mRNA_P-wetherbeei_contig13010.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: A0A482S4A1_9ARCH (DNA_LIGASE_A3 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S4A1_9ARCH) HSP 1 Score: 96.7 bits (239), Expect = 3.450e-20 Identity = 73/213 (34.27%), Postives = 110/213 (51.64%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWI--LKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRR-----------LFFILFDVV-REGVAKIIADAVAEADTKLGIKLGTVTPPRGGTMTELPLAVRRSVLKALITEEPHRLEIIHHRVVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRK---WKE---WVKMKPE 579 R NDY++ Y P I + I+DGE+ A + + ++ FG N +VAR + A+ + + F+ FD+V +G + AV + GI V G +T LPL VRR +L++L+ HR+E++ H+ + S + E RR+ L E+F+ + +EGLVVKSL+SPY LG+ SR KE W KMKPE Sbjct: 36 RRGNDYTENYWPVAHDVINSFRKHTKSAFIVDGEICALEGQAKTILPFGSNMSVARLEREYGANKQDQLGWHTDLPNWMCFVAFDLVFLQG--EDAQPAVDRVMGECGIDTAHVPSNVHGEITHLPLIVRRRLLESLMEVREHRVEMVKHKYITSDNVEARRKELAEHFEKVVIDGQEGLVVKSLSSPYILGETSRSASTCKEGVVWCKMKPE 246
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: A0A836CLE3_9STRA (DNA ligase IV n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLE3_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 6.390e-18 Identity = 79/213 (37.09%), Postives = 102/213 (47.89%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAR-EFLDDPASSRR-----LFFILFDVVREGV-----------AKIIADAVAEADTKLGIKLGTVTPPRGGTMTE------------LPLAVRRSVLKALITEEPHRL---EIIHHRVVASRDPEERRRALVEYFDT-AIESREEGLVVKSLASPYRLGDK 540 R DY+DKYGP +T +IL V A RCILDGE+ +WD D + +V FG NRT AR E L + + + L + +FD+V G A + +A AEA + G+ G PPRG + P A R L L R I VV +RD AL E+F+ AI EEGLVVK L +PY LG+K Sbjct: 348 RRGTDYTDKYGPVMTPFILSQVTAHRCILDGEMMSWDADMKRMVAFGCNRTSARLEALANGSGAAAGVRQWLCYSIFDIVYLGAEQGADAAASPEAAALHEAAAEAAREDGV--GAPPPPRGALLPSPAKAGSAAAGAVTPAAARLGDLTELPLAVRRRALTRVIGQGEVVRARDGAAAA-ALEEFFELHAIARGEEGLVVKDLTAPYLLGEK 557
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: A0A8K0HH87_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0HH87_9ROSA) HSP 1 Score: 87.8 bits (216), Expect = 1.010e-16 Identity = 64/209 (30.62%), Postives = 100/209 (47.85%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRRLFFILFDVVREGVAKIIADAVAEADTKLGIKLGTVTPPRGGTMTELPLAVRRSVLKALITEEPHRLEII--------HHR--------VVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRKWKEWVKMKPE 579 R+ D+S+ YG A+++ I++NV A+RCILDGE+ WD EFG N+ +A+ D S R+L +I FD++ G +I ++ E R +L+ ++ RLEI+ HH + + D ER +F IE+REEG+++K L S + GD+S KW +K+KPE Sbjct: 272 RNFLDHSE-YGHAMSEVIIQNVMADRCILDGEMLVWDTSLSRFAEFGSNQEIAKAARDGLDSDRQLCYIAFDILYVGDTSVIHQSLKE---------------------------RHELLRTIVKPIKGRLEILVPNCGLNTHHSFGDPCWSLIANNVDDIER------FFKETIENREEGIILKDLGSKWEPGDRSGKW---LKLKPE 443
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: A0A6J1K974_CUCMA (DNA ligase n=5 Tax=Cucurbita TaxID=3660 RepID=A0A6J1K974_CUCMA) HSP 1 Score: 86.3 bits (212), Expect = 3.460e-16 Identity = 65/193 (33.68%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRRLFFILFDVVREGVAKIIADAVAEADTKLGIKLGTVTPPRGGTMTELPLAVRRSVLKALITEEPHRLEIIHHRVVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRKWKEWVKMKPE 579 R+ D+S+ YG ++ I++NV A RCILDGE+ WD EFG N+ +AR D S+R+L ++ FDV+ G +I ++ E L V P +G +L + V L + +P I + V D ER +F + IE+R+EG+V+K L+S + GD+S KW +K+KP+ Sbjct: 272 RNFLDHSE-YGHGMSDVIVQNVLATRCILDGEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKERHELLR---DVVKPVKG----QLEILVPNGGLNSDCAGDPP-WSIRAYNV----DDVER------FFKSTIENRDEGIVIKDLSSKWEPGDRSGKW---LKLKPD 442
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: A0A6J1D8A6_MOMCH (DNA ligase n=7 Tax=Magnoliopsida TaxID=3398 RepID=A0A6J1D8A6_MOMCH) HSP 1 Score: 84.3 bits (207), Expect = 1.610e-15 Identity = 61/193 (31.61%), Postives = 97/193 (50.26%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRRLFFILFDVVREGVAKIIADAVAEADTKLGIKLGTVTPPRGGTMTELPLAVRRSVLKALITEEPHRLEIIHHRVVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRKWKEWVKMKPE 579 R+ D+S+ YG ++ I++N+ A RCILDGE+ WD EFG N+ +AR D S R+L ++ FDV+ G +I ++ E L V P +G L + V L + +P + ++ D ER +F IE+R+EG+V+K + S + GD+S KW +K+KP+ Sbjct: 272 RNFLDHSE-YGRGMSDVIVENIIATRCILDGEMLVWDKSLNRFAEFGSNQEIARAAKDGLDSDRQLCYVAFDVLYVGDTSVIHRSLKERHELLR---DVVKPVKG----RLEILVPNGGLNSDCAGDPSWSQRAYNA-----DDVER------FFKNTIENRDEGIVIKDMGSKWEPGDRSGKW---LKLKPD 442
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: A0A2S3IA35_9POAL (DNA ligase n=4 Tax=Panicum hallii TaxID=206008 RepID=A0A2S3IA35_9POAL) HSP 1 Score: 84.0 bits (206), Expect = 2.180e-15 Identity = 57/196 (29.08%), Postives = 98/196 (50.00%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRRLFFILFDVVREGVAKIIADAVAEADTKLGIKLGTVTPPRGGTMTELP---LAVRRSVLKALITEEPHRLEIIHHRVVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRKWKEWVKMKPE 579 RS D+S+ Y P +++ I +N+ +RCILDGE+ WD EFG N+ +A+ + + R+L ++ FD++ G +I ++ E I V P +G +P L VRR + + H LE + ++F I++R+EG+++K LAS + GD++ KW +K+KP+ Sbjct: 274 RSFLDHSE-YAPGMSKIIKENILVDRCILDGEMLVWDTVLNRFAEFGSNQEIAKAAREGLETDRQLCYVAFDILYAGDTSVIHQSLTERQE---ILQKVVKPLKGHLEILIPTGGLNVRRPSDEPCWSIIAHNLEDVE-----------------KFFKDTIDNRDEGIILKDLASKWEPGDRNGKW---LKLKPD 445
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: A0A2P6QSI9_ROSCH (DNA ligase n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6QSI9_ROSCH) HSP 1 Score: 83.6 bits (205), Expect = 2.960e-15 Identity = 63/199 (31.66%), Postives = 102/199 (51.26%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRRLFFILFDVVREGVAKIIADAVAEADTKLGIKLGTVTP------PRGGTMTELPLAVRRSVLKALITEEPHRLEIIHHRVVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRKWKEWVKMKPE 579 R+ D+S+ YG A++ I++NV+A+RCILDGE+ WD + EFG N+ +A+ D S ++L ++ FD++ G +I +++ L + +T P GG T RS + EP I+H + D ER +F IE+R+EG+V+K L S + D+S KW +K+KP+ Sbjct: 273 RNFLDHSE-YGHAMSDIIIQNVQADRCILDGEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDKQLCYVAFDILYVGDTSVIHESLKGRHELLQKVVKPLTGRLEILVPNGGLNTH------RS------SGEPCWSLIVH-----TLDDVER------FFKETIENRDEGIVLKDLGSKWEPSDRSGKW---LKLKPD 444
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: UPI00053C954F (DNA ligase 4 isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C954F) HSP 1 Score: 82.8 bits (203), Expect = 5.480e-15 Identity = 62/193 (32.12%), Postives = 98/193 (50.78%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRRLFFILFDVVREGVAKIIADAVAEADTKLGIKLGTVTPPRGGTMTELPLAVRRSVLKALITEEPHRLEIIHHRVVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRKWKEWVKMKPE 579 R+ D+S+ Y A++ I++N+ A++CILDGE+ WD EFG N+ +A+ + S R+L ++ FDV+ G +I ++ E L V P +G L + V L A II H A+ D E+ +F +E+R+EG+V+K L S + GD+S KW +K+KPE Sbjct: 308 RNFLDHSE-YAHAMSDLIVRNIEADKCILDGEMLVWDASLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKERHELLR---KVVKPLKG----RLEVLVPDGGLNAHRPSGEPCWSIIAH---AADDVEK-------FFKETVENRDEGIVLKDLDSKWEPGDRSGKW---LKLKPE 479
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: UPI000CD5A78A (DNA ligase 4 isoform X2 n=1 Tax=Capsella rubella TaxID=81985 RepID=UPI000CD5A78A) HSP 1 Score: 82.4 bits (202), Expect = 7.340e-15 Identity = 62/196 (31.63%), Postives = 99/196 (50.51%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRRLFFILFDVVREGVAKIIADAVAEADTKLGIKLGTVTPPRGGTMTELP---LAVRRSVLKALITEEPHRLEIIHHRVVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRKWKEWVKMKPE 579 R+ D+S+ Y A++ I++N+ A++CILDGE+ WD EFG N+ +A+ + S R+L ++ FDV+ G +I ++ E L V P +G LP L V R + EP ++H A+ D E +F +E+R+EG+V+K L + GD+S KW +K+KPE Sbjct: 141 RNFLDHSE-YAHAMSNLIVQNILADKCILDGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKERHELLR---KVVKPLKGRLEVLLPEGGLNVHRP------SGEPSWSIVVH----AAADVER-------FFKETVENRDEGVVLKDLGWKWEPGDRSGKW---LKLKPE 312
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Match: A0A251QTR0_PRUPE (DNA ligase n=11 Tax=Prunus TaxID=3754 RepID=A0A251QTR0_PRUPE) HSP 1 Score: 82.4 bits (202), Expect = 7.410e-15 Identity = 61/193 (31.61%), Postives = 96/193 (49.74%), Query Frame = 1 Query: 1 RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRTVAREFLDDPASSRRLFFILFDVVREGVAKIIADAVAEADTKLGIKLGTVTPPRGGTMTELPLAVRRSVLKALITEEPHRLEIIHHRVVASRDPEERRRALVEYFDTAIESREEGLVVKSLASPYRLGDKSRKWKEWVKMKPE 579 R+ D+ + YG A++ +++NV A+RCILDGE+ WD EFG N+ +A+ D S R+L ++ FD++ G +I ++ E L V P +G L + V L +E +I V D ER +F IE+R+EG+V+K L S + D+S KW +K+KP+ Sbjct: 272 RNFLDHPE-YGHAMSDIVIQNVLADRCILDGEMLVWDTSSNRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYVGDTSVIHQSLKERHELLQ---KVVKPLKG----RLEILVPNGGLNTHRSEGDPCWSLIARSV----DEVER------FFKETIENRDEGIVLKDLGSKWEPSDRSGKW---LKLKPD 443 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13010.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig13010.2.1 >prot_P-wetherbeei_contig13010.2.1 ID=prot_P-wetherbeei_contig13010.2.1|Name=mRNA_P-wetherbeei_contig13010.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp RSINDYSDKYGPALTQWILKNVRAERCILDGEVAAWDDDRRCLVEFGHNRback to top mRNA from alignment at P-wetherbeei_contig13010:539..1393+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig13010.2.1 ID=mRNA_P-wetherbeei_contig13010.2.1|Name=mRNA_P-wetherbeei_contig13010.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=855bp|location=Sequence derived from alignment at P-wetherbeei_contig13010:539..1393+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig13010:539..1393+ >mRNA_P-wetherbeei_contig13010.2.1 ID=mRNA_P-wetherbeei_contig13010.2.1|Name=mRNA_P-wetherbeei_contig13010.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig13010:539..1393+ (Phaeothamnion wetherbeei SAG_119_79)back to top |