mRNA_P-wetherbeei_contig1301.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1301.2.1
Unique NamemRNA_P-wetherbeei_contig1301.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1301.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1301contigP-wetherbeei_contig1301:684..2718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1718
Hectar predicted targeting categorysignal peptide
Exons2
Cds size1434
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.617347-CDS-P-wetherbeei_contig1301:683..19591683185970.617347-CDS-P-wetherbeei_contig1301:683..1959Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1301 684..1959 -
1683185970.6255462-CDS-P-wetherbeei_contig1301:2278..24361683185970.6255462-CDS-P-wetherbeei_contig1301:2278..2436Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1301 2279..2436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.634014-UTR-P-wetherbeei_contig1301:2436..27181683185970.634014-UTR-P-wetherbeei_contig1301:2436..2718Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1301 2437..2718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1301.2.1prot_P-wetherbeei_contig1301.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1301 684..2436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1301.2.1

>prot_P-wetherbeei_contig1301.2.1 ID=prot_P-wetherbeei_contig1301.2.1|Name=mRNA_P-wetherbeei_contig1301.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=478bp
MGGMADKDSRFTLILAGLLVGGASSLFSAMAMVNNIFMIPSFFIFLRLAI
LARTVVSSFARFAPNSSGSLAAGAAIGAGIIVTVGVLGVLGARLLRSYAV
ETSDAAAAGFDAGWQIFGALTYAYLAVCLVRLPELPDLLHARAIEKVRDV
ENEAAGDAGTRRSGYFHAAMTAVLRDLWTTALFLLTFGGWGRLVAVPVPA
VVGVVIGLLFGGVVAGSIAADLLDSGDVSGASVAAGGGDGGGFTRADSVA
SAYGVDVAATGPRRRKGAVSSAVTNAAVRAGGVISEREEARVISSVWEER
RVQIIGELPPERRWTVAHMASGLHLGESARSIHASLHQDSQGAMMTPPPP
PQRRSISGGSVGFNNGVGRAPVSGEHTMAAAGPPLPEDEPVSAFHGDDYD
CYGVGGGGDHGAAEEGASLETVEDILAGARARAAAAAVPTPAPPTTVAPK
PPGLLRVPSRAKLMPAPEPEAPLTPTRA
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mRNA from alignment at P-wetherbeei_contig1301:684..2718-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1301.2.1 ID=mRNA_P-wetherbeei_contig1301.2.1|Name=mRNA_P-wetherbeei_contig1301.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2035bp|location=Sequence derived from alignment at P-wetherbeei_contig1301:684..2718- (Phaeothamnion wetherbeei SAG_119_79)
GGCCTGAGAAGTAAAAGCTCATTTAAAGCAAGGAAGGAAAGCTAGCACAC
CGCACACATATCGAGCCGGGCCCGGTGGCGGGGGCTCAGGAGTCGTCTAC
GCTCAAGCCCAAAGAAAACCGGTTTTCTACCCTTGTTCTTCCTTATAGCC
AGGCGCGCGAGCCCTATAAGAGCGCTCACAAAGGACCCCAATAGATCACT
CACCGGAGTTGTTCTCCGCGAACCGAAGCCGAGCGCAAACGCTCTTATAA
AGGAAACTCCTTCTAGACGCGAGCGTAGGAAAATGGGAGGCATGGCAGAT
AAAGACTCGAGGTTTACCCTCATCCTCGCGGGCCTCCTCGTCGGCGGCGC
GTCGAGTCTCTTTAGCGCCATGGCAATGGTAAACAACATCTTTATGATTC
CTTCGTTCTTCATCTTCCTGCGATTGGCCATCCTGGCGAGGTGAGGTTAC
AACGTTTTGTACATTCCGGATTTAGATAAAGAGTTATTCGAAACCTGACT
GTTTTTTGAGCCAGTCGTAGAATACGCCCGAAGGATCAATTACCCCAATT
TATCAGCATTCGTCTTAATCATTGTGATATGGAAACTTGAAAGATGTGTG
CCGTAGGGTCTTCCTTCTAATGTGCCCTTCGAGGCATCGATTCACTTTTC
CCTCTTTCAATTTCTGCATGTTCATCCCACTAGCAGTGACCAGTCACTTG
CACTGCGACGAGACTTCAAGCCTCTGCCCCTTTCCATGTGCCTCCCTTAT
ATAAAACAGGACCGTCGTCTCGTCCTTCGCCCGCTTCGCGCCCAACTCGT
CGGGATCGCTTGCGGCTGGTGCGGCCATCGGCGCCGGCATCATCGTCACC
GTCGGCGTCCTCGGCGTGCTTGGCGCCCGCCTCCTCCGCAGCTACGCGGT
CGAAACCTCTGACGCGGCCGCCGCTGGCTTCGACGCCGGTTGGCAGATCT
TCGGCGCGCTGACATACGCCTATCTGGCCGTCTGCCTGGTGCGGCTTCCG
GAGCTGCCGGACTTGTTGCACGCCCGCGCGATCGAAAAGGTGCGTGACGT
CGAGAACGAGGCGGCCGGAGACGCCGGCACGCGCCGCTCGGGCTACTTCC
ACGCCGCCATGACGGCTGTCCTGCGTGACTTGTGGACGACCGCTCTCTTC
CTGCTGACGTTCGGCGGCTGGGGCCGGCTGGTCGCCGTGCCCGTGCCGGC
TGTCGTCGGAGTCGTCATCGGCCTCCTATTCGGTGGCGTCGTGGCCGGAT
CCATCGCGGCCGACCTGTTGGACTCTGGAGATGTTTCGGGCGCCTCCGTC
GCCGCCGGCGGCGGCGACGGCGGTGGCTTTACCCGCGCCGACAGCGTCGC
GAGCGCTTATGGCGTTGACGTCGCCGCCACTGGCCCTCGCCGCCGGAAGG
GCGCCGTTTCGTCAGCGGTGACGAACGCGGCGGTGCGGGCAGGTGGCGTC
ATCTCGGAGCGGGAGGAGGCGCGCGTAATCTCCTCCGTCTGGGAGGAGCG
GCGCGTCCAGATTATCGGGGAGTTGCCGCCCGAGCGGCGCTGGACGGTAG
CGCACATGGCGAGCGGCCTCCACCTCGGCGAGAGCGCGCGTTCCATCCAC
GCTTCGCTGCACCAGGATAGCCAGGGCGCCATGATGACGCCGCCGCCGCC
GCCGCAGCGCCGCTCCATCAGCGGTGGCAGCGTCGGCTTTAACAATGGCG
TCGGCCGCGCCCCCGTCTCGGGAGAGCACACCATGGCCGCGGCGGGGCCG
CCACTACCCGAGGACGAACCGGTCAGCGCCTTCCACGGCGACGACTACGA
CTGCTACGGAGTCGGCGGCGGCGGCGATCACGGCGCCGCGGAGGAAGGCG
CTTCGCTGGAGACTGTGGAGGACATTCTGGCAGGGGCGCGCGCCCGGGCG
GCGGCGGCGGCGGTACCGACGCCGGCGCCGCCGACGACGGTGGCGCCGAA
GCCGCCGGGACTGCTGAGGGTGCCGTCGCGCGCAAAGCTGATGCCAGCGC
CGGAGCCGGAGGCGCCGCTGACGCCGACGCGGGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1301:684..2718-

>mRNA_P-wetherbeei_contig1301.2.1 ID=mRNA_P-wetherbeei_contig1301.2.1|Name=mRNA_P-wetherbeei_contig1301.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1434bp|location=Sequence derived from alignment at P-wetherbeei_contig1301:684..2718- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGGCATGGCAGATAAAGACTCGAGGTTTACCCTCATCCTCGCGGG
CCTCCTCGTCGGCGGCGCGTCGAGTCTCTTTAGCGCCATGGCAATGGTAA
ACAACATCTTTATGATTCCTTCGTTCTTCATCTTCCTGCGATTGGCCATC
CTGGCGAGGACCGTCGTCTCGTCCTTCGCCCGCTTCGCGCCCAACTCGTC
GGGATCGCTTGCGGCTGGTGCGGCCATCGGCGCCGGCATCATCGTCACCG
TCGGCGTCCTCGGCGTGCTTGGCGCCCGCCTCCTCCGCAGCTACGCGGTC
GAAACCTCTGACGCGGCCGCCGCTGGCTTCGACGCCGGTTGGCAGATCTT
CGGCGCGCTGACATACGCCTATCTGGCCGTCTGCCTGGTGCGGCTTCCGG
AGCTGCCGGACTTGTTGCACGCCCGCGCGATCGAAAAGGTGCGTGACGTC
GAGAACGAGGCGGCCGGAGACGCCGGCACGCGCCGCTCGGGCTACTTCCA
CGCCGCCATGACGGCTGTCCTGCGTGACTTGTGGACGACCGCTCTCTTCC
TGCTGACGTTCGGCGGCTGGGGCCGGCTGGTCGCCGTGCCCGTGCCGGCT
GTCGTCGGAGTCGTCATCGGCCTCCTATTCGGTGGCGTCGTGGCCGGATC
CATCGCGGCCGACCTGTTGGACTCTGGAGATGTTTCGGGCGCCTCCGTCG
CCGCCGGCGGCGGCGACGGCGGTGGCTTTACCCGCGCCGACAGCGTCGCG
AGCGCTTATGGCGTTGACGTCGCCGCCACTGGCCCTCGCCGCCGGAAGGG
CGCCGTTTCGTCAGCGGTGACGAACGCGGCGGTGCGGGCAGGTGGCGTCA
TCTCGGAGCGGGAGGAGGCGCGCGTAATCTCCTCCGTCTGGGAGGAGCGG
CGCGTCCAGATTATCGGGGAGTTGCCGCCCGAGCGGCGCTGGACGGTAGC
GCACATGGCGAGCGGCCTCCACCTCGGCGAGAGCGCGCGTTCCATCCACG
CTTCGCTGCACCAGGATAGCCAGGGCGCCATGATGACGCCGCCGCCGCCG
CCGCAGCGCCGCTCCATCAGCGGTGGCAGCGTCGGCTTTAACAATGGCGT
CGGCCGCGCCCCCGTCTCGGGAGAGCACACCATGGCCGCGGCGGGGCCGC
CACTACCCGAGGACGAACCGGTCAGCGCCTTCCACGGCGACGACTACGAC
TGCTACGGAGTCGGCGGCGGCGGCGATCACGGCGCCGCGGAGGAAGGCGC
TTCGCTGGAGACTGTGGAGGACATTCTGGCAGGGGCGCGCGCCCGGGCGG
CGGCGGCGGCGGTACCGACGCCGGCGCCGCCGACGACGGTGGCGCCGAAG
CCGCCGGGACTGCTGAGGGTGCCGTCGCGCGCAAAGCTGATGCCAGCGCC
GGAGCCGGAGGCGCCGCTGACGCCGACGCGGGCG
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