mRNA_P-wetherbeei_contig13023.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13023.2.1
Unique NamemRNA_P-wetherbeei_contig13023.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13023.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13023contigP-wetherbeei_contig13023:1579..1900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185971.4396904-CDS-P-wetherbeei_contig13023:1578..16671683185971.4396904-CDS-P-wetherbeei_contig13023:1578..1667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13023 1579..1667 -
1683185971.4486618-CDS-P-wetherbeei_contig13023:1833..19001683185971.4486618-CDS-P-wetherbeei_contig13023:1833..1900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13023 1834..1900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13023.2.1prot_P-wetherbeei_contig13023.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13023 1579..1900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13023.2.1

>prot_P-wetherbeei_contig13023.2.1 ID=prot_P-wetherbeei_contig13023.2.1|Name=mRNA_P-wetherbeei_contig13023.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
PSCNKSRPAKTDISKSFHMKDFEFRTHGHQPTRNVGTTHDPSAKAATASV
I*
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mRNA from alignment at P-wetherbeei_contig13023:1579..1900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13023.2.1 ID=mRNA_P-wetherbeei_contig13023.2.1|Name=mRNA_P-wetherbeei_contig13023.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=322bp|location=Sequence derived from alignment at P-wetherbeei_contig13023:1579..1900- (Phaeothamnion wetherbeei SAG_119_79)
CCATCATGCAACAAGTCAAGACCGGCGAAGACCGACATCAGCAAGTCGTT
CCACATGAAAGATTTCGGTCAGTTGAAATTCCTGCTTGGCATGGAAGCAC
AGCGTGACAGATTCCGTCGTCAAATTGAGATAAGCCAGCGGAAATATTTA
CGAGAAATCCTAGAGCGTTTCCGAAACGGGCTAAACATCGGGTCATTTCT
AATCGTCAGGGACAATTCGCAACACCTGCGCAGAATTTCGAACACACGGG
CATCAGCCGACGCGGAACGTCGGCACCACGCATGATCCGTCAGCAAAGGC
AGCAACAGCATCTGTGATATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13023:1579..1900-

>mRNA_P-wetherbeei_contig13023.2.1 ID=mRNA_P-wetherbeei_contig13023.2.1|Name=mRNA_P-wetherbeei_contig13023.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig13023:1579..1900- (Phaeothamnion wetherbeei SAG_119_79)
CCATCATGCAACAAGTCAAGACCGGCGAAGACCGACATCAGCAAGTCGTT
CCACATGAAAGATTTCGAATTTCGAACACACGGGCATCAGCCGACGCGGA
ACGTCGGCACCACGCATGATCCGTCAGCAAAGGCAGCAACAGCATCTGTG
ATATGA
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