mRNA_P-wetherbeei_contig12964.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12964.1.1
Unique NamemRNA_P-wetherbeei_contig12964.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12964.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12964contigP-wetherbeei_contig12964:1..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1355374.JARU01000001_gene650
PFAMsSel1
Model size432
Max annot lvl29547|Epsilonproteobacteria
KEGG koko:K07126
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000456
EggNOG OGsCOG0790@1|root,COG0790@2|Bacteria,1MWPA@1224|Proteobacteria,42M5H@68525|delta/epsilon subdivisions,2YMZE@29547|Epsilonproteobacteria
DescriptionPfam matches to PF08238.7 Sel1, and to PF08238.7 Sel1, and to PF08238.7 Sel1, and to PF08238.7 Sel1
Cds size417
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.3928876-UTR-P-wetherbeei_contig12964:0..151683185968.3928876-UTR-P-wetherbeei_contig12964:0..15Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12964 1..15 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185968.4032512-CDS-P-wetherbeei_contig12964:15..4321683185968.4032512-CDS-P-wetherbeei_contig12964:15..432Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12964 16..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12964.1.1prot_P-wetherbeei_contig12964.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12964 16..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12964.1.1

>prot_P-wetherbeei_contig12964.1.1 ID=prot_P-wetherbeei_contig12964.1.1|Name=mRNA_P-wetherbeei_contig12964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MYLEGLGVPQDYAKALELFELSAKQGFAVAQNSLGFMYLKGLGVPLDFTK
ARFYLEKAQAQGNAQAYSSLGYMYQYGMGVEQDFHKARELFEKAMKKGLA
EAFYNLGYMYHNGLGLKKDYAKARQLYESAAARGDEDAQ
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mRNA from alignment at P-wetherbeei_contig12964:1..432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12964.1.1 ID=mRNA_P-wetherbeei_contig12964.1.1|Name=mRNA_P-wetherbeei_contig12964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig12964:1..432+ (Phaeothamnion wetherbeei SAG_119_79)
AACGGGCTCGGGTTCATGTACCTCGAGGGGCTGGGCGTGCCCCAGGACTA
CGCGAAGGCCCTCGAGCTCTTCGAGCTGTCCGCCAAGCAGGGGTTCGCGG
TCGCCCAGAACAGCCTCGGGTTCATGTACCTCAAGGGGCTGGGCGTGCCT
CTGGACTTCACCAAGGCGCGGTTCTACCTGGAGAAGGCCCAGGCCCAGGG
GAACGCACAGGCCTACAGCTCGCTCGGGTACATGTACCAGTACGGGATGG
GCGTCGAGCAGGACTTCCACAAGGCGCGCGAGCTGTTCGAGAAGGCCATG
AAGAAGGGGCTGGCGGAGGCGTTCTACAACCTCGGGTACATGTACCACAA
CGGGCTGGGCCTGAAGAAGGACTACGCCAAGGCGCGCCAGCTCTACGAGT
CGGCGGCGGCCCGGGGCGACGAGGACGCGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12964:1..432+

>mRNA_P-wetherbeei_contig12964.1.1 ID=mRNA_P-wetherbeei_contig12964.1.1|Name=mRNA_P-wetherbeei_contig12964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig12964:1..432+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCTCGAGGGGCTGGGCGTGCCCCAGGACTACGCGAAGGCCCTCGA
GCTCTTCGAGCTGTCCGCCAAGCAGGGGTTCGCGGTCGCCCAGAACAGCC
TCGGGTTCATGTACCTCAAGGGGCTGGGCGTGCCTCTGGACTTCACCAAG
GCGCGGTTCTACCTGGAGAAGGCCCAGGCCCAGGGGAACGCACAGGCCTA
CAGCTCGCTCGGGTACATGTACCAGTACGGGATGGGCGTCGAGCAGGACT
TCCACAAGGCGCGCGAGCTGTTCGAGAAGGCCATGAAGAAGGGGCTGGCG
GAGGCGTTCTACAACCTCGGGTACATGTACCACAACGGGCTGGGCCTGAA
GAAGGACTACGCCAAGGCGCGCCAGCTCTACGAGTCGGCGGCGGCCCGGG
GCGACGAGGACGCGCAG
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