mRNA_P-wetherbeei_contig1305.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1305.1.1
Unique NamemRNA_P-wetherbeei_contig1305.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1305.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1305contigP-wetherbeei_contig1305:1521..3593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size653
Hectar predicted targeting categoryother localisation
Exons7
Cds size651
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1305.1.1prot_P-wetherbeei_contig1305.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1305 1523..3593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185972.2035956-CDS-P-wetherbeei_contig1305:1522..17731683185972.2035956-CDS-P-wetherbeei_contig1305:1522..1773Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 1523..1773 -
1683185972.2134082-CDS-P-wetherbeei_contig1305:1953..20251683185972.2134082-CDS-P-wetherbeei_contig1305:1953..2025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 1954..2025 -
1683185972.2219834-CDS-P-wetherbeei_contig1305:2318..23901683185972.2219834-CDS-P-wetherbeei_contig1305:2318..2390Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 2319..2390 -
1683185972.2305157-CDS-P-wetherbeei_contig1305:2634..27061683185972.2305157-CDS-P-wetherbeei_contig1305:2634..2706Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 2635..2706 -
1683185972.23897-CDS-P-wetherbeei_contig1305:2958..30301683185972.23897-CDS-P-wetherbeei_contig1305:2958..3030Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 2959..3030 -
1683185972.2477422-CDS-P-wetherbeei_contig1305:3239..33111683185972.2477422-CDS-P-wetherbeei_contig1305:3239..3311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 3240..3311 -
1683185972.2576754-CDS-P-wetherbeei_contig1305:3553..35931683185972.2576754-CDS-P-wetherbeei_contig1305:3553..3593Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1305 3554..3593 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1305.1.1

>prot_P-wetherbeei_contig1305.1.1 ID=prot_P-wetherbeei_contig1305.1.1|Name=mRNA_P-wetherbeei_contig1305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=217bp
GWSRVTHVGNCFTGIISSELGQLVSLTELYIENSKFRGGIPAELGSLRNL
TGLHLRNNELRGTLPVEISQLAALSVLDVSHNQVSGCIPADYGKLASLTV
LLIQDNKLTGEIPYSFDRLDHLTLFKCNDNEFTDAPAKLKGRKAVEKWQR
TLAGRRQQGDAEERRRTTTAAAAAAVQRRAAEDAERDGRGAGGSAFFRTL
AAFPDDGHPAALLDRLC
back to top

mRNA from alignment at P-wetherbeei_contig1305:1521..3593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1305.1.1 ID=mRNA_P-wetherbeei_contig1305.1.1|Name=mRNA_P-wetherbeei_contig1305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2073bp|location=Sequence derived from alignment at P-wetherbeei_contig1305:1521..3593- (Phaeothamnion wetherbeei SAG_119_79)
GGGTGGTCTCGGGTGACTCATGTCGGAAACTGCTTCACCGGTGAGCGCAC
GATTGAAGTACGGCAGAGAACGGGAAAGGGGTTGTCCTCATTTACGCTGA
TGGGACGCCGTTGGTTAAAACGACATTAATCGAGGCAATTATGCGGGCAG
CACAGAATTTTTATGGGGTTCTAAGCTCTATTTAAGTTTGCGGACGCCGT
TGTTGTGACGGCTTGCATCTTCTCAGAGACGCCTTGATCCAATGTGACCC
CCGCCACCGGTCCCTTTGCAATCCCTTTTCAGGTATCATTTCTTCGGAGC
TCGGGCAGCTCGTGAGTCTGACAGAGCTCTACATCGAAAACAGCAAGTTC
AGAGGTGGGTTGTGCCCTTGTCCAAGCAGAAGGCGTGGTATCGTTGGAAT
GAGGCGCGTTCGATTCCAGAAGGGCACTTGACGTGGCGGCTATCCCCATT
CGGAAGTTATGTCGTCCTGGCCGATACTATGCTCGACCAGCTTTGACCGT
GCTGCTTACTCTTTCATTTTCCTTCATCGACCAACCGGCTGACCTTGTGT
GCAATCATCGCAGGCGGGATACCCGCGGAGTTGGGATCGCTGAGGAACTT
GACGGGCCTGCACCTCCGAAACAACGAACTTCGAGGCACGTTAAATTCAA
GAAAGCGTGCGTGTTTTGGACAAACACCGGACTGCCTTCAATGCTTTCAA
AACTTCGCATGAAACCGATTTTGTGCCTCGCGAGACACGCTGAACTTCGC
TTCCCTAGGTGGCTTGGTTCCAGCCCGTGTCTCTCTAAGACTTCTAAAGA
GAGGCATGGCCAAGTGTAATCCTGAAGGCCCTTCCTCGTCAAGTTTCCCT
TCCAATTTCCCTCCTATCTTTCTTCTTTCTCGTGCAGGCACTCTTCCTGT
AGAGATCTCTCAATTGGCCGCCCTCTCCGTTCTCGACGTTTCGCACAACC
AAGTATCGGGTAGGGACGAAAAATCTTCGCCACAACTTTCTGATAAGGCT
TGTGGCACAGCTTTATATATGAAAGCCGTTGGATAGCGCCTCCCTGCGTT
TCGCTTCCGGCTCTTTTTGGTGCCCGTCTCATTGATAGTTGGAATTCCAG
CCGTTGGGATTTTTTGCGGAATCAAATAAGGGCAATGGTCAAAGAAAGGT
ATCTCCCACGTATTATCCCCCCTTTTCTTGTTCCCCTACTGCGGCCGTGA
CAGGGTGCATTCCGGCCGACTATGGGAAGCTCGCCAGTCTCACGGTTTTG
CTGATCCAGGACAACAAGCTAACAGGTGCGAAGAGTAGTCATGAACTACG
CTATGTATCGCAGAACTAGGCAGAGTGCTCCTTGCGATGTCGAGGGGACA
GTATGGAATTTAGCAGGAGGAAGGCCGAGAGATAGGGAAAGGGACGGGTG
GTCTTTCTCCTTTGTTGAATCGTCATGGTTACGGCAACACTGGTCTCTGA
TCCCAAGGCTACCGTTTCTTTTGGCTCCTTCAGTTCTCTGTTCATTTCGC
TCCCAGTTCGAAAGGTGGTCGTATTTTCCTATCGTGCTTTCACCCGGTTT
CCGCTAACAACGACGCAGGCGAAATCCCATACAGCTTTGACCGACTGGAC
CACCTGACACTCTTCAAGTGCAACGACAATGAATTCACAGGCGAGCCGCG
GTGTCCCACAGATGAATCAAGTAAAAGCATTGTGGAGACGCTCTGGTGCT
TGTTTGCGTTCTTTGGACATGTATTCCTTCGTCCTATAGCTCGCTTCTCT
TCACTCCCCAGTTTTTACTTGCGCCACCTTTGCACTTCTACCGACCCGGG
AAAACCCTGCGCTGCTGCAGACGCTCCGGCCAAGCTGAAGGGCCGCAAGG
CGGTCGAGAAGTGGCAGCGAACGCTTGCCGGCCGACGGCAGCAGGGTGAC
GCCGAGGAACGCCGCCGGACCACTACTGCCGCCGCCGCCGCCGCCGTCCA
GCGGCGGGCCGCCGAGGACGCTGAGCGGGACGGCCGAGGCGCCGGCGGGT
CGGCGTTCTTCCGGACGTTGGCAGCCTTTCCGGACGACGGACACCCAGCG
GCGCTCCTGGACCGTCTCTGCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1305:1521..3593-

>mRNA_P-wetherbeei_contig1305.1.1 ID=mRNA_P-wetherbeei_contig1305.1.1|Name=mRNA_P-wetherbeei_contig1305.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=651bp|location=Sequence derived from alignment at P-wetherbeei_contig1305:1521..3593- (Phaeothamnion wetherbeei SAG_119_79)
GGGTGGTCTCGGGTGACTCATGTCGGAAACTGCTTCACCGGTATCATTTC
TTCGGAGCTCGGGCAGCTCGTGAGTCTGACAGAGCTCTACATCGAAAACA
GCAAGTTCAGAGGCGGGATACCCGCGGAGTTGGGATCGCTGAGGAACTTG
ACGGGCCTGCACCTCCGAAACAACGAACTTCGAGGCACTCTTCCTGTAGA
GATCTCTCAATTGGCCGCCCTCTCCGTTCTCGACGTTTCGCACAACCAAG
TATCGGGGTGCATTCCGGCCGACTATGGGAAGCTCGCCAGTCTCACGGTT
TTGCTGATCCAGGACAACAAGCTAACAGGCGAAATCCCATACAGCTTTGA
CCGACTGGACCACCTGACACTCTTCAAGTGCAACGACAATGAATTCACAG
ACGCTCCGGCCAAGCTGAAGGGCCGCAAGGCGGTCGAGAAGTGGCAGCGA
ACGCTTGCCGGCCGACGGCAGCAGGGTGACGCCGAGGAACGCCGCCGGAC
CACTACTGCCGCCGCCGCCGCCGCCGTCCAGCGGCGGGCCGCCGAGGACG
CTGAGCGGGACGGCCGAGGCGCCGGCGGGTCGGCGTTCTTCCGGACGTTG
GCAGCCTTTCCGGACGACGGACACCCAGCGGCGCTCCTGGACCGTCTCTG
C
back to top