mRNA_P-wetherbeei_contig12983.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12983.1.4
Unique NamemRNA_P-wetherbeei_contig12983.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: D7FT09_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT09_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 7.620e-40
Identity = 97/251 (38.65%), Postives = 127/251 (50.60%), Query Frame = 1
Query:   28 RLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSRANRCRRPPKNKQPGQESEVVGYVLGRIEEGSA-------PPPPLP----QHRAGGAGRAAQLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDLRQLPSPLQRQ 747
            RLARK D+ +IR CNL+TLPENY+  FY+ H+  WP+LALVAEHA R+                                                      +   Q+ +VVGYVLGRIE   A           LP    + +  G G A  +PP P GHVTSLAVLP +RR G   +LM+ LHE+M   + A    LHVR SN GA+RLY ++L Y V  V   YY+D EDA++M+++L ++ S   RQ
Sbjct:   33 RLARKSDIKSIRHCNLETLPENYSTDFYDTHIKDWPELALVAEHADRR------------------------------------------------------RNEDQQPQVVGYVLGRIEVNHANXXXXXXXXTALPGWSCRTQKSGRGGAMAIPP-PTGHVTSLAVLPGFRRCGAASQLMDMLHERMNYHYKANKVSLHVRKSNRGAIRLYEELLGYKVAGVASSYYSDGEDAFVMEAELPEVDSQEDRQ 228          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: A0A6H5KNJ0_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ0_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 6.050e-38
Identity = 95/243 (39.09%), Postives = 125/243 (51.44%), Query Frame = 1
Query:   28 RLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSRANRCRRPPKNKQPGQESEVVGYVLGRIEEGSA-----PPPPLP--QHRAGGAGRA-AQLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDLRQLPS 732
            RLARK D+ +IR CNL+TLPENY+  FY+ H+  WP+LALVAEHA R+                                                      +   Q+ +VVGYVLGRIE  +A         LP    R   +GR  A +  PP GHVTSLAVLP +RR G   +LM+ LHE+M   + A    LHVR SN GA+RLY ++L Y V  V   YY+D EDA++M+++L ++ S
Sbjct:   33 RLARKSDIKSIRHCNLETLPENYSTDFYDTHIKDWPELALVAEHADRR------------------------------------------------------RNEDQQPQVVGYVLGRIEINNANXXXXXXTALPGWSCRTQKSGRGGAMMKAPPTGHVTSLAVLPGFRRCGAASQLMDMLHERMNYHYRANKVSLHVRKSNRGAIRLYEELLGYKVAGVASSYYSDGEDAFVMEAELPEVDS 221          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: B7G3Z7_PHATC (N-acetyl transferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G3Z7_PHATC)

HSP 1 Score: 139 bits (351), Expect = 4.120e-35
Identity = 96/247 (38.87%), Postives = 131/247 (53.04%), Query Frame = 1
Query:    1 QPHQHGVLVRLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSRANRCRRPPKNKQPGQESEVVGYVLGRIEEGSA--------PPPPLPQHRAGGAGRAAQLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDL 717
            QP QH + +RLARK D+  +++CN+ TLPENY PQFY  HL +WP+LALVAE       C+E     A   R     +P+ +SS   F   F  +A     ++    P ++ +   ES +V YV+G++EE           P     +H   G  R   +    LGHVTSLAVLP +RR G+ + LME LH  + + +G  +  LHVRVSNE A +LY     Y     I  YY D EDA+ M+  L
Sbjct:   59 QPQQH-ITLRLARKTDIPGLQACNIATLPENYNPQFYANHLRTWPELALVAE-------CHEELDLDARTERDKSRHSPTPLSSYSPFGYTFHHLANGHGSSHNSNNPSRDAK--SESNIVAYVIGKVEERQVLLDDDHWQPT----EHDMYGMPRRRYVTQ-KLGHVTSLAVLPSHRRQGLAQTLMEQLHYHLISCYGVDSVGLHVRVSNEAAGKLYSQH-GYEEAEQISSYYQDGEDAFFMKKIL 289          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: A0A7S1G113_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G113_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.350e-34
Identity = 96/247 (38.87%), Postives = 125/247 (50.61%), Query Frame = 1
Query:    1 QPHQHGVLVRLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSRANRCRRPP------KNKQPGQ--ESEVVGYVLGRIEEGSAPPPPLPQHRAGGAGRAAQLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDL 717
            +PH   VL+R+AR+ DV  I+SCNL  LPENY   FY  HL  WP+LALVAE                       + +P+  SS     T+    A R S       PP       + +P     +E++GYVLG++ E  A      + R G   R        +GHVTSLA++  +RR G+  +LM  LH  M+ SH A    LHVRVSN  A +LY + + Y V  VIK YY D EDAYLM+ DL
Sbjct:   30 RPH---VLLRVARRTDVQGIQSCNLANLPENYHTAFYVNHLRDWPELALVAER----------------------ITSPTAASSSNHMMTK---TASRDS-------PPATIPVHSSDEPSNVGNTEIIGYVLGKVREEEA------EGRPGHVER--------IGHVTSLAIMSDFRRQGLAGELMRQLHYNMQRSHSADGVGLHVRVSNVAATQLYSESMGYRVAGVIKGYYQDGEDAYLMRKDL 227          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: A0A7S3V5Y1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Y1_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.640e-34
Identity = 99/257 (38.52%), Postives = 127/257 (49.42%), Query Frame = 1
Query:    4 PHQHG-VLVRLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSRANRCRRPPKNKQPGQESEVVGYVLGRIEEGS--APPPPLPQHRAGGAGRAAQLPPPP-----------------LGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSD 714
            PH  G + +R+A + DV AI+ CNL TLPENY+  FY  HL  WP LALVAEH    V   E   +         +F P                  R+   N     P+N       E++GYVLG++EE +   PPPP P      +G AA     P                 LGHVTSLA+LP +RR G+  KLM+ LH  M+  H A    LHVRVSN  A +LY + + Y VV VI+ YY D EDA+ M+ +
Sbjct:   49 PHHKGHIALRVATRTDVPAIQRCNLATLPENYSSNFYVNHLRQWPDLALVAEHV---VEDNESNNSNG-------LFIP------------------RNPFDNYDASRPQN-------EIIGYVLGKVEETAILTPPPPSPNPSKIDSGGAADTWGNPNASEFQKQQQQQRGTEMLGHVTSLAILPTFRRRGLAAKLMKQLHYHMQEGHDADGVGLHVRVSNVAARKLYCEGMGYGVVDVIRGYYQDGEDAFFMRKN 270          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: A0A7S1U5X5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5X5_9STRA)

HSP 1 Score: 130 bits (326), Expect = 1.730e-31
Identity = 91/239 (38.08%), Postives = 115/239 (48.12%), Query Frame = 1
Query:   16 GVLVRLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSR--------ANRCRRPPKNKQPGQ-ESEVVGYVLGRIEEGSAPPPPLPQHRAGGAGRAAQLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLM 705
            GV VRLAR+ D+ AI + N +TLPENYT QFY QHL  WPQL  VAE         +            L     + +     H  + +      R          R   P ++    + E EV+GYVLGR+E+     P           RA        GH+TSLAV+  +RRLGV   LM  LHE M T + A    LHVR+SN  A RLY+D+L Y V   +  YY D EDAY+M
Sbjct:  137 GVSVRLARRADIDAIAAINQRTLPENYTRQFYIQHLMRWPQLNFVAEADRSTARALKDGTVSPEDLMLELPGGEHMATPDMSAHG-YGVPKRGGGRHFRGGLAGVGRDSSPVESDDDDEAEREVIGYVLGRMEDSLTTEP----------SRA--------GHITSLAVMEDFRRLGVAHALMRCLHENMCTHYDAENVSLHVRISNRAATRLYKDILGYKVAKTVSRYYHDGEDAYVM 356          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: A0A7S2LE69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LE69_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.480e-30
Identity = 95/266 (35.71%), Postives = 130/266 (48.87%), Query Frame = 1
Query:   19 VLVRLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSRANRCRRPPKNKQPGQESEVVGYVLGRIEEGSAPP----------PPLP-------QHRAGGAGRAAQL----------------PPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDL 717
            + VRLARK DV  I++CNL TLPENY   FY  H+  WP LALVAEH P     Y+ +R     +  S V     I+    + T+ R   + S++      PP+        E+VGY+LG++EE    P          PPL        Q+  G     A++                    LGHVTS+AV    RRLG+   L++ LH  +   + A +  LHVR+SN+ A++LY + L Y V  +I  YY D EDAY M+ DL
Sbjct:  102 ICVRLARKSDVPQIQNCNLATLPENYNANFYVNHMRQWPDLALVAEHIPEG---YDLQRDME--SHGSAVEEEERITPLREYITKKRRRGDGSNQ------PPRK-------EIVGYILGKVEERPVNPIRQIFPQSRVPPLYDEEDTLLQYMDGANMNGARVFRQANQNXXXXXXXXXXTETLGHVTSIAVHSHARRLGIASSLLDQLHYHLGQCYNAKSVGLHVRISNQAAVKLYCERLGYDVADIIPFYYGDGEDAYFMKKDL 349          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: A0A4D9D365_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D365_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.030e-29
Identity = 95/269 (35.32%), Postives = 120/269 (44.61%), Query Frame = 1
Query:   19 VLVRLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSRANRCRRPPKNKQPGQESEVVGYVLGRIEEGSAPPP-------------------PLPQHR----------------AGGAGRAAQLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDLR 720
            V +R AR+ D+ AI +CNL+TLPENY   FY  HL  WP LALVAE   RQ                                +  R+  ER + A         +  G+  ++VGYVLGR+E     PP                   P P                    G A  A   P    GHV+SLAVL  +RRLG+ R+LME LH QM+  +G   S LHVR SN GA +LY + L Y VV  ++ YY D  DAY M+ + R
Sbjct:  137 VCIRTARREDIPAIEACNLKTLPENYPNAFYYNHLLQWPYLALVAE---RQ--------------------------------SSARVEGERGAGAA----TDAGETGGEGKKIVGYVLGRVEVSKRSPPEGVSTASQLQGDYFPGVGPPSPXXXXXXXXXXXXXXXXXXXGGAAAAAGAYPGRKTGHVSSLAVLDDFRRLGIARELMEILHVQMKFRYGVDCSTLHVRCSNRGAQKLYLNSLGYRVVETVQKYYQDGADAYYMKLNFR 366          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: A0A7S2HE16_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE16_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.350e-25
Identity = 58/121 (47.93%), Postives = 82/121 (67.77%), Query Frame = 1
Query:  355 EVVGYVLGRIEEGSAPPPPLPQHRAGGAGRAAQLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDL 717
            EVVGYVLGR+E G++        +AG   R  +      GH+TSLAV+P +RRLG+ +++ME +H QMR  + A  S LHVR++NEGA+RLY++ L Y  + VI +YY+D EDA+LM + L
Sbjct:   97 EVVGYVLGRMETGTS--------KAGLVNRMTRH-----GHITSLAVMPDFRRLGLAQQMMEKVHSQMRLHYSADKSSLHVRITNEGAVRLYQNSLGYETMQVIGNYYSDGEDAFLMTASL 204          
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Match: C4Y012_CLAL4 (N-acetyltransferase domain-containing protein n=2 Tax=Clavispora lusitaniae TaxID=36911 RepID=C4Y012_CLAL4)

HSP 1 Score: 103 bits (258), Expect = 4.640e-23
Identity = 84/236 (35.59%), Postives = 113/236 (47.88%), Query Frame = 1
Query:   16 GVLVRLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALVAE-HAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSSRANRCRRPPKNKQPGQESEVVGYVLGRIEEGSAPPPPLPQHRAGGAGRAAQLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVRVSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDLR 720
            GV +R A   DV A+++ NL  LPENY  ++Y  H+ SWPQ + VA  + P   H    +         + V A S  +   F  T    V +        R+  K         +VGYVLG++E+      P  + +             P GHVTSLAV+  YRR+G+  KLM+     M     A    LHVR SN  AL LYRD L++ V S+ K YY D EDAY M+ DL+
Sbjct:    2 GVTIRRATIEDVQAMQNANLLNLPENYELKYYMYHILSWPQASFVATTYDPEDYHSTLDDEDEE-----TEVLAES--NGTGFLDT----VQDPKGDTAYIRKGEK---------IVGYVLGKMEDD-----PDAEDKT------------PHGHVTSLAVMRTYRRMGLAEKLMKQSLYAMCECLRAEYVSLHVRKSNRAALHLYRDSLKFEVSSIEKSYYQDGEDAYAMRKDLK 200          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12983.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT09_ECTSI7.620e-4038.65N-acetyltransferase domain-containing protein n=1 ... [more]
A0A6H5KNJ0_9PHAE6.050e-3839.09N-acetyltransferase domain-containing protein n=1 ... [more]
B7G3Z7_PHATC4.120e-3538.87N-acetyl transferase n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S1G113_9STRA1.350e-3438.87Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S3V5Y1_9STRA4.640e-3438.52Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1U5X5_9STRA1.730e-3138.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2LE69_9STRA1.480e-3035.71Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A4D9D365_9STRA1.030e-2935.32N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S2HE16_9STRA3.350e-2547.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
C4Y012_CLAL44.640e-2335.59N-acetyltransferase domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12983contigP-wetherbeei_contig12983:453..1791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FT09
Preferred namenaa10
PFAMsAcetyltransf_1,RSD-2
Model size878
Max annot lvl2759|Eukaryota
KEGG koko:K00670,ko:K20791
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0012505,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0070013
Exons4
Evalue1.25e-40
EggNOG OGsCOG0456@1|root,KOG3235@2759|Eukaryota
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-24_004370.1
EC2.3.1.255,2.3.1.256
DescriptionN-terminal peptidyl-glutamic acid acetylation
Cds size876
COG categoryJ
BRITEko00000,ko01000,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185969.1924145-CDS-P-wetherbeei_contig12983:452..6321683185969.1924145-CDS-P-wetherbeei_contig12983:452..632Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12983 453..632 +
1683185969.2043862-CDS-P-wetherbeei_contig12983:729..8251683185969.2043862-CDS-P-wetherbeei_contig12983:729..825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12983 730..825 +
1683185969.2141762-CDS-P-wetherbeei_contig12983:871..11501683185969.2141762-CDS-P-wetherbeei_contig12983:871..1150Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12983 872..1150 +
1683185969.223307-CDS-P-wetherbeei_contig12983:1468..17891683185969.223307-CDS-P-wetherbeei_contig12983:1468..1789Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12983 1469..1789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12983.1.4prot_P-wetherbeei_contig12983.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12983 453..1789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12983.1.4

>prot_P-wetherbeei_contig12983.1.4 ID=prot_P-wetherbeei_contig12983.1.4|Name=mRNA_P-wetherbeei_contig12983.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=292bp
QPHQHGVLVRLARKGDVAAIRSCNLQTLPENYTPQFYEQHLASWPQLALV
AEHAPRQVHCYERERARAHFARFSLVFAPSLISSCCFFHTRFRLVAERSS
RANRCRRPPKNKQPGQESEVVGYVLGRIEEGSAPPPPLPQHRAGGAGRAA
QLPPPPLGHVTSLAVLPPYRRLGVGRKLMEGLHEQMRTSHGAGTSRLHVR
VSNEGALRLYRDVLRYSVVSVIKHYYADSEDAYLMQSDLRQLPSPLQRQQ
QQQRVQQHSEQEHFAGLGQHRQRGEGDAVRARYHAGRPAAAG
back to top

mRNA from alignment at P-wetherbeei_contig12983:453..1791+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12983.1.4 ID=mRNA_P-wetherbeei_contig12983.1.4|Name=mRNA_P-wetherbeei_contig12983.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1339bp|location=Sequence derived from alignment at P-wetherbeei_contig12983:453..1791+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGCACCAGCATGGCGTCCTCGTGCGACTGGCGCGCAAGGGCGACGT CGCAGCCATCCGCAGCTGCAACCTGCAGACGCTACCGGAGAATTACACGC CGCAGTTCTATGAGCAGCACCTCGCCAGCTGGCCGCAGCTCGCCCTCGTC GCTGAGCACGCACCTCGGCAGGTACATTGTGTGGTATGTGCTGACGGCGC AGTGTGGTTGCAGCGCGACCGAATAGAGAAGTCCAAACCGTGATGAACCC GGATTGGACCAAACCGGGCCAACGCAGTATGAACGGGAAAGGGCTCGTGC CCATTTCGCGCGTTTTTCCTTGGTTTTCGCACCATCGCTGATTTCCAGTT GCTGCTTCTTTCACACACGCTTCGTAAAACCTGGCGTGCTTTCGCGGCTT CAGCCTTACCGCTGGCGAGAGGCTTGTTGCCGAACGCTCTTCCCGCGCCA ATCGCTGCCGCCGGCCCCCAAAAAACAAACAGCCGGGCCAAGAGTCGGAA GTGGTGGGCTACGTCCTCGGCCGCATTGAGGAGGGATCCGCACCGCCGCC GCCGCTGCCGCAGCACAGGGCAGGTGGCGCCGGGCGGGCGGCGCAGCTTC CGCCGCCGCCGCTGGGGCACGTGACGTCCCTGGCGGTGCTGCCGCCGTAC CGCCGCCTCGGTGTCGGGCGCAAGCTAATGGAGGGGCTTCACGAACAGGT GAGCGGTGGGCGGGGCAGTTGACGTTTCGTAGTTGCTGCTGTCCACCCGT TTTTGTGTGTCTCTTGCTCTTTCACTCTTTGGCTTGCAGAATATGTGCAG CCTTGTTTGCTTCCGCAATAGCACTTTTCCTTTTGCTCTCCCACGCTACG AAATGAAAGAGGTGGCTGCCATCGCCGGAAGAGACTGGATAATCGGATTT AAACTGCCTTACTAGCGGGCTTTGCGGGTTTGCCTTTCCTTATCGAAACC GTTCCCTTCCCTTTCCGGATCGCGCCGGCCTTGTCCGCCTCTTTGCTGGG CCACTGACCGCGCCAGATGCGGACGAGTCACGGCGCGGGAACGAGCCGGC TGCACGTGCGCGTCAGCAACGAGGGGGCATTGCGGCTGTACCGCGATGTG CTCCGCTACTCGGTCGTCTCCGTCATCAAGCACTACTATGCCGACTCCGA GGATGCCTACCTCATGCAATCCGACCTGCGGCAGCTGCCGTCTCCGCTGC AGCGGCAGCAGCAGCAGCAGCGGGTGCAGCAGCACTCGGAGCAGGAGCAT TTTGCGGGGTTGGGACAGCATCGGCAGCGCGGCGAAGGCGACGCCGTGCG GGCGCGCTACCACGCCGGACGCCCGGCTGCCGCCGGGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12983:453..1791+

>mRNA_P-wetherbeei_contig12983.1.4 ID=mRNA_P-wetherbeei_contig12983.1.4|Name=mRNA_P-wetherbeei_contig12983.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=876bp|location=Sequence derived from alignment at P-wetherbeei_contig12983:453..1791+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCCGCACCAGCATGGCGTCCTCGTGCGACTGGCGCGCAAGGGCGACGT
CGCAGCCATCCGCAGCTGCAACCTGCAGACGCTACCGGAGAATTACACGC
CGCAGTTCTATGAGCAGCACCTCGCCAGCTGGCCGCAGCTCGCCCTCGTC
GCTGAGCACGCACCTCGGCAGGTACATTGTTATGAACGGGAAAGGGCTCG
TGCCCATTTCGCGCGTTTTTCCTTGGTTTTCGCACCATCGCTGATTTCCA
GTTGCTGCTTCTTTCACACACGCTTCAGGCTTGTTGCCGAACGCTCTTCC
CGCGCCAATCGCTGCCGCCGGCCCCCAAAAAACAAACAGCCGGGCCAAGA
GTCGGAAGTGGTGGGCTACGTCCTCGGCCGCATTGAGGAGGGATCCGCAC
CGCCGCCGCCGCTGCCGCAGCACAGGGCAGGTGGCGCCGGGCGGGCGGCG
CAGCTTCCGCCGCCGCCGCTGGGGCACGTGACGTCCCTGGCGGTGCTGCC
GCCGTACCGCCGCCTCGGTGTCGGGCGCAAGCTAATGGAGGGGCTTCACG
AACAGATGCGGACGAGTCACGGCGCGGGAACGAGCCGGCTGCACGTGCGC
GTCAGCAACGAGGGGGCATTGCGGCTGTACCGCGATGTGCTCCGCTACTC
GGTCGTCTCCGTCATCAAGCACTACTATGCCGACTCCGAGGATGCCTACC
TCATGCAATCCGACCTGCGGCAGCTGCCGTCTCCGCTGCAGCGGCAGCAG
CAGCAGCAGCGGGTGCAGCAGCACTCGGAGCAGGAGCATTTTGCGGGGTT
GGGACAGCATCGGCAGCGCGGCGAAGGCGACGCCGTGCGGGCGCGCTACC
ACGCCGGACGCCCGGCTGCCGCCGGG
back to top