mRNA_P-wetherbeei_contig1305.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1305.2.1
Unique NamemRNA_P-wetherbeei_contig1305.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1305.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1305contigP-wetherbeei_contig1305:3819..6477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size932
Hectar predicted targeting categoryother localisation
Exons8
Cds size564
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1305.2.1prot_P-wetherbeei_contig1305.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1305 3819..6023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.2859497-CDS-P-wetherbeei_contig1305:3818..40001683185972.2859497-CDS-P-wetherbeei_contig1305:3818..4000Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 3819..4000 -
1683185972.2934742-CDS-P-wetherbeei_contig1305:4367..44391683185972.2934742-CDS-P-wetherbeei_contig1305:4367..4439Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 4368..4439 -
1683185972.3007588-CDS-P-wetherbeei_contig1305:4628..47031683185972.3007588-CDS-P-wetherbeei_contig1305:4628..4703Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 4629..4703 -
1683185972.307948-CDS-P-wetherbeei_contig1305:4887..49561683185972.307948-CDS-P-wetherbeei_contig1305:4887..4956Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 4888..4956 -
1683185972.315166-CDS-P-wetherbeei_contig1305:5244..53161683185972.315166-CDS-P-wetherbeei_contig1305:5244..5316Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 5245..5316 -
1683185972.322302-CDS-P-wetherbeei_contig1305:5678..57501683185972.322302-CDS-P-wetherbeei_contig1305:5678..5750Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 5679..5750 -
1683185972.3294077-CDS-P-wetherbeei_contig1305:6001..60231683185972.3294077-CDS-P-wetherbeei_contig1305:6001..6023Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 6002..6023 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.338682-UTR-P-wetherbeei_contig1305:6023..60761683185972.338682-UTR-P-wetherbeei_contig1305:6023..6076Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1305 6024..6076 -
1683185972.347448-UTR-P-wetherbeei_contig1305:6164..64771683185972.347448-UTR-P-wetherbeei_contig1305:6164..6477Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1305 6165..6477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1305.2.1

>prot_P-wetherbeei_contig1305.2.1 ID=prot_P-wetherbeei_contig1305.2.1|Name=mRNA_P-wetherbeei_contig1305.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=188bp
MSGNEAVGLLPADIGSLAHLTALNLSSNQLDGDLPTNFGRLVSLTHLDLS
KNLLSGGFSVLEDLVNIEEIHLQNNRFSGTLLARNFGRLASLRVLNLANN
KLEGSIPASLGGLAKLERLSVCGNHLTGIVPAELGLLSALKTLHLSAAHP
LVMPSDNDTTAVAEPDAVALVNSPGGTGNDSSPGDGSS
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mRNA from alignment at P-wetherbeei_contig1305:3819..6477-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1305.2.1 ID=mRNA_P-wetherbeei_contig1305.2.1|Name=mRNA_P-wetherbeei_contig1305.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2659bp|location=Sequence derived from alignment at P-wetherbeei_contig1305:3819..6477- (Phaeothamnion wetherbeei SAG_119_79)
CAGGGATCGGGTTTCCACTCGACAGTAGAGGCGGTGTGATGTTAGCCTCG
CTCTTCAAGGACTCCTCGTTGGCGATGGCTGCGCCGAGCCCAGATGCCGA
GCAGCAAGCTCTGCTAAAGATGGGGAAAGGCGGCCTCCATCTCGTCGATG
GATTCTTCGCTCGAAAGCTCGGATGGTCGAAAAAGACGCCGGTTTCCTTA
TGGAAAAACCTCTATGTGGACAGCGGCCACGCTGTGAAGCTCGAGCTGTA
TCGGATGGGTTACTCAGGTTAAGCGCAGCGTAGTGGAAGATGGTGACATC
TTTCTCCCCTAATGCAGGCTTTCGCTATCTCTTGCGGTTCTCACTACCAC
CATTTCCTTTGTTTCTTCACTTCAAATCTGCTCGCAAATTCGCGTGACCA
GGGTCTGTTCCTGGCGCAGAACTCTCGAAGCTCACGCATTTGAAGCACCT
CGACATGTCCGGGAACGAAGCCGTCGGTACGAAAAAAGGCTCTATGATTC
TATTTCTCCAGGAATTAGTGGCGTGGTTTCCCTGTGATAGGATGGATCAC
GGTGCCGTGACTCCTAAACGAAATCACCGTGAAGCGCCAGCCCCGTCCCT
CGAAGCACGTGGTATCTGGGAGGTGGCCGAAAATGGCCTCACTCTGACAC
CCCACCGCGGCACTCTTCCTTTTCGGCACTTGTGTCTCTCTGGGCTGCCG
CCCTTGCGACGTGGACGGATGCAACAGGCTTGCTACCCGCAGATATCGGA
AGTCTCGCGCATCTCACAGCGTTGAATCTGAGCAGCAACCAGCTCGATGG
TGCGTTCAATACTTGCGGCGGTTTCGCGCTTCAGCCATCGCTGTGCTGTT
CCCTATTTATCCGTGAAATTGTGCGCGGAATTGCCATCTGCATGCCATGC
TCACTGTGTTCTCGCTTTTGCGGCTTGGCGACCGGAATGTGGTGCTCTTC
CTTTGTTCGTGCTGCATTATGGCTTCCTGCATATATCGTTGCTGCTCTGC
CTCTGAAACATTCTCACACACCCGCTCGAAATACTACCGTGCTCGCATTG
CCTCCTTTCATCCCCCATTTCACATTCCTCTAGGAAATTTCCTTTGCGTC
CGGTGGCTTTGACGGCTGGTTGTATCTCCTTCCCAAACCACGATTGTGTT
GCCGGCTGCAGGAGACCTTCCGACAAATTTTGGGCGACTTGTCAGTCTCA
CACATCTCGATCTGAGCAAGAATCTGCTCTCCGGTGAGTCTAACGCCTCC
CTTTCTTGTGATCCATCCACACAGAGCGTAGTGGGTGCCGCCAATCGCTG
TTCAGGGCACCGCAGTGTCTACTGTGGCAGAGATACTGCCAGCAGGAAGA
AGGGCGGCGTTAGCAACGGTGGTATAGAGGCGGAACAAAACTGAGGAGAG
CATGCAACAATGGAAAGTTTTCCATGCCTCGATCGACTAACTGACTTGCG
CATTCTTTAAATCACTACACCCCCCGTTGGTCTTATGCTTCCGACGGCGG
TTGCTGAGCTCAAATGGACAGGGGGCTTCTCCGTGCTGGAGGACCTGGTC
AATATTGAGGAAATACACCTTCAGAACAACCGTTTTTCGGGTAAGGATTG
AGTCCAGTTGGCGCATTGTGTTAAAAGAGAGTTTGCTTCCGTCGGCGGAT
ACGATACAGTTTCCGCGCAGCCCGCACGCAACCTCAGTTGTTTGTACACC
AAAATGGCGGATTTGCCAGAATTTGTTCGTCTTGCAAATCATGCTTCTTT
ATCGTTTCGCCCCACTGTATTCAGGGACACTGCTGGCCAGAAACTTCGGG
CGGCTCGCCAGCCTCCGGGTGCTCAACCTGGCAAACAACAAGCTGGAAGG
TGGGGAAAGATCCGTCATGGTGTATGCTTTCTCTCCATTCTTCCCAACCT
GGAGACTTACATAGGTATTCGACCGCTTCGCAGAATGAAAATTTGCCTCG
ATTGTGTGACGTCTTTTATGCGTTCTTCTTAATCCGGACCTCTTTCAAAA
CCCCCAACACATGCAAGCGGCGATGTGTGCAAACGCAGGAAGCATCCCTG
CGAGCCTGGGAGGCCTCGCCAAGCTGGAACGCCTCTCCGTCTGCGGCAAC
CATTTGACAGGTATTATATACAGCAAGATCGAAGCGAAAGCCGTGACTTC
ATGAGAAAAAAATCCATTCAGCAGTAACTGCTCCAAATGGGTAAAGGGAA
CTGCGGGCGAAGGAGAGTTGTCGTTGGGCTTATAAGGCTGGGCCGATCTG
ATCACTTTACAGCATCCTGCATGAAACTGGACTAGAGATGCACATTTCAA
ATGGTTTGTGGACCGATCCGGTTCTCCGCGAGTACATGACTTCAAACCCT
TCTCCCTGTTGAACCTGATCTGTGTTATCCACTCCGCCTGGCCGCCCTTT
CCGATCGATTCCCTGTTGCTTTGCGCGGTTTCCTTTGCCTGCTTGCTCTA
AGCAAACCCAATTTAACCTGCCCGCAGGCATCGTGCCTGCCGAGCTCGGT
CTGTTGAGCGCCCTCAAGACACTGCACCTCAGCGCTGCCCATCCGCTGGT
AATGCCGTCTGACAATGATACTACCGCGGTGGCAGAGCCGGATGCCGTGG
CGCTCGTAAATTCGCCCGGCGGCACTGGCAACGACAGTAGCCCTGGCGAC
GGCAGCAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1305:3819..6477-

>mRNA_P-wetherbeei_contig1305.2.1 ID=mRNA_P-wetherbeei_contig1305.2.1|Name=mRNA_P-wetherbeei_contig1305.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=564bp|location=Sequence derived from alignment at P-wetherbeei_contig1305:3819..6477- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGGGAACGAAGCCGTCGGCTTGCTACCCGCAGATATCGGAAGTCT
CGCGCATCTCACAGCGTTGAATCTGAGCAGCAACCAGCTCGATGGAGACC
TTCCGACAAATTTTGGGCGACTTGTCAGTCTCACACATCTCGATCTGAGC
AAGAATCTGCTCTCCGGGGGCTTCTCCGTGCTGGAGGACCTGGTCAATAT
TGAGGAAATACACCTTCAGAACAACCGTTTTTCGGGGACACTGCTGGCCA
GAAACTTCGGGCGGCTCGCCAGCCTCCGGGTGCTCAACCTGGCAAACAAC
AAGCTGGAAGGAAGCATCCCTGCGAGCCTGGGAGGCCTCGCCAAGCTGGA
ACGCCTCTCCGTCTGCGGCAACCATTTGACAGGCATCGTGCCTGCCGAGC
TCGGTCTGTTGAGCGCCCTCAAGACACTGCACCTCAGCGCTGCCCATCCG
CTGGTAATGCCGTCTGACAATGATACTACCGCGGTGGCAGAGCCGGATGC
CGTGGCGCTCGTAAATTCGCCCGGCGGCACTGGCAACGACAGTAGCCCTG
GCGACGGCAGCAGC
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