mRNA_P-wetherbeei_contig131.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig131.6.1
Unique NamemRNA_P-wetherbeei_contig131.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig131.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig131contigP-wetherbeei_contig131:11143..11796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size655
Hectar predicted targeting categorymitochondrion
Exons1
Cds size462
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185973.7234092-CDS-P-wetherbeei_contig131:11142..116041683185973.7234092-CDS-P-wetherbeei_contig131:11142..11604Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig131 11143..11604 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185973.732277-UTR-P-wetherbeei_contig131:11604..117961683185973.732277-UTR-P-wetherbeei_contig131:11604..11796Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig131 11605..11796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig131.6.1prot_P-wetherbeei_contig131.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig131 11143..11604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig131.6.1

>prot_P-wetherbeei_contig131.6.1 ID=prot_P-wetherbeei_contig131.6.1|Name=mRNA_P-wetherbeei_contig131.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
AQQLLVLRHRLHGAFARHTQAPKAPLPPASCDAVSAAAALLHDPSIRQAA
ANHRRPPGGGTVGGGGGRGGGRDISGGDGSSAGGYNGYGGRGGRTGNGGD
GGGGGGGGGTTGGGGSSSGCRAPVSVVMRPVAILAHGRGRGSRGGRGGRG
RAL*
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mRNA from alignment at P-wetherbeei_contig131:11143..11796+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig131.6.1 ID=mRNA_P-wetherbeei_contig131.6.1|Name=mRNA_P-wetherbeei_contig131.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=654bp|location=Sequence derived from alignment at P-wetherbeei_contig131:11143..11796+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCAGCAACTGTTGGTGCTCCGCCACCGGCTGCACGGGGCGTTCGCCCG
CCACACGCAGGCCCCCAAGGCACCGCTACCGCCGGCGAGCTGCGACGCCG
TCTCCGCCGCCGCTGCACTGCTGCACGATCCTTCCATCCGGCAGGCCGCC
GCCAACCACCGCCGCCCGCCCGGCGGCGGCACTGTTGGAGGCGGCGGCGG
GCGCGGCGGCGGGCGTGACATCAGTGGCGGTGACGGTAGCAGCGCTGGCG
GCTACAATGGATATGGCGGGCGGGGAGGAAGGACGGGCAATGGTGGCGAC
GGCGGCGGCGGCGGCGGCGGCGGCGGCACCACCGGTGGCGGTGGCAGCAG
CAGTGGCTGCAGGGCGCCGGTCTCCGTCGTGATGCGGCCGGTGGCGATTC
TGGCGCACGGCCGCGGGCGGGGCAGCCGTGGTGGCCGCGGTGGGCGTGGA
AGAGCGCTGTGAGCACTGCAAAGCCGGGCAGGACCGCGTGAACAGCTCAT
GACAAACCCTATCTAACGATAAACGCCGAGGAGTCATACGAAACACGGCT
TCGGAAAAATACCTTGGAAGGTTAATGAAGATGGGGACAAACCGAGTTCT
CTCCAGCTTCCGTTTAATCCGTATTTAGCTCCACCTGTTAAAAAAATTGA
TGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig131:11143..11796+

>mRNA_P-wetherbeei_contig131.6.1 ID=mRNA_P-wetherbeei_contig131.6.1|Name=mRNA_P-wetherbeei_contig131.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig131:11143..11796+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCAGCAACTGTTGGTGCTCCGCCACCGGCTGCACGGGGCGTTCGCCCG
CCACACGCAGGCCCCCAAGGCACCGCTACCGCCGGCGAGCTGCGACGCCG
TCTCCGCCGCCGCTGCACTGCTGCACGATCCTTCCATCCGGCAGGCCGCC
GCCAACCACCGCCGCCCGCCCGGCGGCGGCACTGTTGGAGGCGGCGGCGG
GCGCGGCGGCGGGCGTGACATCAGTGGCGGTGACGGTAGCAGCGCTGGCG
GCTACAATGGATATGGCGGGCGGGGAGGAAGGACGGGCAATGGTGGCGAC
GGCGGCGGCGGCGGCGGCGGCGGCGGCACCACCGGTGGCGGTGGCAGCAG
CAGTGGCTGCAGGGCGCCGGTCTCCGTCGTGATGCGGCCGGTGGCGATTC
TGGCGCACGGCCGCGGGCGGGGCAGCCGTGGTGGCCGCGGTGGGCGTGGA
AGAGCGCTGTGA
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