mRNA_P-wetherbeei_contig12970.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12970.2.1
Unique NamemRNA_P-wetherbeei_contig12970.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12970.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12970contigP-wetherbeei_contig12970:781..1841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size746
Hectar predicted targeting categoryother localisation
Exons2
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.6708245-CDS-P-wetherbeei_contig12970:780..10571683185968.6708245-CDS-P-wetherbeei_contig12970:780..1057Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12970 781..1057 -
1683185968.6808174-CDS-P-wetherbeei_contig12970:1374..15291683185968.6808174-CDS-P-wetherbeei_contig12970:1374..1529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12970 1375..1529 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.6986194-UTR-P-wetherbeei_contig12970:1529..18411683185968.6986194-UTR-P-wetherbeei_contig12970:1529..1841Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12970 1530..1841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12970.2.1prot_P-wetherbeei_contig12970.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12970 781..1529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12970.2.1

>prot_P-wetherbeei_contig12970.2.1 ID=prot_P-wetherbeei_contig12970.2.1|Name=mRNA_P-wetherbeei_contig12970.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MGTPAPDLLTGARGGGCRTTGWSRRQARARCTASSTLRPGFSSSSASSSS
SWAFCASTGGTEKRLRTPPQPPPPPRKGRGCEIRANKAGGSGAPKAGSGR
PAAGTSAASAVFQSRIDRLQWRLVAMPPDRGRLGGCWSAAFSKS
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mRNA from alignment at P-wetherbeei_contig12970:781..1841-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12970.2.1 ID=mRNA_P-wetherbeei_contig12970.2.1|Name=mRNA_P-wetherbeei_contig12970.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1061bp|location=Sequence derived from alignment at P-wetherbeei_contig12970:781..1841- (Phaeothamnion wetherbeei SAG_119_79)
GTGTCGGGATACATTGTGATGCTGTACGTGATTGCGGCATGCCTTGCAGC
CATGCTCGTCGAGGCCGGACTGACCGCGCTCGGCAGGACGTCCGTCCTCG
CCACCTCGTGGGTCGCCCGCGGCCTTTTCTACACCTTCGTCGGCGTCATC
ACGCTCGACCAGGTTAGGTTCAGGGGTTTTATTATTTGCCAAAGTACACT
ACTTACTGCATGCTAGCAAAAACCTGAGCCTGCAACTATCAAACATTTCA
AGACCGTAGAGGAAGAGCTGGCTGTGCTCTTCTTCTCGCTTTCGCCGTTC
TCGTTGGCCCCAATGGGAACTCCGGCACCTGATCTGCTGACGGGAGCACG
CGGCGGAGGCTGCAGGACCACTGGCTGGAGCCGAAGACAGGCGCGAGCGC
GGTGCACCGCTTCGTCTACGCTGCGGCCTGGATTTTCATCATCGTCGGCA
TCCTCTTCTTCCTCATGGTCAGTGAATTGGTGGGCCTGTGGGGCCGGTTG
AGCAGCCGACCGGTCGATGCCTGTGCACGTGCGCTGTCCTCTATCCTCTG
ATTTTCTTTGTCGTCTGCTCGAAAGGTCTGTCGTGCTTTCCGGACTGGCG
GTCGGGTTCCTGCCTGGAGCGATACAGCGATAGCTCGCTATTGGTTGCTG
CTCTCTTTGGGGCTGCCGAATGGTCTTGTTCTTCGTGCTAAAGTTCTAAC
CCATTTCTCGTCGCATATTTTGCTAGGTCTTTGCTTTCGTCCATTTCACG
CCTGACAACCCTTTGGAACCTGCCTTCCTTTCAGGGCATTTTGTGCGTCG
ACCGGAGGTACAGAAAAGAGATTGAGAACACCGCCACAACCACCACCGCC
CCCGCGCAAGGGACGCGGGTGTGAAATCCGTGCGAACAAAGCGGGCGGGA
GTGGCGCTCCGAAAGCTGGCAGCGGCAGGCCGGCGGCGGGCACGTCGGCG
GCATCAGCAGTTTTCCAGTCGAGGATCGATCGGCTGCAATGGCGGCTGGT
GGCAATGCCGCCGGATCGGGGGCGACTTGGTGGATGCTGGTCGGCGGCAT
TCAGCAAAAGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12970:781..1841-

>mRNA_P-wetherbeei_contig12970.2.1 ID=mRNA_P-wetherbeei_contig12970.2.1|Name=mRNA_P-wetherbeei_contig12970.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig12970:781..1841- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAACTCCGGCACCTGATCTGCTGACGGGAGCACGCGGCGGAGGCTG
CAGGACCACTGGCTGGAGCCGAAGACAGGCGCGAGCGCGGTGCACCGCTT
CGTCTACGCTGCGGCCTGGATTTTCATCATCGTCGGCATCCTCTTCTTCC
TCATGGGCATTTTGTGCGTCGACCGGAGGTACAGAAAAGAGATTGAGAAC
ACCGCCACAACCACCACCGCCCCCGCGCAAGGGACGCGGGTGTGAAATCC
GTGCGAACAAAGCGGGCGGGAGTGGCGCTCCGAAAGCTGGCAGCGGCAGG
CCGGCGGCGGGCACGTCGGCGGCATCAGCAGTTTTCCAGTCGAGGATCGA
TCGGCTGCAATGGCGGCTGGTGGCAATGCCGCCGGATCGGGGGCGACTTG
GTGGATGCTGGTCGGCGGCATTCAGCAAAAGC
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