mRNA_P-wetherbeei_contig13007.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig13007.2.1
Unique NamemRNA_P-wetherbeei_contig13007.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: A0A2N3WPI4_9PSEU (Steroid delta-isomerase-like uncharacterized protein n=6 Tax=Amycolatopsis TaxID=1813 RepID=A0A2N3WPI4_9PSEU)

HSP 1 Score: 120 bits (301), Expect = 1.020e-32
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   16 DPLHIANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQFSTLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARKGETVKLELACIWTIRDGRVADYHDYG 378
            DP+ +A R++ AYN+ D D L  L   DIHVEHHNRG  +   +A   +++ F    PD+ F + R     GDTVV E TW GT   DV GFA  GE  +++L   +T+RDG V +YHDYG
Sbjct:    5 DPVKVAERFVEAYNSGDRDALLALCAEDIHVEHHNRGVDLNDRDAFGDIIKGFEAAFPDKHFENRRALHSDGDTVVVEHTWVGTAQADVPGFATAGEVARIDLCSRYTVRDGLVVEYHDYG 125          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: UPI0003FEC2B4 (nuclear transport factor 2 family protein n=1 Tax=Amycolatopsis thermoflava TaxID=84480 RepID=UPI0003FEC2B4)

HSP 1 Score: 112 bits (280), Expect = 1.570e-29
Identity = 50/121 (41.32%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   16 DPLHIANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQFSTLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARKGETVKLELACIWTIRDGRVADYHDYG 378
            +P+ +A R++ AYN+ D D L  L   DI V HHNRG  +    A   +++ F    PD+ F + R +   GD+V+ E TW GT   DV GFA  GE  +++L   +T+RDG V +YHDYG
Sbjct:    5 EPVEVAERFVEAYNSGDRDRLLALCAEDIRVVHHNRGVDLSDKNAFGDIVKGFEAAFPDKHFENRRARHTDGDSVIIEHTWVGTAQADVPGFATAGEVARIDLCSRYTVRDGLVVEYHDYG 125          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: A0A8J6IFZ4_9ACTN (Nuclear transport factor 2 family protein n=1 Tax=Sporichthya sp. TaxID=65475 RepID=A0A8J6IFZ4_9ACTN)

HSP 1 Score: 109 bits (272), Expect = 2.480e-28
Identity = 53/124 (42.74%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   10 MTDPLHIANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQFSTLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARK-GETVKLELACIWTIRDGRVADYHDYG 378
            M D   +AN ++ AYNA D D L  L   +I V HHNRG  + G EA   ++  F    PD+RF + R +   GDT V   TW GT    V GFA   G+  KL+L  I+T++DG +  YHDYG
Sbjct:    1 MADAASVANAFVDAYNAGDDDALLALCAENIEVVHHNRGVEVSGREAFGGLLGAFKGAFPDKRFENRRAEHSDGDTAVIAHTWTGTAAAAVPGFAENAGDVAKLDLCTIYTVKDGLIVSYHDYG 124          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: A0A426QV30_9NOCA (Nuclear transport factor 2 family protein n=1 Tax=Rhodococcus sp. Eu-32 TaxID=1017319 RepID=A0A426QV30_9NOCA)

HSP 1 Score: 105 bits (263), Expect = 6.430e-27
Identity = 52/127 (40.94%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 TTAMTDPLHIANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQFSTLLPDRRFHSLRRQFVSGD-TVVSELTWEGTPTDDVEGFARKGETVKLELACIWTIRDGRVADYHDYG 378
            +T     + I  ++IAAYN+ D   +  +   ++HVEHHNRG  +  AEA   ++ QF+   PD+ F + R   V GD TVV E TW  T   DV G+A  GETV+L+++  +T+ +G V +YHDYG
Sbjct:    2 STQTQTAVEIVEKFIAAYNSGDIPGILEVSAENLHVEHHNRGVSLDSAEAFADLLGQFAGAFPDKHFENRRALHVVGDDTVVVEQTWVATAIADVPGWAATGETVRLDVSTRFTVENGVVTEYHDYG 128          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: A0A2S2BVK5_9NOCA (SnoaL-like domain-containing protein n=5 Tax=unclassified Rhodococcus TaxID=192944 RepID=A0A2S2BVK5_9NOCA)

HSP 1 Score: 95.5 bits (236), Expect = 8.970e-23
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:   28 IANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQFSTLLPDRRFHSLRRQFVSGD-TVVSELTWEGTPTDDVEGFARKGETVKLELACIWTIRDGRVADYHDYG 378
            +  ++I AYN+ D   +  +   D+ VEHHNRG  +  A+A   ++  F+   PD+ F + R   V  D TV+ E TW  T   DV G+A+ GETV+L++   +T+ +G V +YHDYG
Sbjct:   16 VVEKFIEAYNSGDVAAILEVTAPDLTVEHHNRGVKVDSAQAFADLLASFAGAFPDKHFENRRALHVVDDNTVLVEQTWVATAIADVPGWAQTGETVRLDVCTRFTVHEGVVTEYHDYG 133          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: UPI0015F03894 (nuclear transport factor 2 family protein n=1 Tax=Pseudonocardia pini TaxID=2758030 RepID=UPI0015F03894)

HSP 1 Score: 94.0 bits (232), Expect = 2.980e-22
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 1
Query:   28 IANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQF-STLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARKGETVKLELACIWTIRDGRVADYHDYG 378
            I   ++ AYNA+DF+ +  L++  +  +H+NRG     A  L+A +R F S  LPDR+     R  V GD V  E  W GT   D+ GF  +G+T+   L  ++T+RDG + +Y+DYG
Sbjct:    9 IVEAYVDAYNAQDFEAMEALLSPQLDFQHYNRGFSFASAAELVATLRAFASDYLPDRKLGPALRVNVVGDVVYREQQWGGTLAVDLPGFGSQGDTLDDRLLTVFTVRDGVITEYYDYG 126          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: A0A4S3K4G9_9GAMM (SnoaL-like protein n=1 Tax=Panacagrimonas perspica TaxID=381431 RepID=A0A4S3K4G9_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 1.170e-21
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   10 MTDPLHIANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQFS-TLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARKGETVKLELACIWTIRD-GRVADYHDYG 378
            M D + ++NR +AAYNAKDFDTL  L+  D+   H NRG      + L+AV++ F+  L+PDR+   L R  V GD +V   +W GT   D+ GF   G+ + + +  I    D G + ++ D+G
Sbjct:    1 MKDLVALSNRIVAAYNAKDFDTLKSLVHPDLDFSHVNRGFSYSKRDDLIAVLQMFAGELMPDRQMGKLERSVVDGDVIVRVASWGGTARADIPGFGSAGDRIGITICSILRFDDAGLLVEWKDFG 125          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: A0A4R8XLZ0_9MICO (Nuclear transport factor 2 family protein n=1 Tax=Cryobacterium sp. TMS1-20-1 TaxID=1259223 RepID=A0A4R8XLZ0_9MICO)

HSP 1 Score: 86.7 bits (213), Expect = 2.140e-19
Identity = 43/122 (35.25%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   13 TDPLHIANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQFSTLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARKGETVKLELACIWTIRDGRVADYHDYG 378
            + P+ + + +I AYNA D D +  L+  DI++ H NRG L +G + ++ + R   +++PDR           G  V+ + T+ GTPT D+  F   GE   + LA ++TI DG+V  Y DYG
Sbjct:    5 SSPIEVVDDYIDAYNAFDVDRIGRLLADDIYLTHKNRGFLTEGKDPVIELYRGTPSVIPDRALVDRTMVTTDGTRVIVQHTFTGTPTVDLT-FGPAGEKFSIFLATVFTIEDGKVTKYEDYG 125          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: UPI0004BFACA1 (nuclear transport factor 2 family protein n=1 Tax=unclassified Streptomyces TaxID=2593676 RepID=UPI0004BFACA1)

HSP 1 Score: 70.9 bits (172), Expect = 4.550e-13
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   16 DPLHIANRWIAAYNAKDFDTLAGLMTAD--IHVEHHNRGALIKGAEALLAVMRQFSTLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARKGETVKLELACIWTIRDGRVADYHDY 375
            D + +A +WIAAYNA DF+  A LMTAD  + + + N   + +GA          S  L D R   +RR   SGD VV E+ W         G A  GE V+LE   + T RDGR++ Y +Y
Sbjct:    2 DNVELAQKWIAAYNAHDFEQQAALMTADGEVLIPYIN---IAQGAA--WEQTGSNSARLVDDRIIEVRRITASGDAVVIEMLWHAISRGG-PGMAPVGERVELENCIVLTFRDGRISRYVEY 117          
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Match: UPI001305375E (ester cyclase n=1 Tax=Paracraurococcus ruber TaxID=77675 RepID=UPI001305375E)

HSP 1 Score: 51.2 bits (121), Expect = 1.950e-5
Identity = 35/113 (30.97%), Postives = 53/113 (46.90%), Query Frame = 1
Query:   37 RWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLAVMRQFSTLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARK-GETVKLELACIWTIRDGRVADYHD 372
            R++A  NA+D      +   D +VEH  R     G  AL A  +     +PD R  +L  Q + GD V + +T+ GT T  + GFAR  G         +W ++ G  A++ D
Sbjct:   34 RYVALKNARDATRCGEIARVD-YVEHSGRSP--SGLAALAANWQAQFEAIPDLRV-TLDDQVIGGDRVAARMTYAGTHTRPLPGFARPTGRAFSFATFDLWRVQGGLFAEHWD 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig13007.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A2N3WPI4_9PSEU1.020e-3245.45Steroid delta-isomerase-like uncharacterized prote... [more]
UPI0003FEC2B41.570e-2941.32nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A8J6IFZ4_9ACTN2.480e-2842.74Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A426QV30_9NOCA6.430e-2740.94Nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A2S2BVK5_9NOCA8.970e-2338.14SnoaL-like domain-containing protein n=5 Tax=uncla... [more]
UPI0015F038942.980e-2238.14nuclear transport factor 2 family protein n=1 Tax=... [more]
A0A4S3K4G9_9GAMM1.170e-2137.60SnoaL-like protein n=1 Tax=Panacagrimonas perspica... [more]
A0A4R8XLZ0_9MICO2.140e-1935.25Nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI0004BFACA14.550e-1338.52nuclear transport factor 2 family protein n=1 Tax=... [more]
UPI001305375E1.950e-530.97ester cyclase n=1 Tax=Paracraurococcus ruber TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig13007contigP-wetherbeei_contig13007:1023..1403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog994479.GL877882_gene6877
PFAMsSnoaL
Model size381
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.8e-26
EggNOG OGs2DHM2@1|root,3006M@2|Bacteria,2IN95@201174|Actinobacteria
DescriptionSnoaL-like polyketide cyclase
Cds size372
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.5718775-CDS-P-wetherbeei_contig13007:1022..13941683185970.5718775-CDS-P-wetherbeei_contig13007:1022..1394Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig13007 1023..1394 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.5824423-UTR-P-wetherbeei_contig13007:1394..14031683185970.5824423-UTR-P-wetherbeei_contig13007:1394..1403Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig13007 1395..1403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig13007.2.1prot_P-wetherbeei_contig13007.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig13007 1023..1394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig13007.2.1

>prot_P-wetherbeei_contig13007.2.1 ID=prot_P-wetherbeei_contig13007.2.1|Name=mRNA_P-wetherbeei_contig13007.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=124bp
MTDPLHIANRWIAAYNAKDFDTLAGLMTADIHVEHHNRGALIKGAEALLA
VMRQFSTLLPDRRFHSLRRQFVSGDTVVSELTWEGTPTDDVEGFARKGET
VKLELACIWTIRDGRVADYHDYG*
back to top

mRNA from alignment at P-wetherbeei_contig13007:1023..1403-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig13007.2.1 ID=mRNA_P-wetherbeei_contig13007.2.1|Name=mRNA_P-wetherbeei_contig13007.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig13007:1023..1403- (Phaeothamnion wetherbeei SAG_119_79)
ACCACCGCCATGACCGACCCGCTGCACATTGCCAATCGCTGGATCGCGGC CTATAACGCCAAAGACTTCGACACGCTGGCGGGTTTGATGACCGCCGACA TTCATGTCGAGCATCACAATCGCGGCGCGTTAATCAAGGGCGCCGAAGCT CTGCTGGCCGTCATGCGTCAGTTCTCGACCCTGTTGCCCGATCGCCGCTT CCACTCCCTGCGGCGCCAGTTCGTAAGCGGCGACACGGTAGTCAGCGAGC TCACATGGGAGGGCACACCGACCGACGATGTCGAAGGTTTCGCCAGGAAA GGCGAAACCGTAAAGCTGGAACTCGCCTGCATCTGGACCATACGCGATGG CCGCGTGGCGGATTACCACGATTACGGTTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig13007:1023..1403-

>mRNA_P-wetherbeei_contig13007.2.1 ID=mRNA_P-wetherbeei_contig13007.2.1|Name=mRNA_P-wetherbeei_contig13007.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=372bp|location=Sequence derived from alignment at P-wetherbeei_contig13007:1023..1403- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGACCCGCTGCACATTGCCAATCGCTGGATCGCGGCCTATAACGC
CAAAGACTTCGACACGCTGGCGGGTTTGATGACCGCCGACATTCATGTCG
AGCATCACAATCGCGGCGCGTTAATCAAGGGCGCCGAAGCTCTGCTGGCC
GTCATGCGTCAGTTCTCGACCCTGTTGCCCGATCGCCGCTTCCACTCCCT
GCGGCGCCAGTTCGTAAGCGGCGACACGGTAGTCAGCGAGCTCACATGGG
AGGGCACACCGACCGACGATGTCGAAGGTTTCGCCAGGAAAGGCGAAACC
GTAAAGCTGGAACTCGCCTGCATCTGGACCATACGCGATGGCCGCGTGGC
GGATTACCACGATTACGGTTGA
back to top