mRNA_P-wetherbeei_contig13014.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13014.1.1
Unique NamemRNA_P-wetherbeei_contig13014.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig13014.1.1 vs. uniprot
Match: Q8QKV6_ESV1K (EsV-1-67 n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K)

HSP 1 Score: 101 bits (252), Expect = 2.220e-25
Identity = 51/122 (41.80%), Postives = 79/122 (64.75%), Query Frame = 1 
Query:    1 MERMTPTSVTQYYALSAIVLSIMIGTSLLSVHRHQTERLPRKYVLKFIDMLRSAARSSISSAQNNHPVQMFLDATEAQIKTDIAYAFLTDSQCRCMLGIDIAEMKMFVDGQHEKALEGMLIA 366
            M+RM   S   Y+ LS IV+  +  TS LSV  H++ +LPR+++LK+ ++LR AAR+SI S Q+ HPVQ F+D+++A    +I   FLT  Q + ++ +DI EMK F+  QH+ A   ++ A
Sbjct:    1 MDRMNQRSAMAYWKLSTIVVVFVGVTSYLSVRAHESSKLPREHILKYSELLREAARASIQSTQDQHPVQSFIDSSKAMCAVNIVSEFLTPHQVKHIMNVDIGEMKEFISKQHDDATSALVQA 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13014.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKV6_ESV1K2.220e-2541.80EsV-1-67 n=2 Tax=root TaxID=1 RepID=Q8QKV6_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13014contigP-wetherbeei_contig13014:478..843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size366
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-67
Ec32 orthologEc-06_006130.1
Cds size366
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.9000492-CDS-P-wetherbeei_contig13014:477..8431683185970.9000492-CDS-P-wetherbeei_contig13014:477..843Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13014 478..843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13014.1.1prot_P-wetherbeei_contig13014.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13014 478..843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13014.1.1

>prot_P-wetherbeei_contig13014.1.1 ID=prot_P-wetherbeei_contig13014.1.1|Name=mRNA_P-wetherbeei_contig13014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MERMTPTSVTQYYALSAIVLSIMIGTSLLSVHRHQTERLPRKYVLKFIDM
LRSAARSSISSAQNNHPVQMFLDATEAQIKTDIAYAFLTDSQCRCMLGID
IAEMKMFVDGQHEKALEGMLIA
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mRNA from alignment at P-wetherbeei_contig13014:478..843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13014.1.1 ID=mRNA_P-wetherbeei_contig13014.1.1|Name=mRNA_P-wetherbeei_contig13014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig13014:478..843- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACGTATGACACCGACGAGCGTGACTCAATACTATGCATTGTCTGC
CATTGTCTTGTCTATCATGATTGGAACGTCGTTGCTTTCCGTGCACCGTC
ATCAGACGGAACGTCTTCCGCGGAAATATGTTCTCAAGTTCATTGACATG
CTGCGCAGTGCTGCACGGAGTTCGATCAGCTCTGCTCAAAACAACCACCC
CGTGCAAATGTTCCTAGACGCAACGGAGGCGCAGATCAAAACAGACATTG
CATACGCATTCCTGACGGACTCGCAGTGCAGATGTATGCTGGGAATTGAC
ATTGCAGAAATGAAAATGTTTGTGGACGGGCAGCACGAAAAGGCGTTGGA
AGGAATGCTGATTGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig13014:478..843-

>mRNA_P-wetherbeei_contig13014.1.1 ID=mRNA_P-wetherbeei_contig13014.1.1|Name=mRNA_P-wetherbeei_contig13014.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig13014:478..843- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAACGTATGACACCGACGAGCGTGACTCAATACTATGCATTGTCTGC
CATTGTCTTGTCTATCATGATTGGAACGTCGTTGCTTTCCGTGCACCGTC
ATCAGACGGAACGTCTTCCGCGGAAATATGTTCTCAAGTTCATTGACATG
CTGCGCAGTGCTGCACGGAGTTCGATCAGCTCTGCTCAAAACAACCACCC
CGTGCAAATGTTCCTAGACGCAACGGAGGCGCAGATCAAAACAGACATTG
CATACGCATTCCTGACGGACTCGCAGTGCAGATGTATGCTGGGAATTGAC
ATTGCAGAAATGAAAATGTTTGTGGACGGGCAGCACGAAAAGGCGTTGGA
AGGAATGCTGATTGCG
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