mRNA_P-wetherbeei_contig13082.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13082.1.1
Unique NamemRNA_P-wetherbeei_contig13082.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: A0A6H5K5D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5D2_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 8.440e-34
Identity = 75/131 (57.25%), Postives = 92/131 (70.23%), Query Frame = 1
Query:   34 WQMLPQFACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPALQCK-----AIRGCELVAVLLCEGLVEDPVVVRRLIRQV 411
            W  +P   CLY++DL++ AC AATASTDDSELLELQEAGV +L  V + FA VPD D D+    +V G++V      L+ SISQIT AARPAL CK     A RGCELV  L+ EGLV+D VV++RL+RQV
Sbjct:   29 WAQVPALLCLYLEDLVTLACAAATASTDDSELLELQEAGVMMLTVVARTFAQVPDSDEDELGLVVVLGKSVRAPTLALELSISQITGAARPALGCKVSPRLAQRGCELVVTLVREGLVKDKVVLKRLVRQV 159          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: D7FJ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ51_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 8.620e-27
Identity = 64/115 (55.65%), Postives = 77/115 (66.96%), Query Frame = 1
Query:   34 WQMLPQFACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPALQCK-----AIRGCELVAVLLCE 363
            W  +P   CLY++DL++ AC AATASTDDSELLELQEAGV +L  V + FA VPD D D+    +V G++V      L+ SISQIT AARPAL CK     A RGCELV  L+ E
Sbjct:  454 WAQVPALLCLYLEDLVTLACAAATASTDDSELLELQEAGVMMLTEVARTFAQVPDSDEDELGLVVVLGKSVRAPTLALELSISQITGAARPALGCKVSPRLAQRGCELVVTLVRE 568          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: A0A835Z1V0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.640e-11
Identity = 52/118 (44.07%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  121 SELLELQEAGVRLLITVVQAFA----------------AVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPALQCKA-----IRGCELVAVLLCEGLVEDPVVVRRLIRQV 411
            SEL ELQ  GV LL+  +QA+A                  PDPD D + A            R L+QS+SQ+ SAARPAL C        RGC LV  L+ EGLV D VV+RRL+RQV
Sbjct: 1986 SELHELQAGGVDLLLEALQAYANAHTYNRIAASCDTIAQAPDPDADASGA------------RALEQSVSQMASAARPALACGVWPPLLTRGCRLVLALVREGLVTDVVVLRRLVRQV 2091          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: K0R547_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R547_THAOC)

HSP 1 Score: 66.6 bits (161), Expect = 4.310e-10
Identity = 50/151 (33.11%), Postives = 77/151 (50.99%), Query Frame = 1
Query:    4 GGGAGVGALTWQMLPQFACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPALQCKAIR---------------GCELVAVLLCEGLVEDPVVVRRLIRQV 411
            GG  GVG      LP F   +++  ++ AC+A+TA++++SEL  +Q AG+RL+ +V  AFAA  DP+                  R L Q +SQI S+ R  L  +++                GC+ +  LL   L+ DPVV+RRL++ V
Sbjct: 1771 GGSPGVGL---HALPAF---FLEPFVNIACSASTATSNNSELPSVQAAGLRLMTSVTNAFAAHVDPEDGS---------------RVLSQYLSQIISSVRHGLNAESLATESTTGSSFHLLFSSGCDALYALLARELIADPVVMRRLVQPV 1900          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: A0A7S2M4Z2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M4Z2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.990e-9
Identity = 46/136 (33.82%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   43 LPQFACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPALQCKAI---------------RGCELVAVLLCEGLVEDPVVVRRLIR 405
            L  F  L++++L++TAC A+ A++++SEL  +Q +G+R LITV++AF    D  T+        G +V      L+Q  SQI SA R AL  +++                GC+ + V++  G V +PVV+RRL++
Sbjct: 1345 LHSFPVLHLEELVTTACIASAATSNNSELPSVQVSGLRFLITVLKAFGEELDASTND-------GTSV------LEQYSSQIISAVRHALNAESLLEESVATSGFHRLFAAGCDALFVMINGGFVSEPVVIRRLLQ 1467          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: A0A7S4UYX5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UYX5_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 5.800e-6
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   52 FACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPALQCKA---------------IRGCELVAVLLCEGLVEDPVVVRRLIRQV 411
            +   ++++LIS AC+ ATA++D +EL  LQ +G+R+LI +++ FA   DPD       + G  T       L+Q  +QI S+ + AL  +                + GCE +  L+   +V D V ++RL+R V
Sbjct:  398 YVAFHINELISAACSTATATSDQAELPSLQNSGLRVLIYLIKFFANALDPD-------LAGDGT-----SILEQFSAQIISSIKHALSSQDSSDGPGNDIRTRLLFMSGCEALYSLIENNMVSDTVGLKRLLRLV 520          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: A0A7S4V9H3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V9H3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.010e-6
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   52 FACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPALQCKA---------------IRGCELVAVLLCEGLVEDPVVVRRLIRQV 411
            +   ++++LIS AC+ ATA++D +EL  LQ +G+R+LI +++ FA   DPD       + G  T       L+Q  +QI S+ + AL  +                + GCE +  L+   +V D V ++RL+R V
Sbjct:  398 YVAFHINELISAACSTATATSDQAELPSLQNSGLRVLIYLIKFFANALDPD-------LAGDGT-----SILEQFSAQIISSIKHALSSQDSSDGPGNDIRTRLLFMSGCEALYSLIENNMVSDTVGLKRLLRLV 520          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: A0A7S1Z2J4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z2J4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.110e-6
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   52 FACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPALQCKA---------------IRGCELVAVLLCEGLVEDPVVVRRLIRQV 411
            +   ++++LIS AC+ ATA++D +EL  LQ +G+R+LI +++ FA   DPD       + G  T       L+Q  +QI S+ + AL  +                + GCE +  L+   +V D V ++RL+R V
Sbjct:  755 YVAFHINELISAACSTATATSDQAELPSLQNSGLRVLIYLIKFFANALDPD-------LAGDGT-----SILEQFSAQIISSIKHALSSQDSSDGPGNDNRTRLLFMSGCEALYSLIENNMVSDTVGLKRLLRLV 877          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: K3WQC4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQC4_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 8.480e-6
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 1
Query:   52 FACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPD 204
            F C+Y+D+ ++ AC AATAS D SEL   Q  G+RLL  +V  FAA  DP+
Sbjct: 1596 FLCMYLDEFVTLACHAATASADGSELQMFQSVGLRLLRVLVHKFAAARDPE 1646          
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Match: A0A7S1FZG8_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FZG8_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.090e-5
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   49 QFACLYVDDLISTACTAATASTDDSELLELQEAGVRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAARPAL---QCKAIRGC-ELVAVLLCEGLVEDPVVVRRLIR 405
            Q A  YV D IS AC+AATAS++ ++L  LQ+ G+  L  V+  F          A+    G  +   AP  LQ S +QITSA + AL   Q   I  C  +VA+L+ + LV D VV+ R+++
Sbjct:  135 QQAISYVKDFISAACSAATASSNHTDLAHLQQTGLEFLAAVISCFG------HSTASLEPAGLASKFAAPCLLQYS-TQITSAVKYALGSRQSNLINACTSVVALLVKKRLVVDNVVLCRIVK 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13082.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K5D2_9PHAE8.440e-3457.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ51_ECTSI8.620e-2755.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1V0_9STRA3.640e-1144.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0R547_THAOC4.310e-1033.11Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2M4Z2_9STRA1.990e-933.82Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S4UYX5_9STRA5.800e-631.11Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4V9H3_9STRA6.010e-631.11Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1Z2J4_9STRA6.110e-631.11Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K3WQC4_GLOUD8.480e-650.98Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1FZG8_9STRA1.090e-538.21Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13082contigP-wetherbeei_contig13082:888..1616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0R547
Model size411
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.06e-11
EggNOG OGsKOG1822@1|root,KOG1822@2759|Eukaryota,2XATX@2836|Bacillariophyta
Descriptionretrograde transport, endosome to Golgi
Cds size411
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185973.3738854-CDS-P-wetherbeei_contig13082:887..12121683185973.3738854-CDS-P-wetherbeei_contig13082:887..1212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13082 888..1212 +
1683185973.3844101-CDS-P-wetherbeei_contig13082:1530..16161683185973.3844101-CDS-P-wetherbeei_contig13082:1530..1616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13082 1531..1616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13082.1.1prot_P-wetherbeei_contig13082.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13082 888..1616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13082.1.1

>prot_P-wetherbeei_contig13082.1.1 ID=prot_P-wetherbeei_contig13082.1.1|Name=mRNA_P-wetherbeei_contig13082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MGGGAGVGALTWQMLPQFACLYVDDLISTACTAATASTDDSELLELQEAG
VRLLITVVQAFAAVPDPDTDQAAAAMVGGRTVAVAPRTLQQSISQITSAA
RPALQCKAIRGCELVAVLLCEGLVEDPVVVRRLIRQV
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mRNA from alignment at P-wetherbeei_contig13082:888..1616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13082.1.1 ID=mRNA_P-wetherbeei_contig13082.1.1|Name=mRNA_P-wetherbeei_contig13082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig13082:888..1616+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGGCGGTGCCGGGGTCGGCGCGCTGACGTGGCAGATGCTGCCGCA ATTCGCATGCCTGTACGTGGACGACCTGATCAGCACAGCGTGCACAGCGG CGACAGCGTCGACGGACGACAGCGAGCTGCTCGAGCTGCAGGAGGCCGGT GTCCGGCTGCTCATCACGGTGGTACAGGCCTTCGCGGCGGTGCCCGACCC CGATACGGACCAGGCCGCTGCGGCGATGGTGGGCGGGCGGACGGTGGCGG TGGCGCCGCGGACGCTGCAGCAGTCCATCTCGCAGATCACCAGCGCGGCC CGGCCCGCGCTCCAGTGCAAGGCGAGTAGGCACTTGTTGCGCTGCTGAAA GTTTTCCTATGGTTGGTGTGAGGCCTGCTCTTATCCGTCCTATTCAGGAA GGCTTTAAGTGGCGGCAAAAATTCGTTGAGGTGCAGCTACAACAGGTGAT TGCTGCAGAGGAGACTTTCATTGACTTGAAGTTTCATAGAACGTAATACT GGAGGTGCGTAGTGGGACGTGGGACTTCGCCCGGTCTGCGATAGCTGCTG CTGCGGCCACTTCTACAAGTCTAGGTGTCACTGATCCTTCGCTTCCCCGA TTTACATATTCGCGGCATACGCAGGTATCGCCGTCGCTGGTAGTCCGCGG CTGTGAGCTCGTGGCGGTGCTTCTCTGCGAGGGGCTCGTCGAGGACCCGG TGGTCGTCCGCCGCCTCATCCGGCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13082:888..1616+

>mRNA_P-wetherbeei_contig13082.1.1 ID=mRNA_P-wetherbeei_contig13082.1.1|Name=mRNA_P-wetherbeei_contig13082.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig13082:888..1616+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGGCGGTGCCGGGGTCGGCGCGCTGACGTGGCAGATGCTGCCGCA
ATTCGCATGCCTGTACGTGGACGACCTGATCAGCACAGCGTGCACAGCGG
CGACAGCGTCGACGGACGACAGCGAGCTGCTCGAGCTGCAGGAGGCCGGT
GTCCGGCTGCTCATCACGGTGGTACAGGCCTTCGCGGCGGTGCCCGACCC
CGATACGGACCAGGCCGCTGCGGCGATGGTGGGCGGGCGGACGGTGGCGG
TGGCGCCGCGGACGCTGCAGCAGTCCATCTCGCAGATCACCAGCGCGGCC
CGGCCCGCGCTCCAGTGCAAGGCGATCCGCGGCTGTGAGCTCGTGGCGGT
GCTTCTCTGCGAGGGGCTCGTCGAGGACCCGGTGGTCGTCCGCCGCCTCA
TCCGGCAGGTG
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