mRNA_P-wetherbeei_contig13155.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A2H5WNA6_9BACT (YkuD domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2H5WNA6_9BACT) HSP 1 Score: 102 bits (254), Expect = 3.700e-24 Identity = 62/161 (38.51%), Postives = 91/161 (56.52%), Query Frame = 1 Query: 34 RGDPVP----TAFIDKSQQTLTVHGQV-----FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFA-FQARSQTSQ----------LGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLI 456 +G P P + I K+++ L ++ + F +A G P+G+KEREGD +TPEG + V +K +F+ +LGLSYP D R + G +D + ++A Q Q LGG +GIHGGG+ R+WTLGCIAL+N+ E +Y +L G V I Sbjct: 53 KGAPFPLRQPSVEIYKARRVLRLYDGMRLLAEFPIALGSRPEGDKEREGDRKTPEGSFYVCEKHYSPRFYLFLGLSYPAPDDAERGKLRGL---IDESQYRAILQAHQEGRCPPWDTPLGGAIGIHGGGTHRDWTLGCIALDNAHIELLYVLLPVGTKVQI 210
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A3M2B5H1_9BACT (YkuD domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A3M2B5H1_9BACT) HSP 1 Score: 102 bits (253), Expect = 4.750e-24 Identity = 62/150 (41.33%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 49 PTAFIDKSQQTLTVHGQ-----VFHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDF-AFQARSQT-------SQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459 P I+K ++ L + + F +A +P+G+K+REGD RTPEG Y V +K +F+ +LGLSYP D R +REGR A Q Q+ + LGG +GIHGGG R+WTLGCIAL + E +Y +L G V IV Sbjct: 58 PAVRIEKHRRRLILLERGTPIAEFPIALSGAPEGDKQREGDRRTPEGDYYVCEKHPSRRFYLFLGLSYPALKDAERGKREGRINEAQHQAIQKAIQSGTCPPWDTPLGGAIGIHGGGVGRDWTLGCIALPDEAVEILYVLLPVGTPVRIV 207
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: UPI0013786A98 (L,D-transpeptidase family protein n=1 Tax=Rhodobacter ruber TaxID=1985673 RepID=UPI0013786A98) HSP 1 Score: 98.6 bits (244), Expect = 3.630e-23 Identity = 53/154 (34.42%), Postives = 88/154 (57.14%), Query Frame = 1 Query: 25 ISWRGDPVPTAFIDKSQQTLTV--HGQV---FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQTSQLGGYVGIHGGG----SKRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459 + +RG V + + K+ + + + +G+V + +A G +PQG+K+ EGDG+TPEG Y + K+ ++FH LG+SYP AD A A +Q GG + IHGG ++R+WT GCIA+ N + E++Y +++PG + I+ Sbjct: 26 LKYRGPEVTSVQVHKADRKMYLLHNGRVLESYDIALGFAPQGHKQFEGDGKTPEGTYYITHKNPRSRFHLSLGISYPNIAD---------------AEYAEAQDKSPGGDIFIHGGPLGPIARRDWTEGCIAVTNREMEQIYSMVEPGTVIHIL 164
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A7X7CGR7_9CLOT (L,D-transpeptidase family protein n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X7CGR7_9CLOT) HSP 1 Score: 99.0 bits (245), Expect = 1.460e-22 Identity = 53/126 (42.06%), Postives = 72/126 (57.14%), Query Frame = 1 Query: 103 FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQ--------TSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLI 456 F +A G +P+G+K +EGDG+TPEG Y + ++ E+ F+R+LGLSYP D R G SQ + LGG VGIHGGG+ +WTLGCIALEN + ++E + VLI Sbjct: 112 FKIALGGNPEGDKNKEGDGKTPEGEYYICTRNTESNFYRFLGLSYPNVEDAQRGLDSGLISSKTLKSIKASQELKKQPAWNTPLGGAVGIHGGGNASDWTLGCIALENKAVDVIWEYAKIKTPVLI 237
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: UPI000CD17983 (L,D-transpeptidase family protein n=1 Tax=Tabrizicola aquatica TaxID=909926 RepID=UPI000CD17983) HSP 1 Score: 96.3 bits (238), Expect = 2.880e-22 Identity = 54/154 (35.06%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 25 ISWRGDPVPTAFIDKSQQTLTV--HGQV---FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQTSQLGGYVGIHGGGS----KRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459 + +RG V + K+ + + + H +V + +A G +P G+K+ EGDG+TPEG Y + K+ +QFH LG+SYP AD+ AF A +Q GG + IHGG + R+WT GC+AL +++ E VY ++ PG + I+ Sbjct: 26 LKYRGPEVTQVQVHKTDRKMYLFHHDKVLKSYDIALGFAPDGHKQFEGDGKTPEGQYFISHKNPNSQFHLSLGISYPNEADI--------------AF-AEAQGKSPGGDIFIHGGPNGKIRSRDWTWGCVALTDNEMEVVYSMVNPGTPIFIL 164
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: UPI001988AAAA (L,D-transpeptidase family protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI001988AAAA) HSP 1 Score: 96.3 bits (238), Expect = 4.860e-22 Identity = 53/149 (35.57%), Postives = 82/149 (55.03%), Query Frame = 1 Query: 49 PTAFIDKSQQTLTVHG-----QVFHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDF--------AFQARSQTSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLI 456 P I K +TL++ + + + G SP G+KE EGDG+TPEG +RV K++++ F+ LGL+YP D R RE + + Q Q + LGG + IHGGG++ +WT GC ALEN + +++++ + G V I Sbjct: 36 PHIVIKKKARTLSIFDDGKFVKTYKIVLGASPNGDKEIEGDGKTPEGDFRVDRKNEKSSFYLSLGLNYPNVKDAKRGLREKLITQAEHDAILQAIESKQVPPQKTALGGEIFIHGGGTEDDWTQGCAALENEEIKEIFDAISIGTTVTI 184
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A2P9GYA9_9DELT (YkuD domain-containing protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A2P9GYA9_9DELT) HSP 1 Score: 97.1 bits (240), Expect = 5.720e-22 Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 1 Query: 103 FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGR-----WCWLDFAFQARS---QTSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459 FH+A G +P+G+K GDGRTPEG Y V K+ +QF++ LG++YP + A G +C + A A + LGG + IHGGG +++WTLGCIA++NS ++++ ++Q G V I+ Sbjct: 96 FHIALGFNPKGDKYFRGDGRTPEGEYFVCSKNSSSQFYKSLGINYPNPRNAQNALSCGMISDNDYCLIKQANDAMRLPPSNTALGGQIFIHGGGCQKDWTLGCIAVQNSAIDELFSVVQVGTPVFIM 222
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: V7EN62_9RHOB (YkuD domain-containing protein n=1 Tax=Rhodobacter sp. CACIA14H1 TaxID=1408890 RepID=V7EN62_9RHOB) HSP 1 Score: 95.1 bits (235), Expect = 8.750e-22 Identity = 50/152 (32.89%), Postives = 88/152 (57.89%), Query Frame = 1 Query: 31 WRGDPVPTAFIDKSQQTLTV--HGQV---FHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQTSQLGGYVGIHGGGSK----RNWTLGCIALENSDAEKVYEILQPGDGVLIV 459 + G V + + K+++ + + H +V + +A G +P+G+K+ EGDG+TPEG Y + K+ ++FH LG+SYP +AD +FA ++ GG + IHGG +K R+WT GCIA+ + + E++Y +++PG + I+ Sbjct: 31 YNGPEVTSVQVHKAERKMYLLHHSRVLRSYDIALGFTPEGHKQFEGDGKTPEGTYYITHKNPNSEFHLSLGISYPNQADR------------EFA---KAADKSPGGDIFIHGGPNKPVSRRDWTAGCIAVTDREMERIYSMVKPGTPIHIL 167
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: UPI001BBF769B (L,D-transpeptidase family protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=UPI001BBF769B) HSP 1 Score: 94.7 bits (234), Expect = 1.090e-21 Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 1 Query: 31 WRGDPVPTAFIDKSQQTLTVHGQ-----VFHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARSQTSQLGGYVGIHGGGS----KRNWTLGCIALENSDAEKVYEILQPGDGVLIV 459 + G V + K+ + + + Q + +A G +P+G+K+ EGDG+TPEG Y + K+ +++FH LG+SYP AD+ AF A +Q GG + IHGG + R+WT GCIAL + + E+VY ++ PG + I+ Sbjct: 26 YHGPEVTQIQVHKADRKMYLFHQDRVLKTYDIALGFTPEGHKQFEGDGKTPEGQYYISHKNPDSKFHLSLGISYPNEADI--------------AF-AEAQGKSPGGDIFIHGGPNTPITSRDWTWGCIALTDREMERVYAMVNPGTPIFIL 162
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Match: A0A8J7W0Z1_9FIRM (L,D-transpeptidase n=1 Tax=Sinanaerobacter chloroacetimidivorans TaxID=2818044 RepID=A0A8J7W0Z1_9FIRM) HSP 1 Score: 94.4 bits (233), Expect = 1.160e-21 Identity = 51/128 (39.84%), Postives = 74/128 (57.81%), Query Frame = 1 Query: 97 QVFHVAFGPSPQGNKEREGDGRTPEGLYRVIDKSQETQFHRWLGLSYPGRADMWRARREGRWCWLDFAFQARS--------QTSQLGGYVGIHGGGSKRNWTLGCIALENSDAEKVYEILQPGDGVLI 456 Q F ++ G SP G K R GDGRTPEG Y + K+ ++F +LG+SYP AD R REG ++ F S + LGG +GIHG G+ R+WT GC+A+E+ D + +++ + G+ V I Sbjct: 23 QTFKISLGFSPDGEKLRNGDGRTPEGSYYICTKNPVSKFTLFLGISYPNIADAERGFREGLISQEEYDFIKVSIEQGKRPCWETALGGKIGIHGMGTSRDWTAGCVAMEDEDIKWLWDHTELGNPVHI 150 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13155.1.1 >prot_P-wetherbeei_contig13155.1.1 ID=prot_P-wetherbeei_contig13155.1.1|Name=mRNA_P-wetherbeei_contig13155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=157bp VLLLLAFLISWRGDPVPTAFIDKSQQTLTVHGQVFHVAFGPSPQGNKEREback to top mRNA from alignment at P-wetherbeei_contig13155:340..810- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13155.1.1 ID=mRNA_P-wetherbeei_contig13155.1.1|Name=mRNA_P-wetherbeei_contig13155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig13155:340..810- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13155:340..810- >mRNA_P-wetherbeei_contig13155.1.1 ID=mRNA_P-wetherbeei_contig13155.1.1|Name=mRNA_P-wetherbeei_contig13155.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=471bp|location=Sequence derived from alignment at P-wetherbeei_contig13155:340..810- (Phaeothamnion wetherbeei SAG_119_79)back to top |