mRNA_P-wetherbeei_contig130.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig130.4.1
Unique NamemRNA_P-wetherbeei_contig130.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig130.4.1 vs. uniprot
Match: A0A7S4A172_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A172_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.960e-26
Identity = 50/91 (54.95%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    7 DRSPIIIVDFTALTSGRIHNRFDKFSCNDPELKSGEAKQIAADYQ--AASRSLISCGHAFACGASVWRDAVAKLRDDNPGHFFAPVFPPQS 273
            D  P+I+V+FT L+ GRIHN+FD  +CNDPE KS  AK+I  DY+  A+   LI+ G   A G S WR A+A+LR + PG FFAPVFPP S
Sbjct:   56 DDKPLILVNFTKLSKGRIHNKFDPNACNDPEAKSALAKRIGEDYERYASDAELIASGDVRASGTSCWRAALAELRKERPGQFFAPVFPPPS 146          
BLAST of mRNA_P-wetherbeei_contig130.4.1 vs. uniprot
Match: A0A7S1ZJ12_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZJ12_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.010e-22
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   16 PIIIVDFTALTSGRIHNRFDKFSCNDPELKSGEAKQIAADYQAASR--SLISCGHAFACGASVWRDAVAKLRDDNPGHFFAPVFPPQ 270
            PIIIVD T + S  IH+RFD+ S ND    S + K+I ++Y+  +R  SLIS G    CG+SVWRDA+ +LRD+ PGH+F P+FPP+
Sbjct:   74 PIIIVDITQIDSN-IHSRFDRNSVNDSAAASSQRKKIESNYEQYARDSSLISVGTVIPCGSSVWRDAIIRLRDERPGHYFVPIFPPK 159          
BLAST of mRNA_P-wetherbeei_contig130.4.1 vs. uniprot
Match: A0A7S1BKV3_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BKV3_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.550e-20
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 EDDRSPIIIVDFTALTSGRIHNRFDKFSCNDPELKSGEAKQIAADYQAA--SRSLISCGHAFACGASVWRDAVAKLRDDNPGHFFAPVFPPQ 270
            + +  P++IVDFT LT G+IH++ DK S NDP+  S   K+I A Y+       L+S G    CG++VWR A+  LRD+  GH+F PVFPP+
Sbjct:   74 DGEGEPMLIVDFTDLTDGKIHSKHDKNSVNDPDAASSLRKKIEASYETYRDDTKLLSSGTIRPCGSTVWRSALIALRDERRGHYFCPVFPPK 165          
BLAST of mRNA_P-wetherbeei_contig130.4.1 vs. uniprot
Match: A0A7S4HN14_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HN14_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.500e-18
Identity = 40/91 (43.96%), Postives = 57/91 (62.64%), Query Frame = 1
Query:    4 DDRSPIIIVDFTALTSGRIHNRFDKFSCNDPELKSGEAKQIAADYQ--AASRSLISCGHAFACGASVWRDAVAKLRDDNPGHFFAPVFPPQ 270
            D   P+IIVD T L+  ++H+RFDK S ND    S   K +   Y+  A +  L++ G    CG +VWR A+ KLR+D PGH+F+P+FPP+
Sbjct:   77 DGGEPMIIVDMTNLSHEQLHSRFDKNSVNDSAAASELRKAVEGKYEEYAKNADLLAQGTIIPCGTTVWRMALVKLREDRPGHYFSPIFPPK 167          
BLAST of mRNA_P-wetherbeei_contig130.4.1 vs. uniprot
Match: B7GBC0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GBC0_PHATC)

HSP 1 Score: 82.8 bits (203), Expect = 6.830e-18
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   16 PIIIVDFTALTSGRIHNRFDKFSCNDPELKSGEAKQIAADYQAAS--RSLISCGHAFACGASVWRDAVAKLRDDNPGHFFAPVFPPQ 270
            P++I D T L++  IH++FD  S ND E  S   KQI  +Y+  S  +  ++ G    CG+SVWR A+ +LR D PGH+FAP+FPP+
Sbjct:   76 PMVIADLTMLSNCGIHSKFDHHSVNDSEASSKLRKQIEQNYREYSLRQEYLANGSIVPCGSSVWRSALVELRQDRPGHYFAPIFPPK 162          
BLAST of mRNA_P-wetherbeei_contig130.4.1 vs. uniprot
Match: A0A7S0UNP6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UNP6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.940e-18
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    4 DDRSPIIIVDFTALTSGRIHNRFDKFSCNDPELKSGEAKQIAADYQ--AASRSLISCGHAFACGASVWRDAVAKLRDDNPGHFFAPVFPPQS 273
            +D   +IIVD T L    IH++FD+ S N PE  S   K+I   Y   A S  L+S G    CG SVWRDA+ +LRDD PGH+F P+F P++
Sbjct:   62 EDGESMIIVDITQLNPD-IHSKFDRNSVNKPEEASALRKKIEKSYDEYAFSNDLLSEGTIIPCGTSVWRDALVRLRDDRPGHYFVPIFAPKA 152          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig130.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S4A172_9STRA7.960e-2654.95Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1ZJ12_9STRA5.010e-2251.72Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1BKV3_9STRA3.550e-2045.65Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4HN14_9STRA3.500e-1843.96Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
B7GBC0_PHATC6.830e-1844.83Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S0UNP6_9STRA6.940e-1846.74Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig130contigP-wetherbeei_contig130:2929..3308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr49650
Model size291
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.12e-18
EggNOG OGs2EY3E@1|root,2SZNJ@2759|Eukaryota
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185970.0136073-CDS-P-wetherbeei_contig130:2928..31361683185970.0136073-CDS-P-wetherbeei_contig130:2928..3136Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig130 2929..3136 -
1683185970.0240705-CDS-P-wetherbeei_contig130:3225..33081683185970.0240705-CDS-P-wetherbeei_contig130:3225..3308Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig130 3226..3308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig130.4.1prot_P-wetherbeei_contig130.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig130 2929..3308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig130.4.1

>prot_P-wetherbeei_contig130.4.1 ID=prot_P-wetherbeei_contig130.4.1|Name=mRNA_P-wetherbeei_contig130.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
EDDRSPIIIVDFTALTSGRIHNRFDKFSCNDPELKSGEAKQIAADYQAAS
RSLISCGHAFACGASVWRDAVAKLRDDNPGHFFAPVFPPQSSNKTT*
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mRNA from alignment at P-wetherbeei_contig130:2929..3308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig130.4.1 ID=mRNA_P-wetherbeei_contig130.4.1|Name=mRNA_P-wetherbeei_contig130.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=380bp|location=Sequence derived from alignment at P-wetherbeei_contig130:2929..3308- (Phaeothamnion wetherbeei SAG_119_79)
GAAGATGACAGATCTCCCATCATCATCGTCGACTTTACCGCTTTAACTTC TGGCAGAATTCACAATCGATTCGACAAGTTTTCGTAAGTATCTTAGTGGC AAAGAAGGTTGCAAGCTCTTTGCAATACGGGAACTTTGCTGACTCTCGTC GCACTTCCTTCTTTCTGCACAGTTGCAACGACCCGGAACTGAAGAGCGGG GAAGCCAAGCAGATCGCAGCTGACTACCAGGCGGCTAGCCGGAGCCTGAT TTCATGCGGACATGCGTTCGCATGCGGAGCGAGCGTGTGGCGCGATGCCG TGGCCAAGCTCCGCGACGACAATCCCGGCCACTTTTTTGCCCCTGTCTTC CCTCCCCAGAGTTCCAATAAAACAACTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig130:2929..3308-

>mRNA_P-wetherbeei_contig130.4.1 ID=mRNA_P-wetherbeei_contig130.4.1|Name=mRNA_P-wetherbeei_contig130.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig130:2929..3308- (Phaeothamnion wetherbeei SAG_119_79)
GAAGATGACAGATCTCCCATCATCATCGTCGACTTTACCGCTTTAACTTC
TGGCAGAATTCACAATCGATTCGACAAGTTTTCTTGCAACGACCCGGAAC
TGAAGAGCGGGGAAGCCAAGCAGATCGCAGCTGACTACCAGGCGGCTAGC
CGGAGCCTGATTTCATGCGGACATGCGTTCGCATGCGGAGCGAGCGTGTG
GCGCGATGCCGTGGCCAAGCTCCGCGACGACAATCCCGGCCACTTTTTTG
CCCCTGTCTTCCCTCCCCAGAGTTCCAATAAAACAACTTAG
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