mRNA_P-wetherbeei_contig13024.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13024.2.1
Unique NamemRNA_P-wetherbeei_contig13024.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: A0A0F8XWY1_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8XWY1_9ZZZZ)

HSP 1 Score: 80.9 bits (198), Expect = 3.610e-18
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   16 LGGARRDRTDDLMLAKHALSQLSYGPGRREITRLELVGLGRLELPTSRLSSARSNQLSYKPN 201
            LGGA+RDRT DL+ A+ ALSQLSYGP +   T  +LVGLGR ELPTS LS  RSNQLSY+PN
Sbjct:   17 LGGAKRDRTADLLRARQALSQLSYGPDKT-FTPRQLVGLGRFELPTSPLSGVRSNQLSYRPN 77          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: A0A0F8WUX4_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F8WUX4_9ZZZZ)

HSP 1 Score: 78.6 bits (192), Expect = 9.690e-18
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   13 RLGGARRDRTDDLMLAKHALSQLSYGPGRREITRLELVGLGRLELPTSRLSSARSNQLSYKPN 201
            R GGA+RDRT DL+ A+ ALSQLSYGP +    R +LVGLGR ELPTS LS  RSNQLSY+PN
Sbjct:    9 RPGGAKRDRTADLLRARQALSQLSYGPFQTGTPR-QLVGLGRFELPTSPLSGVRSNQLSYRPN 70          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: A0A8J4V8U4_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4V8U4_9ROSI)

HSP 1 Score: 81.6 bits (200), Expect = 3.560e-17
Identity = 45/63 (71.43%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   19 GGARRDRTDDLMLAKHALSQLSYGP---GRREITRLELVGLGRLELPTSRLSSARSNQLSYKP 198
            GGARRDRTDDLMLAKHALSQLSYGP      + T   +VGLGRLE PTS LS  RSN LSY+P
Sbjct:  176 GGARRDRTDDLMLAKHALSQLSYGPKGSAPADRTSRVVVGLGRLERPTSPLSGVRSNHLSYRP 238          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: R6I1J2_9PROT (Uncharacterized protein n=1 Tax=Azospirillum sp. CAG:260 TaxID=1262706 RepID=R6I1J2_9PROT)

HSP 1 Score: 72.8 bits (177), Expect = 1.920e-15
Identity = 40/66 (60.61%), Postives = 45/66 (68.18%), Query Frame = 1
Query:    1 HPNERLGGARRDRTDDLMLAKHALSQLSYGPGRREITRLELVGLGRLELPTSRLSSARSNQLSYKP 198
            +P   LGG + DRT D +LAK  LSQLSY P +       +VGLGRLELPTSRLS  RSN LSYKP
Sbjct:    5 YPLRLLGGGKEDRTPDPLLAKQVLSQLSYTPDK-------VVGLGRLELPTSRLSGVRSNHLSYKP 63          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: A0A654CX76_9HYPH (Uncharacterized protein n=1 Tax=Bosea sp. 62 TaxID=2653182 RepID=A0A654CX76_9HYPH)

HSP 1 Score: 74.3 bits (181), Expect = 2.450e-15
Identity = 50/77 (64.94%), Postives = 51/77 (66.23%), Query Frame = 1
Query:   19 GGARRDRTDDLMLAKHALSQLSYGP-------------GRR-EITRLE---LVGLGRLELPTSRLSSARSNQLSYKP 198
            GGARRDRTDDL LAK  LSQLSYGP             GR  E  RLE   LVGLG  E PTSRLSSARSNQLSY+P
Sbjct:   44 GGARRDRTDDLKLAKLPLSQLSYGPMFLKGHAPLGAAAGRPCEPCRLEDHSLVGLGGFEPPTSRLSSARSNQLSYRP 120          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: A0A8J4VFY4_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4VFY4_9ROSI)

HSP 1 Score: 75.1 bits (183), Expect = 8.780e-15
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 3
Query:   12 KAWWSQTGSNRRPHACKARALPTELWPRPARDYALGTGGPGKT*TSDLTLIKRAL 176
            K WW QTGSNRRPHACKARALP EL PR     A   GGPG T TSDLTLI+ AL
Sbjct:  195 KKWWRQTGSNRRPHACKARALPAELCPR---SRASQIGGPGTTRTSDLTLIRGAL 246          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: A0A653PL13_9PSED (Uncharacterized protein n=1 Tax=Pseudomonas sp. 8O TaxID=2653165 RepID=A0A653PL13_9PSED)

HSP 1 Score: 72.4 bits (176), Expect = 1.180e-14
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   19 GGARRDRTDDLMLAKHALSQLSYGPGRREITRLELVGLGRLELPTSRLSSARSNQLSYKP 198
            GGA+RDRT DL+ A+ ALSQLSYGP        +LVGLGR ELPTS LS  RSNQLSY+P
Sbjct:   55 GGAKRDRTADLLRARQALSQLSYGPVF--FCTKQLVGLGRFELPTSPLSGVRSNQLSYRP 112          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: A0A8H8Z0I0_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonas nitrosa TaxID=52442 RepID=A0A8H8Z0I0_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 5.490e-13
Identity = 38/61 (62.30%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   16 LGGARRDRTDDLMLAKHALSQLSYGPGRREITRLELVGLGRLELPTSRLSSARSNQLSYKP 198
            +GG  RDRTDD +LAK  LSQLSY P         LVGLG LE PT RLSS  SNQLSY+P
Sbjct:    2 IGGGERDRTDDPLLAKQVLSQLSYTP--------YLVGLGGLEPPTPRLSSVCSNQLSYRP 54          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: A0A3M4T8A2_PSESG (Uncharacterized protein n=5 Tax=Pseudomonas syringae group TaxID=136849 RepID=A0A3M4T8A2_PSESG)

HSP 1 Score: 66.6 bits (161), Expect = 7.440e-13
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   19 GGARRDRTDDLMLAKHALSQLSYGP---GRREITRL------ELVGLGRLELPTSRLSSARSNQLSYKP 198
            GGA+RDRT DL+ A+ ALSQLSYGP      E + L      +LVGLGR ELPTS LS   SNQLSY+P
Sbjct:   15 GGAKRDRTADLLRARQALSQLSYGPVFLHTVEASTLTSYLTSKLVGLGRFELPTSPLSGVCSNQLSYRP 83          
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Match: E7C5I0_9PROT (Uncharacterized protein n=1 Tax=uncultured Rhodospirillales bacterium HF0500_23A22 TaxID=723611 RepID=E7C5I0_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 1.110e-12
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   19 GGARRDRTDDLMLAKHALSQLSYGPGRREITRLELVGLGRLELPTSRLSSARSNQLSYKP 198
            GG  RDRTDDL+LAK ALSQLSY P         +VGL R+EL TS LS  RSNQLSY+P
Sbjct:   33 GGGERDRTDDLLLAKQALSQLSYTP--------IMVGLRRVELLTSPLSGVRSNQLSYRP 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13024.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F8XWY1_9ZZZZ3.610e-1869.35Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A0F8WUX4_9ZZZZ9.690e-1868.25Uncharacterized protein n=1 Tax=marine sediment me... [more]
A0A8J4V8U4_9ROSI3.560e-1771.43Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
R6I1J2_9PROT1.920e-1560.61Uncharacterized protein n=1 Tax=Azospirillum sp. C... [more]
A0A654CX76_9HYPH2.450e-1564.94Uncharacterized protein n=1 Tax=Bosea sp. 62 TaxID... [more]
A0A8J4VFY4_9ROSI8.780e-1570.91Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
A0A653PL13_9PSED1.180e-1466.67Uncharacterized protein n=1 Tax=Pseudomonas sp. 8O... [more]
A0A8H8Z0I0_9PROT5.490e-1362.30Uncharacterized protein n=1 Tax=Nitrosomonas nitro... [more]
A0A3M4T8A2_PSESG7.440e-1359.42Uncharacterized protein n=5 Tax=Pseudomonas syring... [more]
E7C5I0_9PROT1.110e-1263.33Uncharacterized protein n=1 Tax=uncultured Rhodosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13024contigP-wetherbeei_contig13024:1522..1728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1247024.JRLH01000016_gene1680
Model size207
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.48e-13
EggNOG OGs2EMPC@1|root,33FBT@2|Bacteria,1QNQV@1224|Proteobacteria,1SI44@1236|Gammaproteobacteria
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185971.4856021-CDS-P-wetherbeei_contig13024:1521..17281683185971.4856021-CDS-P-wetherbeei_contig13024:1521..1728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13024 1522..1728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13024.2.1prot_P-wetherbeei_contig13024.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13024 1522..1728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13024.2.1

>prot_P-wetherbeei_contig13024.2.1 ID=prot_P-wetherbeei_contig13024.2.1|Name=mRNA_P-wetherbeei_contig13024.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=69bp
HPNERLGGARRDRTDDLMLAKHALSQLSYGPGRREITRLELVGLGRLELP
TSRLSSARSNQLSYKPNDR
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mRNA from alignment at P-wetherbeei_contig13024:1522..1728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13024.2.1 ID=mRNA_P-wetherbeei_contig13024.2.1|Name=mRNA_P-wetherbeei_contig13024.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig13024:1522..1728+ (Phaeothamnion wetherbeei SAG_119_79)
CACCCAAACGAAAGGCTTGGTGGAGCCAGACGGGATCGAACCGACGACCT CATGCTTGCAAAGCACGCGCTCTCCCAACTGAGCTATGGCCCCGGCCGGC GAGAGATTACGCGCTTGGAACTGGTGGGCCTGGGAAGACTTGAACTTCCG ACCTCACGCTTATCAAGCGCGCGCTCTAACCAACTGAGCTACAAGCCCAA CGACCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13024:1522..1728+

>mRNA_P-wetherbeei_contig13024.2.1 ID=mRNA_P-wetherbeei_contig13024.2.1|Name=mRNA_P-wetherbeei_contig13024.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig13024:1522..1728+ (Phaeothamnion wetherbeei SAG_119_79)
CACCCAAACGAAAGGCTTGGTGGAGCCAGACGGGATCGAACCGACGACCT
CATGCTTGCAAAGCACGCGCTCTCCCAACTGAGCTATGGCCCCGGCCGGC
GAGAGATTACGCGCTTGGAACTGGTGGGCCTGGGAAGACTTGAACTTCCG
ACCTCACGCTTATCAAGCGCGCGCTCTAACCAACTGAGCTACAAGCCCAA
CGACCGG
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