mRNA_P-wetherbeei_contig13155.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13155.1.1
Unique NamemRNA_P-wetherbeei_contig13155.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A2H5WNA6_9BACT (YkuD domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5WNA6_9BACT)

HSP 1 Score: 102 bits (254), Expect = 3.700e-24
Identity = 62/161 (38.51%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   34 RGDPVP----TAFIDKSQQTLTVHGQV-----FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFA-FQARSQTSQ----------LGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLI 456
            +G P P    +  I K+++ L ++  +     F +A G  P+G+KEREGD +TPEG + V +K    +F+ +LGLSYP   D  R +  G    +D + ++A  Q  Q          LGG +GIHGGG+ R+WTLGCIAL+N+  E +Y +L  G  V I
Sbjct:   53 KGAPFPLRQPSVEIYKARRVLRLYDGMRLLAEFPIALGSRPEGDKEREGDRKTPEGSFYVCEKHYSPRFYLFLGLSYPAPDDAERGKLRGL---IDESQYRAILQAHQEGRCPPWDTPLGGAIGIHGGGTHRDWTLGCIALDNAHIELLYVLLPVGTKVQI 210          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A3M2B5H1_9BACT (YkuD domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A3M2B5H1_9BACT)

HSP 1 Score: 102 bits (253), Expect = 4.750e-24
Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 1
Query:   49 PTAFIDKSQQTLTVHGQ-----VFHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDF-AFQARSQT-------SQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459
            P   I+K ++ L +  +      F +A   +P+G+K+REGD RTPEG Y V +K    +F+ +LGLSYP   D  R +REGR       A Q   Q+       + LGG +GIHGGG  R+WTLGCIAL +   E +Y +L  G  V IV
Sbjct:   58 PAVRIEKHRRRLILLERGTPIAEFPIALSGAPEGDKQREGDRRTPEGDYYVCEKHPSRRFYLFLGLSYPALKDAERGKREGRINEAQHQAIQKAIQSGTCPPWDTPLGGAIGIHGGGVGRDWTLGCIALPDEAVEILYVLLPVGTPVRIV 207          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: UPI0013786A98 (L,D-transpeptidase family protein n=1 Tax=Rhodobacter ruber TaxID=1985673 RepID=UPI0013786A98)

HSP 1 Score: 98.6 bits (244), Expect = 3.630e-23
Identity = 53/154 (34.42%), Postives = 88/154 (57.14%), Query Frame = 1
Query:   25 ISWRGDPVPTAFIDKSQQTLTV--HGQV---FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQTSQLGGYVGIHGGG----SKRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459
            + +RG  V +  + K+ + + +  +G+V   + +A G +PQG+K+ EGDG+TPEG Y +  K+  ++FH  LG+SYP  AD               A  A +Q    GG + IHGG     ++R+WT GCIA+ N + E++Y +++PG  + I+
Sbjct:   26 LKYRGPEVTSVQVHKADRKMYLLHNGRVLESYDIALGFAPQGHKQFEGDGKTPEGTYYITHKNPRSRFHLSLGISYPNIAD---------------AEYAEAQDKSPGGDIFIHGGPLGPIARRDWTEGCIAVTNREMEQIYSMVEPGTVIHIL 164          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A7X7CGR7_9CLOT (L,D-transpeptidase family protein n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X7CGR7_9CLOT)

HSP 1 Score: 99.0 bits (245), Expect = 1.460e-22
Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  103 FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQ--------TSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLI 456
            F +A G +P+G+K +EGDG+TPEG Y +  ++ E+ F+R+LGLSYP   D  R    G            SQ         + LGG VGIHGGG+  +WTLGCIALEN   + ++E  +    VLI
Sbjct:  112 FKIALGGNPEGDKNKEGDGKTPEGEYYICTRNTESNFYRFLGLSYPNVEDAQRGLDSGLISSKTLKSIKASQELKKQPAWNTPLGGAVGIHGGGNASDWTLGCIALENKAVDVIWEYAKIKTPVLI 237          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: UPI000CD17983 (L,D-transpeptidase family protein n=1 Tax=Tabrizicola aquatica TaxID=909926 RepID=UPI000CD17983)

HSP 1 Score: 96.3 bits (238), Expect = 2.880e-22
Identity = 54/154 (35.06%), Postives = 85/154 (55.19%), Query Frame = 1
Query:   25 ISWRGDPVPTAFIDKSQQTLTV--HGQV---FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQTSQLGGYVGIHGGGS----KRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459
            + +RG  V    + K+ + + +  H +V   + +A G +P G+K+ EGDG+TPEG Y +  K+  +QFH  LG+SYP  AD+              AF A +Q    GG + IHGG +     R+WT GC+AL +++ E VY ++ PG  + I+
Sbjct:   26 LKYRGPEVTQVQVHKTDRKMYLFHHDKVLKSYDIALGFAPDGHKQFEGDGKTPEGQYFISHKNPNSQFHLSLGISYPNEADI--------------AF-AEAQGKSPGGDIFIHGGPNGKIRSRDWTWGCVALTDNEMEVVYSMVNPGTPIFIL 164          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: UPI001988AAAA (L,D-transpeptidase family protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI001988AAAA)

HSP 1 Score: 96.3 bits (238), Expect = 4.860e-22
Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 1
Query:   49 PTAFIDKSQQTLTVHG-----QVFHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDF--------AFQARSQTSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLI 456
            P   I K  +TL++       + + +  G SP G+KE EGDG+TPEG +RV  K++++ F+  LGL+YP   D  R  RE      +         + Q   Q + LGG + IHGGG++ +WT GC ALEN + +++++ +  G  V I
Sbjct:   36 PHIVIKKKARTLSIFDDGKFVKTYKIVLGASPNGDKEIEGDGKTPEGDFRVDRKNEKSSFYLSLGLNYPNVKDAKRGLREKLITQAEHDAILQAIESKQVPPQKTALGGEIFIHGGGTEDDWTQGCAALENEEIKEIFDAISIGTTVTI 184          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A2P9GYA9_9DELT (YkuD domain-containing protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2P9GYA9_9DELT)

HSP 1 Score: 97.1 bits (240), Expect = 5.720e-22
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  103 FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGR-----WCWLDFAFQARS---QTSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459
            FH+A G +P+G+K   GDGRTPEG Y V  K+  +QF++ LG++YP   +   A   G      +C +  A  A       + LGG + IHGGG +++WTLGCIA++NS  ++++ ++Q G  V I+
Sbjct:   96 FHIALGFNPKGDKYFRGDGRTPEGEYFVCSKNSSSQFYKSLGINYPNPRNAQNALSCGMISDNDYCLIKQANDAMRLPPSNTALGGQIFIHGGGCQKDWTLGCIAVQNSAIDELFSVVQVGTPVFIM 222          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: V7EN62_9RHOB (YkuD domain-containing protein n=1 Tax=Rhodobacter sp. CACIA14H1 TaxID=1408890 RepID=V7EN62_9RHOB)

HSP 1 Score: 95.1 bits (235), Expect = 8.750e-22
Identity = 50/152 (32.89%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   31 WRGDPVPTAFIDKSQQTLTV--HGQV---FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQTSQLGGYVGIHGGGSK----RNWTLGCIALENSDAEKVYEILQPGDGVLIV 459
            + G  V +  + K+++ + +  H +V   + +A G +P+G+K+ EGDG+TPEG Y +  K+  ++FH  LG+SYP +AD             +FA   ++     GG + IHGG +K    R+WT GCIA+ + + E++Y +++PG  + I+
Sbjct:   31 YNGPEVTSVQVHKAERKMYLLHHSRVLRSYDIALGFTPEGHKQFEGDGKTPEGTYYITHKNPNSEFHLSLGISYPNQADR------------EFA---KAADKSPGGDIFIHGGPNKPVSRRDWTAGCIAVTDREMERIYSMVKPGTPIHIL 167          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: UPI001BBF769B (L,D-transpeptidase family protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=UPI001BBF769B)

HSP 1 Score: 94.7 bits (234), Expect = 1.090e-21
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   31 WRGDPVPTAFIDKSQQTLTVHGQ-----VFHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQTSQLGGYVGIHGGGS----KRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459
            + G  V    + K+ + + +  Q      + +A G +P+G+K+ EGDG+TPEG Y +  K+ +++FH  LG+SYP  AD+              AF A +Q    GG + IHGG +     R+WT GCIAL + + E+VY ++ PG  + I+
Sbjct:   26 YHGPEVTQIQVHKADRKMYLFHQDRVLKTYDIALGFTPEGHKQFEGDGKTPEGQYYISHKNPDSKFHLSLGISYPNEADI--------------AF-AEAQGKSPGGDIFIHGGPNTPITSRDWTWGCIALTDREMERVYAMVNPGTPIFIL 162          
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A8J7W0Z1_9FIRM (L,D-transpeptidase n=1 Tax=Sinanaerobacter chloroacetimidivorans TaxID=2818044 RepID=A0A8J7W0Z1_9FIRM)

HSP 1 Score: 94.4 bits (233), Expect = 1.160e-21
Identity = 51/128 (39.84%), Postives = 74/128 (57.81%), Query Frame = 1
Query:   97 QVFHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARS--------QTSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLI 456
            Q F ++ G SP G K R GDGRTPEG Y +  K+  ++F  +LG+SYP  AD  R  REG     ++ F   S          + LGG +GIHG G+ R+WT GC+A+E+ D + +++  + G+ V I
Sbjct:   23 QTFKISLGFSPDGEKLRNGDGRTPEGSYYICTKNPVSKFTLFLGISYPNIADAERGFREGLISQEEYDFIKVSIEQGKRPCWETALGGKIGIHGMGTSRDWTAGCVAMEDEDIKWLWDHTELGNPVHI 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H5WNA6_9BACT3.700e-2438.51YkuD domain-containing protein n=2 Tax=Bacteria Ta... [more]
A0A3M2B5H1_9BACT4.750e-2441.33YkuD domain-containing protein n=1 Tax=Armatimonad... [more]
UPI0013786A983.630e-2334.42L,D-transpeptidase family protein n=1 Tax=Rhodobac... [more]
A0A7X7CGR7_9CLOT1.460e-2242.06L,D-transpeptidase family protein n=1 Tax=Clostrid... [more]
UPI000CD179832.880e-2235.06L,D-transpeptidase family protein n=1 Tax=Tabrizic... [more]
UPI001988AAAA4.860e-2235.57L,D-transpeptidase family protein n=1 Tax=Pyrinomo... [more]
A0A2P9GYA9_9DELT5.720e-2239.37YkuD domain-containing protein n=2 Tax=Deltaproteo... [more]
V7EN62_9RHOB8.750e-2232.89YkuD domain-containing protein n=1 Tax=Rhodobacter... [more]
UPI001BBF769B1.090e-2134.21L,D-transpeptidase family protein n=1 Tax=Rhodobac... [more]
A0A8J7W0Z1_9FIRM1.160e-2139.84L,D-transpeptidase n=1 Tax=Sinanaerobacter chloroa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13155contigP-wetherbeei_contig13155:340..810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog373994.Riv7116_6664
PFAMsYkuD
Model size471
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.84e-21
EggNOG OGsCOG3034@1|root,COG3034@2|Bacteria,1G6BQ@1117|Cyanobacteria,1HMPZ@1161|Nostocales
DescriptionPFAM L,D-transpeptidase catalytic domain
Cds size471
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185975.4383373-CDS-P-wetherbeei_contig13155:339..8101683185975.4383373-CDS-P-wetherbeei_contig13155:339..810Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13155 340..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13155.1.1prot_P-wetherbeei_contig13155.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13155 340..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13155.1.1

>prot_P-wetherbeei_contig13155.1.1 ID=prot_P-wetherbeei_contig13155.1.1|Name=mRNA_P-wetherbeei_contig13155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp
VLLLLAFLISWRGDPVPTAFIDKSQQTLTVHGQVFHVAFGPSPQGNKERE
GDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFA
FQARSQTSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGV
LIVSGI*
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mRNA from alignment at P-wetherbeei_contig13155:340..810-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13155.1.1 ID=mRNA_P-wetherbeei_contig13155.1.1|Name=mRNA_P-wetherbeei_contig13155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig13155:340..810- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTGCTCTTGCTGGCTTTTCTCATTTCCTGGCGTGGAGATCCGGTCCC GACGGCGTTCATCGATAAGAGCCAGCAAACCCTGACGGTTCACGGCCAGG TCTTCCACGTCGCCTTCGGCCCCAGTCCTCAGGGGAACAAAGAAAGGGAG GGGGATGGGCGGACTCCTGAGGGTCTCTATCGCGTCATCGATAAAAGCCA GGAGACGCAATTCCATCGCTGGCTGGGCCTGAGCTATCCCGGTCGCGCGG ATATGTGGCGAGCCCGCAGGGAAGGCCGCTGGTGCTGGCTGGACTTTGCG TTTCAGGCCCGTTCGCAGACCAGCCAATTAGGCGGCTATGTTGGAATTCA CGGCGGCGGCAGCAAAAGAAACTGGACGCTCGGTTGCATCGCGCTCGAGA ATTCGGATGCCGAGAAGGTCTACGAGATCCTGCAACCCGGAGACGGTGTC CTGATTGTTTCCGGTATCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13155:340..810-

>mRNA_P-wetherbeei_contig13155.1.1 ID=mRNA_P-wetherbeei_contig13155.1.1|Name=mRNA_P-wetherbeei_contig13155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig13155:340..810- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTGCTCTTGCTGGCTTTTCTCATTTCCTGGCGTGGAGATCCGGTCCC
GACGGCGTTCATCGATAAGAGCCAGCAAACCCTGACGGTTCACGGCCAGG
TCTTCCACGTCGCCTTCGGCCCCAGTCCTCAGGGGAACAAAGAAAGGGAG
GGGGATGGGCGGACTCCTGAGGGTCTCTATCGCGTCATCGATAAAAGCCA
GGAGACGCAATTCCATCGCTGGCTGGGCCTGAGCTATCCCGGTCGCGCGG
ATATGTGGCGAGCCCGCAGGGAAGGCCGCTGGTGCTGGCTGGACTTTGCG
TTTCAGGCCCGTTCGCAGACCAGCCAATTAGGCGGCTATGTTGGAATTCA
CGGCGGCGGCAGCAAAAGAAACTGGACGCTCGGTTGCATCGCGCTCGAGA
ATTCGGATGCCGAGAAGGTCTACGAGATCCTGCAACCCGGAGACGGTGTC
CTGATTGTTTCCGGTATCTAG
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