+
Sbjct:    5 SLYVQGRRLKDGSLYVISVVDLEPAGVLVKAYNQITSAEFFLSPSEDELSEAGLSRKQEDLQKLVESIDLKEISGQTFLSSSLPGVRDAKVVPRGDQAQ 103          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: D0MVH9_PHYIT (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MVH9_PHYIT)

HSP 1 Score: 75.1 bits (183), Expect = 1.060e-13
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   61 GLYVIGIFDLEPAGILIRAY----NQATSAQYTLSPSELELTRAGLCRSDDDLKRLADSIQL----YRIGTNTF-----------IHSTLPGISKPKVVPLGDAAKDFIAATPAGPAT----SLPE-------LLATALSELCKVKPQGLDAVQWLGEWLLANNPNQPTVQEPD 492
            G + + +F+++ AG+    +    +     +++   +  EL +AG+ R+ D    L DS++L    Y  G +             + STLPGIS P  +   +AA  + +  P G +T     +PE       L+   L+ELC+ KP GL+AV+WLG W L +NP QP V+  D
Sbjct:   19 GEFEVRVFEVDDAGVAAVVFQISQDHGPPLKFSRVFTRAELDKAGITRTLDGHVLLVDSLELVEDAYFTGNDAVTAGQNMLAAYQLSSTLPGISIPPPIVSHEAALSYFSRAPVGLSTWNNSRVPEEENLLANLVVKGLTELCREKPPGLEAVKWLGNWFLDHNPAQPKVEVDD 192          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: A0A8J5IJY5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IJY5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.580e-13
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   61 GLYVIGIFDLEPAGILIRAYN----QATSAQYTLSPSELELTRAGLCRSDDDLKRLADSIQL----YRIGTNTF-----------IHSTLPGISKPKVVPLGDAAKDFIAATPAGPAT----SLPE-------LLATALSELCKVKPQGLDAVQWLGEWLLANNPNQPTVQEPD 492
            G + + +F+++ AG+    +          +++   S  EL +AG+ R+ +    L DS++L    Y  G +             + STLPGIS P  +   +AA  + +  P G +T     +PE       L+   L+ELC+ KP GL+A++WLG W L +NP QP V+E D
Sbjct:  819 GEFEVRLFEVDDAGVAAVVFQISQEHGPPLKFSRVFSRAELDKAGIARTLEGHVALVDSLELVEDAYFTGNDAVTAGQNMLAAYQLSSTLPGISFPPPIVSHEAALSYFSRAPVGLSTWNSSRVPEEENLLVNLVVKGLTELCREKPPGLEAIKWLGNWFLDHNPAQPKVEEDD 992          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: A0A6A4F579_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F579_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.700e-13
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 1
Query:   61 GLYVIGIFDLEPAGILIRAYNQATS----AQYTLSPSELELTRAGLCRSDDDLKRLADSIQLYR-----------IGTNTF----IHSTLPGISKPKVVPLGDAAKDFIAATPAGPAT----SLPE-------LLATALSELCKVKPQGLDAVQWLGEWLLANNPNQPTVQ 483
            G + + +F++  AGI    +  +T      +++   S  EL +AG+ ++ +    L DS++L              G N      + STLPGIS P  +    AA  + A  P G +T     +PE       L+   L+ELC+ KP GL+AV+WLG W L +NP QP V+
Sbjct:   19 GEFEVRLFEVYDAGIAAVVFQISTEHGSPLKFSRVFSRAELDKAGIAKTLEGHVTLVDSLELIEDAYFTGNDAVGAGQNVLAAYQLSSTLPGISFPPPIVSHQAALAYFARAPVGLSTWNNSRVPEDDNLLVNLIVKGLTELCREKPPGLEAVKWLGNWFLDHNPAQPKVE 189          
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Match: A0A0P1B1F2_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1F2_PLAHL)

HSP 1 Score: 70.9 bits (172), Expect = 4.270e-12
Identity = 52/172 (30.23%), Postives = 79/172 (45.93%), Query Frame = 1
Query:   67 YVIGIFDLEPAGILIRAYN----QATSAQYTLSPSELELTRAGLCRSDDDLKRLADSIQL----YRIGTNTF-----------IHSTLPGISKPKVVPLGDAAKDFIAATPAGPATS-----------LPELLATALSELCKVKPQGLDAVQWLGEWLLANNPNQPTVQEPD 492
            + I +F+++ AGI   A      Q +   ++ + S  EL +AG+ R+      L DS++L    Y  G +             + S LPGIS P  +    AA  + A  P G +             L  ++   L+ELC+ KP GL+A++WLG W L +NP QP V   D
Sbjct:   21 FEIQLFEVDGAGITAVAIQISQEQDSPQNFSRAFSRAELEKAGINRTSKAYVALVDSLELVEDVYFTGNDAISSGQNMLTAYRLSSKLPGISSPLPIVSHHAALSYFARAPVGFSARNTSQEVEEDNLLVNVIVKGLTELCREKPSGLNALRWLGNWFLEHNPAQPLVNADD 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13163.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A7S2XW71_9STRA4.850e-5760.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CDF1_9STRA1.420e-5358.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WUZ4_9STRA1.440e-5254.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J2WSR2_9STRA1.570e-4446.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D8LSK2_ECTSI4.760e-3360.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YI87_HETAK9.870e-2953.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D0MVH9_PHYIT1.060e-1330.46Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A8J5IJY5_9STRA2.580e-1330.46Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A6A4F579_9STRA5.700e-1331.58Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A0P1B1F2_PLAHL4.270e-1230.23Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13163contigP-wetherbeei_contig13163:792..1653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009041964.1
Model size504
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue7.98e-38
EggNOG OGs2CZH7@1|root,2SACH@2759|Eukaryota
Ec32 ortholog descriptionDpy-30 motif
Ec32 orthologEc-09_001940.1
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185975.7507677-CDS-P-wetherbeei_contig13163:791..9591683185975.7507677-CDS-P-wetherbeei_contig13163:791..959Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13163 792..959 +
1683185975.7587886-CDS-P-wetherbeei_contig13163:1062..11881683185975.7587886-CDS-P-wetherbeei_contig13163:1062..1188Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13163 1063..1188 +
1683185975.7656782-CDS-P-wetherbeei_contig13163:1443..16531683185975.7656782-CDS-P-wetherbeei_contig13163:1443..1653Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13163 1444..1653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13163.1.1prot_P-wetherbeei_contig13163.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13163 792..1653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13163.1.1

>prot_P-wetherbeei_contig13163.1.1 ID=prot_P-wetherbeei_contig13163.1.1|Name=mRNA_P-wetherbeei_contig13163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MSWQKKAAAVFTAGRKLEDDGLYVIGIFDLEPAGILIRAYNQATSAQYTL
SPSELELTRAGLCRSDDDLKRLADSIQLYRIGTNTFIHSTLPGISKPKVV
PLGDAAKDFIAATPAGPATSLPELLATALSELCKVKPQGLDAVQWLGEWL
LANNPNQPTVQEPDCGQ*
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mRNA from alignment at P-wetherbeei_contig13163:792..1653+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13163.1.1 ID=mRNA_P-wetherbeei_contig13163.1.1|Name=mRNA_P-wetherbeei_contig13163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=862bp|location=Sequence derived from alignment at P-wetherbeei_contig13163:792..1653+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTGGCAAAAGAAGGCGGCGGCCGTGTTCACTGCGGGGCGAAAGCT GGAAGACGACGGGCTTTACGTGATCGGCATCTTTGACCTTGAGCCTGCAG GTATCCTCATCCGAGCGTACAATCAAGCAACGTCAGCGCAGTACACGCTG TCGCCTTCCGAACTCGAAGTACGTGGACCAGAAGAACATACTGAATCGGA TCAGTAGACTTTATCCTCAAAAGCACGCGATGATTTTTGCTTTATTTCGA CGCGCTTTTTGTCTCCGGCAGCTTACAAGGGCTGGGTTATGCAGAAGTGA CGACGACTTGAAGCGATTGGCGGACAGCATACAACTGTACCGCATTGGAA CCAACACCTTTATACATTCGACATTGCCAGGCATCAGCAAACCAAAGGTG AGCTTTGGAAGGCATTCATAGTCACTCCGCTCTTGGCGTTATCTTTCTCA TCTGCTTTAAAACGCCCATTAGTAGCCCTTCGGACACGAGGACCTGACGT GGTTGAGTTGTCGATGCTCACCTGCTTGTCAGAAAGCTAAGTGGCGGCAG GCCAAGCATTAAAGCAGCATTGCAAAAAAGCATTCCGTTTGACAATGTTT CGTCCTCAGTTTTAGCAACACCGCTTTAACCGGCCCCGCGTCCGTCACTC AGGTGGTGCCGCTCGGCGATGCGGCGAAGGATTTCATCGCCGCGACTCCC GCCGGGCCGGCAACGTCGCTACCGGAGCTGCTGGCGACAGCGCTGTCGGA GCTGTGCAAGGTGAAGCCGCAGGGGCTCGACGCCGTGCAGTGGCTTGGGG AATGGCTGCTCGCCAACAACCCCAACCAGCCCACCGTGCAGGAGCCCGAC TGTGGCCAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13163:792..1653+

>mRNA_P-wetherbeei_contig13163.1.1 ID=mRNA_P-wetherbeei_contig13163.1.1|Name=mRNA_P-wetherbeei_contig13163.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig13163:792..1653+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGTGGCAAAAGAAGGCGGCGGCCGTGTTCACTGCGGGGCGAAAGCT
GGAAGACGACGGGCTTTACGTGATCGGCATCTTTGACCTTGAGCCTGCAG
GTATCCTCATCCGAGCGTACAATCAAGCAACGTCAGCGCAGTACACGCTG
TCGCCTTCCGAACTCGAACTTACAAGGGCTGGGTTATGCAGAAGTGACGA
CGACTTGAAGCGATTGGCGGACAGCATACAACTGTACCGCATTGGAACCA
ACACCTTTATACATTCGACATTGCCAGGCATCAGCAAACCAAAGGTGGTG
CCGCTCGGCGATGCGGCGAAGGATTTCATCGCCGCGACTCCCGCCGGGCC
GGCAACGTCGCTACCGGAGCTGCTGGCGACAGCGCTGTCGGAGCTGTGCA
AGGTGAAGCCGCAGGGGCTCGACGCCGTGCAGTGGCTTGGGGAATGGCTG
CTCGCCAACAACCCCAACCAGCCCACCGTGCAGGAGCCCGACTGTGGCCA
GTGA
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