mRNA_P-wetherbeei_contig12982.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12982.1.1
Unique NamemRNA_P-wetherbeei_contig12982.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: A0A371BAL8_9HYPH (DUF2865 domain-containing protein n=2 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371BAL8_9HYPH)

HSP 1 Score: 278 bits (710), Expect = 3.850e-90
Identity = 145/259 (55.98%), Postives = 186/259 (71.81%), Query Frame = 1
Query:    1 RKSMHGAKSGGRAMAILGQKSKFCLAAAVLSLGLAAIWLPHPASAGFFDRLFGDVRRAVEGPRAPAAAPFVDPFTSLANHFNPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGM----SNNAANFTPIENYARLSKTTREKLAETKVMGPAPGAPASDITSAI 765
            R+S HG   GG  MA  G+K  F   AA   L L  + LP PASAGFFDRLFG + RA+EGP A A +   DPFTSL +H   S   ++R++  + GP+KAFCVR+CDGH+FPV    G+SAA +C SFCPA++TK+F GS+ID ATANDG RYAD+PNA+ YRK + ++CTCNG++PFGLA +DA +DPTLRPGDIVAT++GL A+TG     SN AANFTP+++Y  LSK  R+ L++TK+  P P     DITS+I
Sbjct:   22 RRSNHG--EGGSVMAFAGKKQTFRAVAAAGILALVMLALPQPASAGFFDRLFGSISRAIEGPGAAAVS---DPFTSLIDHLGASPDTRIRSE--NAGPAKAFCVRSCDGHYFPVLSHNGLSAAEACHSFCPATQTKLFVGSDIDYATANDGSRYADMPNAYAYRKQLASNCTCNGRTPFGLAHIDARTDPTLRPGDIVATEAGLLAYTGKGADRSNVAANFTPVQDYNGLSKAMRDTLSDTKIASPRPRP--GDITSSI 271          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: UPI0010BF57B4 (DUF2865 domain-containing protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BF57B4)

HSP 1 Score: 263 bits (673), Expect = 5.260e-85
Identity = 138/248 (55.65%), Postives = 178/248 (71.77%), Query Frame = 1
Query:   40 MAILGQKSKFCLAAAVLSLGLAAIWLPHPASAGFFDRLFGDVRRAVEGPRAPAAAPFVDPFTSLANHFNPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGM----SNNAANFTPIENYARLSKTTREKLAETKVMGPA--PGAPASDITSAI 765
            MA+ G+K  F       +L L  + LP PASAGFF+RLFG + RA+EGP    AA   DP TSL +H   S   ++R    ++GP+KAFCVR+CDGH+FPV    G+SAA +CRSFCPA++TK+F GS ID ATA+DG RYAD+PNA+ YRK + ++CTCNG++PFGLA +DA +DPTLRPGDIVAT++GL AFTG     +N AANFTPI+NY  LS+  R+KL++TK+  P   PG    DITS+I
Sbjct:    1 MAVAGKKLAFRAIVPTGALALVVLALPQPASAGFFERLFGGIGRAIEGP----AAAVSDPVTSLIDHLGASQDTRVRPT--NSGPAKAFCVRSCDGHYFPVLSHNGMSAAEACRSFCPATQTKLFTGSEIDYATASDGSRYADMPNAYAYRKKIASNCTCNGRTPFGLAHIDARTDPTLRPGDIVATETGLLAFTGKGGDRTNVAANFTPIQNYNGLSQAVRDKLSDTKIAAPTLVPG----DITSSI 238          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: A0A0Q7TIX6_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TIX6_9HYPH)

HSP 1 Score: 263 bits (673), Expect = 5.620e-85
Identity = 141/256 (55.08%), Postives = 173/256 (67.58%), Query Frame = 1
Query:   40 MAILGQKSKFCLAAAVLSLGLAAIW-LPHPASAGFFDRLFGDVRRAVEGPRAPAAAPFVDPFTSLANHFNPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGM-----SNNAANFTPIENYARLSKTTREKLAETKVMGPAPGAPASDITSAITPVNDNLR 789
            MA   +K  F   A    LG+ A+  LP PASAGFFDRLFG + RA+E    PA AP  DPFTSL  H    + +       ++GP+KAFCVR+CDGH+FPV   AG+SAA +C SFCPA+ETK+F GS+ID AT NDG RYADLPNA+ YRK + + CTCNG++ FGLA +DA +DPTLRPGDIVAT++GL AFTG      SN  ANFTP+++YA LSK  R +L  TKV  PAP     D+TS+I     N R
Sbjct:    1 MARASKKRMFQALALGTGLGVVALLTLPAPASAGFFDRLFGSIGRAIE---RPAPAPTSDPFTSLLGHIGGGEGDSSHVRAENSGPAKAFCVRSCDGHYFPVVAHAGMSAADACHSFCPAAETKLFVGSDIDYATTNDGSRYADLPNAYAYRKKLASGCTCNGRTAFGLAHIDATTDPTLRPGDIVATETGLMAFTGKGGADRSNVTANFTPVQDYAGLSKAARSQLGATKVARPAPQQ--GDVTSSIPQAALNAR 251          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: A0A345ZYA7_9HYPH (DUF2865 domain-containing protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZYA7_9HYPH)

HSP 1 Score: 239 bits (609), Expect = 2.200e-75
Identity = 126/254 (49.61%), Postives = 172/254 (67.72%), Query Frame = 1
Query:   55 QKSKFCLAAAVLSLGLAAIWLPHPASA-GFFDRLFGDVRRAVEGPRAPAAAPFVDPFTSLANHFN--PSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGMSNNAANFTPIENYARLSKTTREKLAETKVMGPAPGAPASDITSAITPVNDNLRDASRGQ 807
            +K+ F L+A VL+  + A  +P  A+A G F+ LFG +RRA+E P A + + + DP+ S A   +  P+ RE       ++GPS+ FCVRTCDG +FPVQ    +SAA  C +FCPA+ETK++ GSNID ATA DG RYADL NAFLYR+ MV  CTCNG+  +GLA + AA DPTL+PGD+V  ++GL A+TG  N +A+FTP+++Y+  SK+ RE L+  K+M P PGAP  D+ S+I P   N R A  G+
Sbjct:    6 RKALFGLSAGVLATTITAFAVPDTAAAQGLFETLFGGLRRAIERP-AMSRSSYSDPYNSYARAADSPPAQRE-------ASGPSRGFCVRTCDGRYFPVQAAGNVSAAEMCHAFCPAAETKIYSGSNIDYATARDGSRYADLDNAFLYRQKMVQGCTCNGRDAYGLAHIKAAEDPTLKPGDVVVNRTGLVAYTGGKNKSADFTPVQSYSGFSKSYREMLSSLKLMQPNPGAPP-DVVSSI-PSASNSRSAQLGR 249          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: A0A1Q4DLW8_9HYPH (Uncharacterized protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DLW8_9HYPH)

HSP 1 Score: 203 bits (516), Expect = 3.660e-61
Identity = 121/260 (46.54%), Postives = 156/260 (60.00%), Query Frame = 1
Query:   88 LSLGLAAIW--LPHPASA-GFFDRLFGDVRRAVEGPRAPAAAPFV---------DPFTSLANHFNPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGMSNNAANFTPIENYARLSKTTREKLAETKVMG--PAPGAPASDITSAITPVND-NLRDASRGQVQFAR 822
            +++G AA+   +  PA+A G F+ LFG + RA+ G   P +AP           DP T   +      R   R     +GPS+ FCVRTCDG +FPVQ   G+SAA +C SFCPASETKVF GSNID A A DG RY DL NAF+YR+ +V  CTCNGK   GLA + A +DPTLRPGDIVAT  G  AFT   +  A FTP++  AR++K+ RE LA TK+      P     D T++I   ND + R + R +++ AR
Sbjct:    1 MAIGSAAMTGAMTGPANAQGLFEALFGGISRAIRGEARPVSAPQAYAPERGYDRDPVTRFFDDLT-GQRSGQRVAAAPSGPSRGFCVRTCDGSYFPVQSRPGMSAAEACSSFCPASETKVFSGSNIDYAVARDGQRYTDLQNAFVYRQKLVDGCTCNGKRTGGLAAIPAQTDPTLRPGDIVATAEGFKAFTPNRHAQAEFTPVD-LARVNKSVRETLASTKIAPNHTEPAVEDGDTTASIG--NDADARVSLRSKIEPAR 256          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: D6V4T1_9BRAD (Uncharacterized protein n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=D6V4T1_9BRAD)

HSP 1 Score: 199 bits (505), Expect = 1.870e-59
Identity = 112/216 (51.85%), Postives = 134/216 (62.04%), Query Frame = 1
Query:   79 AAVLSLGLAAIWLPHPASAGFFDRLFGDVRRAVEGPRAPAAAPFVDPFTSLANHFNPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGMS---NNAANFTPIENYARLSKTTREKLAETKV 717
            AA+L+L L A+  P PASAGFFD LFG       G RAP AA    P        NP D         S+G S ++CVRTCDG +FP+   AG++ A  C+SFCPAS TKV+ G NIDTA   +G RYADLP+AF YRKA+ A CTCNG+ P GLA +D + D TLRPGDIVAT  GL A+ G+S      A FTP+ NY  L+   R KL E KV
Sbjct:   12 AALLALSLLAL-TPRPASAGFFDFLFG-------GDRAPRAAQPSSPTPQTDFFGNPIDPGPTAVAPVSSGRSASYCVRTCDGKYFPLSSHAGMTPAQMCQSFCPASATKVYFGGNIDTALGPNGERYADLPHAFAYRKALKADCTCNGRDPAGLAPIDLSLDTTLRPGDIVATTDGLVAYKGVSPINGQTAEFTPVANYPGLTPELRAKLGEMKV 219          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: A0A380W3S8_AFIFE (Protein of uncharacterized function (DUF2865) n=1 Tax=Afipia felis TaxID=1035 RepID=A0A380W3S8_AFIFE)

HSP 1 Score: 192 bits (488), Expect = 6.750e-57
Identity = 109/217 (50.23%), Postives = 135/217 (62.21%), Query Frame = 1
Query:   82 AVLSLGLAAIWLPHPASAGFFDRLFGDVRRAVEGPRAPAAAPFVDPFTSLANHF--NPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGMS---NNAANFTPIENYARLSKTTREKLAETKV 717
            A+L++ L A+  P PASAGFFD LFG       G RAP A     P  +    F  NP D         S+G S ++CVRTCDG +FP+   AG++ A  C+SFCPAS TK++ GSNID+A   +G RYADLP+AF YRKA+ A CTCNG+ P GLA +D + D TLRPGDIVAT  GL A+ G+S      A FTP+ NY  L+   R KL E KV
Sbjct:   13 ALLAVSLLAL-TPRPASAGFFDFLFG-------GDRAPRAT--QSPTQTQQTDFFGNPIDPGPTSVAPVSSGRSASYCVRTCDGKYFPLSARAGMTPAQMCQSFCPASTTKIYFGSNIDSALGPNGERYADLPHAFAYRKALKADCTCNGRDPAGLAPIDLSLDTTLRPGDIVATTDGLVAYKGVSPINGQTAEFTPVANYPGLTPELRAKLGEMKV 219          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: A0A257KUL8_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium PARB1 TaxID=2015576 RepID=A0A257KUL8_9BRAD)

HSP 1 Score: 187 bits (475), Expect = 1.180e-54
Identity = 108/235 (45.96%), Postives = 137/235 (58.30%), Query Frame = 1
Query:   79 AAVLSLGLAAIWLPHPASA-GFFDRLFGDVRRAVEGPRAPAAAPFVDPFTSLANHFNPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGM---SNNAANFTPIENYARLSKTTREKLAETKVMGPAPGAPASDITSAITP 771
            AA + L       P  ASA GFFD LFG  +   +  R    AP  D F+       P ++ Q +   G  G   AFCVRTCDG +FP+ G  G S A  C++FCPAS TKV  GS+ID AT++ G RYADLPNAF YRK++ A CTCNG+ P GLA +D   D +LRPGD+VAT +GL AF+G+   +N AA FTP+ +Y  L+   R +L E KV   A      +   A TP
Sbjct:   29 AAAIGLAACVALPPQAASAQGFFDFLFGGGQPQKQQQRRGGPAPQQDFFSDPFGLNTPQEQPQPQRSAGYGGSGPAFCVRTCDGKYFPL-GRGGASPAQMCQAFCPASPTKVMFGSSIDYATSSAGERYADLPNAFAYRKSLKADCTCNGRDPAGLAPIDLTLDTSLRPGDVVATTNGLVAFSGVRTGNNQAAEFTPVSSYPGLTSDVRARLGEMKVAPVAAEMITDEAPMAETP 262          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: A0A1Q3VX62_9BRAD (Uncharacterized protein n=1 Tax=Afipia sp. 64-13 TaxID=1895701 RepID=A0A1Q3VX62_9BRAD)

HSP 1 Score: 184 bits (467), Expect = 5.040e-54
Identity = 111/235 (47.23%), Postives = 142/235 (60.43%), Query Frame = 1
Query:   79 AAVLSLGLAAIWLPHPASAGFFDRLFGDVRRAVEGPRAPAAAPFVDPFTSLANHFNPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGM---SNNAANFTPIENYARLSKTTREKLAETKVMGPAPG-APAS--DITSAI 765
            A VL+L ++A   PH ASAGF D LFGD  R      APA A   +PF+ L     P+          S+G   A+CVRTCDG +FP+      + A  C+SFCPAS TKVF G +I+ AT ++G RY+D+PNAF YRKA+ A CTCNG+ P GLA +D + D TLRPGD+VAT SGL A++G+   +   A F P+ NY  L+   R KL E KV       APAS  DIT ++
Sbjct:    3 ALVLALPISAA--PHVASAGFLDFLFGDQPRNT----APAPAQPSNPFSGLFGDDAPAPAPP----PVSSGRGAAYCVRTCDGKYFPLTPQPSATHAQMCQSFCPASPTKVFFGGSIEGATGSNGERYSDMPNAFAYRKALKAGCTCNGRDPAGLASVDLSLDTTLRPGDVVATSSGLVAYSGVRSGNGQTAEFIPVANYPGLTADVRAKLGEMKVTPVTVDVAPASSRDITGSL 227          
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Match: A0A4Q5PM32_9BRAD (DUF2865 domain-containing protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A4Q5PM32_9BRAD)

HSP 1 Score: 183 bits (465), Expect = 2.720e-53
Identity = 112/245 (45.71%), Postives = 147/245 (60.00%), Query Frame = 1
Query:   88 LSLGLAAIWLPHPASA-GFFDRLFGDVRRAVEGPRAPAAAP-----FVDPFTSLANHFNPSDREQLRADTGSTGPSKAFCVRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGRYADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSGLAAFTGM---SNNAANFTPIENYARLSKTTREKLAETKVMGPAPGAPAS-DITSAITPVNDNLRD 792
            +SL     W P  ASA GFFD LF   +   + P+   + P     F DPF    N    +   Q  A++G  GP  AFCVRTCDG +FP+ G  G S A  C++FCPAS TKV  GS+ID+A+++ G RYADLPNAF YRKA+ A CTCNG+ P GLA +D A D +LRPGD+VAT +GL AF+G+   +N A  FTP+ +Y  L+   R +L E KV      AP S ++ +   P+ D  R+
Sbjct:   20 VSLATIVAWTPQIASAQGFFDFLFNGGQPQKQQPQRRGSPPPQNDFFSDPFG--LNTPAEAPPPQRSANSGGYGP--AFCVRTCDGKYFPL-GRGGASPAQMCQAFCPASPTKVVFGSSIDSASSSTGERYADLPNAFAYRKALKADCTCNGRDPAGLAPIDLALDTSLRPGDVVATTNGLVAFSGVRTGNNQAPEFTPVSSYPGLTSDVRARLGEMKV------APVSAEMITDEAPMADTPRE 253          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12982.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A371BAL8_9HYPH3.850e-9055.98DUF2865 domain-containing protein n=2 Tax=Pseudola... [more]
UPI0010BF57B45.260e-8555.65DUF2865 domain-containing protein n=1 Tax=Pseudola... [more]
A0A0Q7TIX6_9HYPH5.620e-8555.08Uncharacterized protein n=1 Tax=Pseudolabrys sp. R... [more]
A0A345ZYA7_9HYPH2.200e-7549.61DUF2865 domain-containing protein n=1 Tax=Pseudola... [more]
A0A1Q4DLW8_9HYPH3.660e-6146.54Uncharacterized protein n=1 Tax=Rhizobiales bacter... [more]
D6V4T1_9BRAD1.870e-5951.85Uncharacterized protein n=3 Tax=Bradyrhizobiaceae ... [more]
A0A380W3S8_AFIFE6.750e-5750.23Protein of uncharacterized function (DUF2865) n=1 ... [more]
A0A257KUL8_9BRAD1.180e-5445.96Uncharacterized protein n=1 Tax=Bradyrhizobiaceae ... [more]
A0A1Q3VX62_9BRAD5.040e-5447.23Uncharacterized protein n=1 Tax=Afipia sp. 64-13 T... [more]
A0A4Q5PM32_9BRAD2.720e-5345.71DUF2865 domain-containing protein n=1 Tax=Bradyrhi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12982contigP-wetherbeei_contig12982:86..910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog666684.AfiDRAFT_0948
PFAMsDUF2865
Model size825
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.78e-60
EggNOG OGs2CKRE@1|root,34B8T@2|Bacteria,1MX6I@1224|Proteobacteria,2TSDC@28211|Alphaproteobacteria,3JUEU@41294|Bradyrhizobiaceae
DescriptionProtein of unknown function (DUF2865)
Cds size816
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185969.1155615-CDS-P-wetherbeei_contig12982:85..9011683185969.1155615-CDS-P-wetherbeei_contig12982:85..901Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12982 86..901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185969.1257584-UTR-P-wetherbeei_contig12982:901..9101683185969.1257584-UTR-P-wetherbeei_contig12982:901..910Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12982 902..910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12982.1.1prot_P-wetherbeei_contig12982.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12982 86..901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12982.1.1

>prot_P-wetherbeei_contig12982.1.1 ID=prot_P-wetherbeei_contig12982.1.1|Name=mRNA_P-wetherbeei_contig12982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=272bp
MHGAKSGGRAMAILGQKSKFCLAAAVLSLGLAAIWLPHPASAGFFDRLFG
DVRRAVEGPRAPAAAPFVDPFTSLANHFNPSDREQLRADTGSTGPSKAFC
VRTCDGHFFPVQGTAGISAAASCRSFCPASETKVFGGSNIDTATANDGGR
YADLPNAFLYRKAMVASCTCNGKSPFGLARLDAASDPTLRPGDIVATKSG
LAAFTGMSNNAANFTPIENYARLSKTTREKLAETKVMGPAPGAPASDITS
AITPVNDNLRDASRGQVQFAR*
back to top

mRNA from alignment at P-wetherbeei_contig12982:86..910-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12982.1.1 ID=mRNA_P-wetherbeei_contig12982.1.1|Name=mRNA_P-wetherbeei_contig12982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig12982:86..910- (Phaeothamnion wetherbeei SAG_119_79)
CGCAAATCCATGCACGGTGCGAAGTCAGGCGGGCGTGCGATGGCTATCCT TGGCCAGAAATCGAAATTTTGCCTCGCCGCGGCGGTTTTGAGCCTCGGTT TGGCAGCGATCTGGCTGCCGCACCCGGCCTCGGCGGGATTTTTCGACCGG TTGTTCGGCGATGTGCGCCGCGCCGTCGAAGGCCCTCGCGCTCCTGCGGC CGCGCCCTTCGTCGACCCCTTCACCAGTCTGGCCAATCATTTCAATCCGT CCGACCGCGAGCAGTTGCGCGCCGATACCGGCTCCACCGGCCCGTCGAAG GCATTCTGCGTGCGCACCTGCGACGGTCATTTCTTCCCGGTGCAGGGCAC CGCCGGCATCAGCGCGGCGGCGAGCTGCCGCTCGTTCTGCCCAGCCAGCG AAACCAAGGTTTTCGGCGGCAGCAACATCGACACCGCGACGGCGAATGAC GGCGGCCGCTACGCCGACCTGCCGAACGCCTTTCTGTATCGCAAGGCGAT GGTCGCCAGTTGCACCTGCAACGGCAAGAGCCCCTTCGGTCTGGCGCGTC TCGACGCCGCCAGCGATCCGACCTTGCGCCCCGGCGACATCGTCGCCACC AAAAGCGGCTTGGCCGCCTTTACCGGCATGAGCAACAACGCCGCCAACTT CACGCCGATCGAGAATTATGCGCGCCTGTCGAAGACGACGCGCGAGAAGC TGGCCGAGACCAAGGTCATGGGCCCGGCGCCGGGCGCCCCGGCGTCCGAC ATCACGTCGGCGATCACGCCGGTCAACGACAACCTGCGCGACGCCAGCCG CGGCCAGGTTCAGTTCGCCAGATAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12982:86..910-

>mRNA_P-wetherbeei_contig12982.1.1 ID=mRNA_P-wetherbeei_contig12982.1.1|Name=mRNA_P-wetherbeei_contig12982.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=816bp|location=Sequence derived from alignment at P-wetherbeei_contig12982:86..910- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGTGCGAAGTCAGGCGGGCGTGCGATGGCTATCCTTGGCCAGAA
ATCGAAATTTTGCCTCGCCGCGGCGGTTTTGAGCCTCGGTTTGGCAGCGA
TCTGGCTGCCGCACCCGGCCTCGGCGGGATTTTTCGACCGGTTGTTCGGC
GATGTGCGCCGCGCCGTCGAAGGCCCTCGCGCTCCTGCGGCCGCGCCCTT
CGTCGACCCCTTCACCAGTCTGGCCAATCATTTCAATCCGTCCGACCGCG
AGCAGTTGCGCGCCGATACCGGCTCCACCGGCCCGTCGAAGGCATTCTGC
GTGCGCACCTGCGACGGTCATTTCTTCCCGGTGCAGGGCACCGCCGGCAT
CAGCGCGGCGGCGAGCTGCCGCTCGTTCTGCCCAGCCAGCGAAACCAAGG
TTTTCGGCGGCAGCAACATCGACACCGCGACGGCGAATGACGGCGGCCGC
TACGCCGACCTGCCGAACGCCTTTCTGTATCGCAAGGCGATGGTCGCCAG
TTGCACCTGCAACGGCAAGAGCCCCTTCGGTCTGGCGCGTCTCGACGCCG
CCAGCGATCCGACCTTGCGCCCCGGCGACATCGTCGCCACCAAAAGCGGC
TTGGCCGCCTTTACCGGCATGAGCAACAACGCCGCCAACTTCACGCCGAT
CGAGAATTATGCGCGCCTGTCGAAGACGACGCGCGAGAAGCTGGCCGAGA
CCAAGGTCATGGGCCCGGCGCCGGGCGCCCCGGCGTCCGACATCACGTCG
GCGATCACGCCGGTCAACGACAACCTGCGCGACGCCAGCCGCGGCCAGGT
TCAGTTCGCCAGATAG
back to top