mRNA_P-wetherbeei_contig12967.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12967.1.1
Unique NamemRNA_P-wetherbeei_contig12967.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12967.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12967contigP-wetherbeei_contig12967:225..1000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size776
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_001180.1
Cds size636
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.5164514-UTR-P-wetherbeei_contig12967:224..2771683185968.5164514-UTR-P-wetherbeei_contig12967:224..277Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12967 225..277 +
1683185968.5349526-UTR-P-wetherbeei_contig12967:913..10001683185968.5349526-UTR-P-wetherbeei_contig12967:913..1000Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12967 914..1000 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.5262532-CDS-P-wetherbeei_contig12967:277..9131683185968.5262532-CDS-P-wetherbeei_contig12967:277..913Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12967 278..913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12967.1.1prot_P-wetherbeei_contig12967.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12967 278..913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12967.1.1

>prot_P-wetherbeei_contig12967.1.1 ID=prot_P-wetherbeei_contig12967.1.1|Name=mRNA_P-wetherbeei_contig12967.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
MPARPKYFPALMYRMASTLQPVPVRLQVALMPAPPPPQSPATDAAGDAGK
TSVAVPAAAAAGAVRLAIRATANPSLHRPLVSVVVVAKAPLFSENAADGG
EIGPPATRPPALWRAEQRLLEWRLPDGLRPGQKVTFEATFPLAFAPAQGA
LPPPPPVQLKASSPDAQLSAVDFRLAPAPLPPSTSAVAGDDGLIDFVGCT
VRRFTVTCTQR*
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mRNA from alignment at P-wetherbeei_contig12967:225..1000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12967.1.1 ID=mRNA_P-wetherbeei_contig12967.1.1|Name=mRNA_P-wetherbeei_contig12967.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=776bp|location=Sequence derived from alignment at P-wetherbeei_contig12967:225..1000+ (Phaeothamnion wetherbeei SAG_119_79)
TCTATTTGGTCGACGGAACCCGCGAATGGGACGGACCGCTGGGGCCCGAC
GGCATGCCGGCGCGGCCGAAGTATTTTCCCGCGCTCATGTACCGGATGGC
GTCGACGCTCCAGCCGGTTCCCGTCCGCCTGCAAGTCGCTCTCATGCCCG
CCCCGCCGCCGCCGCAGTCGCCAGCAACCGACGCTGCTGGCGACGCGGGC
AAGACCTCTGTGGCGGTGCCGGCTGCCGCTGCCGCCGGGGCTGTGCGGCT
GGCGATCCGTGCTACGGCAAACCCGTCGCTCCACCGGCCGCTTGTGTCAG
TGGTGGTGGTGGCCAAGGCGCCGCTGTTCAGCGAGAACGCGGCGGACGGC
GGCGAGATCGGCCCGCCGGCGACGCGGCCGCCGGCGCTGTGGCGTGCGGA
GCAGCGGCTGCTGGAGTGGCGGCTGCCGGACGGGCTGCGGCCGGGCCAAA
AGGTGACGTTCGAGGCGACCTTCCCGCTGGCGTTTGCGCCGGCGCAGGGG
GCGTTGCCGCCACCGCCGCCCGTGCAGCTCAAGGCGTCGAGCCCTGATGC
ACAGCTGTCGGCGGTCGACTTTCGGCTGGCGCCGGCGCCCCTGCCGCCGT
CGACATCGGCGGTGGCCGGCGACGATGGCTTGATTGACTTTGTGGGGTGC
ACCGTGCGGCGCTTCACGGTGACGTGCACGCAGCGGTGATGCGAAGAATA
TTGATACGCGCCACATGTGGCAGCGACGAGGGGGATAGCCTACCAGTATG
TAATCGACAAGAGTGATTTGAAGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12967:225..1000+

>mRNA_P-wetherbeei_contig12967.1.1 ID=mRNA_P-wetherbeei_contig12967.1.1|Name=mRNA_P-wetherbeei_contig12967.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig12967:225..1000+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCGCGGCCGAAGTATTTTCCCGCGCTCATGTACCGGATGGCGTC
GACGCTCCAGCCGGTTCCCGTCCGCCTGCAAGTCGCTCTCATGCCCGCCC
CGCCGCCGCCGCAGTCGCCAGCAACCGACGCTGCTGGCGACGCGGGCAAG
ACCTCTGTGGCGGTGCCGGCTGCCGCTGCCGCCGGGGCTGTGCGGCTGGC
GATCCGTGCTACGGCAAACCCGTCGCTCCACCGGCCGCTTGTGTCAGTGG
TGGTGGTGGCCAAGGCGCCGCTGTTCAGCGAGAACGCGGCGGACGGCGGC
GAGATCGGCCCGCCGGCGACGCGGCCGCCGGCGCTGTGGCGTGCGGAGCA
GCGGCTGCTGGAGTGGCGGCTGCCGGACGGGCTGCGGCCGGGCCAAAAGG
TGACGTTCGAGGCGACCTTCCCGCTGGCGTTTGCGCCGGCGCAGGGGGCG
TTGCCGCCACCGCCGCCCGTGCAGCTCAAGGCGTCGAGCCCTGATGCACA
GCTGTCGGCGGTCGACTTTCGGCTGGCGCCGGCGCCCCTGCCGCCGTCGA
CATCGGCGGTGGCCGGCGACGATGGCTTGATTGACTTTGTGGGGTGCACC
GTGCGGCGCTTCACGGTGACGTGCACGCAGCGGTGA
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