mRNA_P-wetherbeei_contig12976.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12976.1.1
Unique NamemRNA_P-wetherbeei_contig12976.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12976.1.1 vs. uniprot
Match: A0A2D4CHK2_PYTIN (Tubulin-tyrosine ligase family (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CHK2_PYTIN)

HSP 1 Score: 58.9 bits (141), Expect = 1.680e-9
Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 1 
Query:   25 LVNVLSRRLDRVSDGQP-----NASLRHHRHASRAGKSALDVDLDSILLGAVPRRYGEMPCDPGGYLRLSPGTALYRRALRFR 258
            L +VL RR       +      N + RH R A       ++ DL +ILLG VPR+YGE+P   G Y RL P T LY + ++ +
Sbjct:    1 LADVLRRRFHEAESERRRVHSVNHNARHPREAEELAAKQMNEDLAAILLGQVPRQYGELPAHLGSYSRLCPHTTLYNQLVKLK 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12976.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2D4CHK2_PYTIN1.680e-937.35Tubulin-tyrosine ligase family (Fragment) n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12976contigP-wetherbeei_contig12976:244..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog42099.EPrPV00000022370
PFAMsTTL
Model size258
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.02e-12
EggNOG OGsKOG2157@1|root,KOG2157@2759|Eukaryota,1ME8B@121069|Pythiales
DescriptionSource PGD
Cds size258
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.8926334-CDS-P-wetherbeei_contig12976:243..3581683185968.8926334-CDS-P-wetherbeei_contig12976:243..358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12976 244..358 +
1683185968.9023368-CDS-P-wetherbeei_contig12976:541..6841683185968.9023368-CDS-P-wetherbeei_contig12976:541..684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12976 542..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12976.1.1prot_P-wetherbeei_contig12976.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12976 244..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12976.1.1

>prot_P-wetherbeei_contig12976.1.1 ID=prot_P-wetherbeei_contig12976.1.1|Name=mRNA_P-wetherbeei_contig12976.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
PERFCRDKLVNVLSRRLDRVSDGQPNASLRHHRHASRAGKSALDVDLDSI
LLGAVPRRYGEMPCDPGGYLRLSPGTALYRRALRFR
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mRNA from alignment at P-wetherbeei_contig12976:244..684+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12976.1.1 ID=mRNA_P-wetherbeei_contig12976.1.1|Name=mRNA_P-wetherbeei_contig12976.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig12976:244..684+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGAACGATTCTGCAGGGACAAATTGGTCAACGTCCTCAGCCGCCGTCT
CGACCGCGTCAGCGACGGCCAGCCCAACGCATCATTGCGCCACCACCGTC
ACGCCTCACGGGCTGGTTCCGGCGGTGCTGGCAGCGGCAGCGGCGGCGAC
TGCGGTGGCGGTGGCGCTAATTGCGGCGCCGGCGCCAGCACCAGCGGTGA
CGGTGGAGGCGTTAACGGTGCCGTAAGCGGCGGTGGGGGCAGCGGCGGCA
GCGGTGGCAGCGGCGGTGGCGGCGGCGGCGGAGGCGGCCACAGAAAAGGC
AAGTCGGCGTTGGACGTCGACTTGGATTCCATTCTGCTGGGCGCCGTGCC
GCGCCGCTACGGCGAGATGCCGTGCGACCCCGGCGGCTACCTTCGGCTCA
GTCCGGGCACGGCCCTGTACCGACGCGCGCTTCGTTTCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12976:244..684+

>mRNA_P-wetherbeei_contig12976.1.1 ID=mRNA_P-wetherbeei_contig12976.1.1|Name=mRNA_P-wetherbeei_contig12976.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig12976:244..684+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGAACGATTCTGCAGGGACAAATTGGTCAACGTCCTCAGCCGCCGTCT
CGACCGCGTCAGCGACGGCCAGCCCAACGCATCATTGCGCCACCACCGTC
ACGCCTCACGGGCTGGCAAGTCGGCGTTGGACGTCGACTTGGATTCCATT
CTGCTGGGCGCCGTGCCGCGCCGCTACGGCGAGATGCCGTGCGACCCCGG
CGGCTACCTTCGGCTCAGTCCGGGCACGGCCCTGTACCGACGCGCGCTTC
GTTTCCGG
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