mRNA_P-wetherbeei_contig12928.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12928.1.1
Unique NamemRNA_P-wetherbeei_contig12928.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A127EV64_9HYPH (RDD domain-containing protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127EV64_9HYPH)

HSP 1 Score: 278 bits (711), Expect = 1.900e-93
Identity = 132/178 (74.16%), Postives = 157/178 (88.20%), Query Frame = 1
Query:    1 MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALRGSRRP 534
            M+  EPKRIGVS E+KPHAYDP+TNPELFEGV+ARR+VAFLIDF+ILS+PVVF++MFIFV+G+VT GLGF  YGLLWP MV+WA+ YYG+TLG   SAT+GMR+MD+EMRTWYG+PAYFVLGAVHA+VFWIT+S +TP VL+V  FNERRR LHD LVGT+VINN ER++ALR   RP
Sbjct:    1 MAASEPKRIGVSFEVKPHAYDPVTNPELFEGVVARRIVAFLIDFLILSLPVVFVSMFIFVIGIVTFGLGFFLYGLLWPGMVVWAIVYYGMTLGSASSATIGMRIMDIEMRTWYGAPAYFVLGAVHAVVFWITISAITPLVLVVCLFNERRRCLHDFLVGTIVINNVERAAALRTLHRP 178          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A537NR43_9PROT (RDD family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NR43_9PROT)

HSP 1 Score: 257 bits (657), Expect = 2.970e-85
Identity = 123/173 (71.10%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALR 519
            MS   P+ IGVSIELKPHAYDP+ NPELFEGVLARR +AFLID  I+S+PV+F A FI ++G VT GLG++ Y LLWPA VIWA++YYG+T GG  SAT+GMR+MDLEMRTWYG+P YFVLGAVHA+V+W+TVS LTPF+LLVAFFNER+R LHD+LVGTVVIN ++R+  LR
Sbjct:    1 MSDSRPRNIGVSIELKPHAYDPVVNPELFEGVLARRCMAFLIDITIISIPVLFAAFFILILGFVTFGLGWVLYALLWPAAVIWAISYYGLTFGGAASATIGMRVMDLEMRTWYGAPCYFVLGAVHAVVYWVTVSFLTPFILLVAFFNERKRLLHDMLVGTVVINKSDRAQGLR 173          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A537PJY6_9PROT (RDD family protein n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PJY6_9PROT)

HSP 1 Score: 257 bits (656), Expect = 4.830e-85
Identity = 124/178 (69.66%), Postives = 152/178 (85.39%), Query Frame = 1
Query:    1 MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALRGSRRP 534
            MS G P++IG+SIE+KPHAYDPI NPELFEGVLARR +AF+ID +I++VPV+F A FIF+VG+VTLGLG++ Y LL P  VIWA+ YYG+T G P SAT+GMR+MD+EMRTWYG+PAYFVLGAVHA+V+W+T+S LTP +LLVAFFN RRR LHD+LVGTVVIN   R+ ALR + RP
Sbjct:    1 MSDGGPRKIGLSIEVKPHAYDPIANPELFEGVLARRCIAFVIDVIIIAVPVLFAAAFIFIVGLVTLGLGWILYWLLSPTAVIWAICYYGLTFGSPASATIGMRVMDIEMRTWYGAPAYFVLGAVHAVVYWVTISFLTPLILLVAFFNARRRLLHDLLVGTVVINTGARAQALRRTSRP 178          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A1Q7BR45_9PROT (RDD family protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BR45_9PROT)

HSP 1 Score: 253 bits (645), Expect = 2.360e-83
Identity = 122/177 (68.93%), Postives = 151/177 (85.31%), Query Frame = 1
Query:    1 MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALRGSRR 531
            MS G P++IGVS+E+KPHAYDP+ NPELFEGVLARR +AF+ID VI+++PVVF A FIF+VG+VTLGLG+  Y +L PA VIWA+ YYG+T G P SAT+GMR+MD+EMRTWYG+PAYFVLGAVHAIV+WIT+S LTP +LLVA FN+RRR LHD+LVGT+VIN+  R+  LR + R
Sbjct:    1 MSDGGPRKIGVSVEVKPHAYDPVANPELFEGVLARRCIAFVIDVVIIAIPVVFAAAFIFIVGLVTLGLGWFLYWILSPATVIWAICYYGLTFGSPASATIGMRVMDIEMRTWYGAPAYFVLGAVHAIVYWITISFLTPLILLVALFNQRRRLLHDMLVGTIVINSRARAEVLRRAPR 177          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A1W6ZVZ2_9HYPH (RDD family protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZVZ2_9HYPH)

HSP 1 Score: 247 bits (631), Expect = 2.520e-81
Identity = 124/174 (71.26%), Postives = 146/174 (83.91%), Query Frame = 1
Query:    7 TGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALRGSR 528
            T + +R+GVS +LKPHAYDP TNPELF+GV ARRV+AFLID +IL++P+V LA+F F VG+VTLG GF+ +GL+    V+WAL YYG TLGGPRSATLGMR MD+EMRTWYGSPAYFVLGAVHAIVFW+TVS+LTP +LLV FFN R R LHD LVGTVVINN  R+ ALR +R
Sbjct:    2 TDDQQRLGVSNDLKPHAYDPETNPELFDGVPARRVIAFLIDLIILAIPLVVLALFFFAVGIVTLGFGFVLFGLMPAIAVVWALFYYGATLGGPRSATLGMRTMDIEMRTWYGSPAYFVLGAVHAIVFWVTVSVLTPLILLVCFFNARGRLLHDFLVGTVVINNPARAGALRPTR 175          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A1Q7BD40_9PROT (RDD family protein n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BD40_9PROT)

HSP 1 Score: 247 bits (631), Expect = 2.700e-81
Identity = 122/177 (68.93%), Postives = 149/177 (84.18%), Query Frame = 1
Query:    1 MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALRGSRR 531
            M+ G P++IGVSIE+KPHAYDPI N ELFEGVLARR +AF+ID VI+++PV+F A+FIF+ G+VTLGLG++ Y LL PA VIWA+ YYG+T G P SAT+GMR MD+EMRTWYG+PAYFVLGAVHAI +W TVS LTP +LLVA FN+RRR LHD+LVGT+VINN  R+ ALR + R
Sbjct:    1 MTEGGPRKIGVSIEVKPHAYDPIANSELFEGVLARRCIAFVIDVVIIAIPVLFAAVFIFIFGLVTLGLGWVLYWLLSPAAVIWAICYYGLTFGSPASATIGMRAMDIEMRTWYGAPAYFVLGAVHAIAYWFTVSFLTPLILLVALFNDRRRLLHDMLVGTIVINNRLRADALRRAPR 177          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A345ZTL2_9HYPH (RDD family protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZTL2_9HYPH)

HSP 1 Score: 246 bits (629), Expect = 4.600e-81
Identity = 120/161 (74.53%), Postives = 145/161 (90.06%), Query Frame = 1
Query:   37 IELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALR 519
            I++KPHAYDPI NPELFEGVLARR+VAF+IDFV++++PVV  AMFIF  G+VTLGLGF  Y LL PA V+WAL Y+G TLG PRSAT+GMR+M+LEMRTWYG+PAYFVLGAVHAIVFW+++S LTPF+LLVAFFN+RRR LHDI++GTVVINN+ER++ LR
Sbjct:    3 IDIKPHAYDPIRNPELFEGVLARRIVAFVIDFVLIAIPVVLAAMFIFAFGLVTLGLGFALYWLLPPATVVWALIYFGATLGSPRSATIGMRVMNLEMRTWYGAPAYFVLGAVHAIVFWVSISALTPFILLVAFFNDRRRLLHDIVLGTVVINNSERAAMLR 163          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A363TMG7_9BRAD (RDD family protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TMG7_9BRAD)

HSP 1 Score: 246 bits (628), Expect = 9.450e-81
Identity = 121/173 (69.94%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALR 519
            M+  EPKRIGVS E+KPH YDP T PELFEGV+ARRV+AF+ID ++++VP+VFLA+FIFV G+VTLGLG+L + L  P  VIWA+ YYG+TLG P SATLGMR+M++EMRTWYG P YF+LGAVHAI+FW+TVS LTP +LLVAFFN RRR LHD+L+GTVVINN  R++ALR
Sbjct:    1 MAESEPKRIGVSFEVKPHVYDPDTQPELFEGVMARRVLAFVIDLLVITVPLVFLAIFIFVFGIVTLGLGWLLFFLFSPIAVIWAVLYYGLTLGSPASATLGMRVMEIEMRTWYGGPCYFLLGAVHAILFWVTVSFLTPLILLVAFFNARRRLLHDLLLGTVVINNELRAAALR 173          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A537LEF3_9PROT (RDD family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537LEF3_9PROT)

HSP 1 Score: 242 bits (618), Expect = 2.750e-79
Identity = 121/178 (67.98%), Postives = 145/178 (81.46%), Query Frame = 1
Query:    1 MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALRGSRRP 534
            MS   PKR G+S+E+K HAYDP   PELFEGV ARRVVAFLID V+++VP++F+A+FIF+ G+VTLGLG+  + L  P  VIWAL YYG+T G P SAT+GMRM+DLEMRTWYG P YFVLGAVHAI FW+T+S LTPFVLLVA FN+RRR LHD+LVGTVVINNA R++ LR +  P
Sbjct:    1 MSDSGPKRTGLSVEVKAHAYDPAVQPELFEGVPARRVVAFLIDVVVIAVPLIFVAIFIFMFGLVTLGLGWFLFFLYGPITVIWALVYYGLTFGSPASATIGMRMVDLEMRTWYGEPCYFVLGAVHAIAFWLTLSFLTPFVLLVALFNDRRRLLHDMLVGTVVINNATRANTLRNASGP 178          
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Match: A0A537PLP1_9PROT (RDD family protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PLP1_9PROT)

HSP 1 Score: 242 bits (618), Expect = 2.840e-79
Identity = 121/173 (69.94%), Postives = 143/173 (82.66%), Query Frame = 1
Query:    1 MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVPVVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATLGMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERRRGLHDILVGTVVINNAERSSALR 519
            M   +PKR+GVS E+KPHAYDP T+PELFEGVLARRV+AF ID  ++++PVVF  +FIFV G+VT GLG+  Y LL PA VIWAL +YG T G P SAT+GMR+MDLEMRTWYG+P YF+LGAVHAIVFWITVS LTP +LLV  FN+RRR LHD+LVGTVVINN  R++ALR
Sbjct:    1 MPDSDPKRVGVSFEVKPHAYDPATSPELFEGVLARRVLAFFIDVFLIAIPVVFAGLFIFVFGLVTFGLGWALYWLLSPAAVIWALVHYGTTFGSPASATIGMRVMDLEMRTWYGAPMYFLLGAVHAIVFWITVSALTPLILLVGLFNDRRRLLHDMLVGTVVINNEVRANALR 173          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12928.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A127EV64_9HYPH1.900e-9374.16RDD domain-containing protein n=1 Tax=Rhodoplanes ... [more]
A0A537NR43_9PROT2.970e-8571.10RDD family protein n=1 Tax=Alphaproteobacteria bac... [more]
A0A537PJY6_9PROT4.830e-8569.66RDD family protein n=4 Tax=Alphaproteobacteria bac... [more]
A0A1Q7BR45_9PROT2.360e-8368.93RDD family protein n=1 Tax=Alphaproteobacteria bac... [more]
A0A1W6ZVZ2_9HYPH2.520e-8171.26RDD family protein n=1 Tax=Pseudorhodoplanes sinus... [more]
A0A1Q7BD40_9PROT2.700e-8168.93RDD family protein n=2 Tax=unclassified Alphaprote... [more]
A0A345ZTL2_9HYPH4.600e-8174.53RDD family protein n=1 Tax=Pseudolabrys taiwanensi... [more]
A0A363TMG7_9BRAD9.450e-8169.94RDD family protein n=1 Tax=Bradyrhizobiaceae bacte... [more]
A0A537LEF3_9PROT2.750e-7967.98RDD family protein n=1 Tax=Alphaproteobacteria bac... [more]
A0A537PLP1_9PROT2.840e-7969.94RDD family protein n=2 Tax=Alphaproteobacteria bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12928contigP-wetherbeei_contig12928:673..1212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog936455.KI421499_gene2243
Preferred nameMA20_36685
PFAMsRDD
Model size540
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.13e-70
EggNOG OGsCOG1714@1|root,COG1714@2|Bacteria,1P9TI@1224|Proteobacteria,2TRIS@28211|Alphaproteobacteria,3JQUB@41294|Bradyrhizobiaceae
DescriptionRDD family
Cds size540
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.8319066-CDS-P-wetherbeei_contig12928:672..12121683185966.8319066-CDS-P-wetherbeei_contig12928:672..1212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12928 673..1212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12928.1.1prot_P-wetherbeei_contig12928.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12928 673..1212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12928.1.1

>prot_P-wetherbeei_contig12928.1.1 ID=prot_P-wetherbeei_contig12928.1.1|Name=mRNA_P-wetherbeei_contig12928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=180bp
MSTGEPKRIGVSIELKPHAYDPITNPELFEGVLARRVVAFLIDFVILSVP
VVFLAMFIFVVGVVTLGLGFLFYGLLWPAMVIWALAYYGITLGGPRSATL
GMRMMDLEMRTWYGSPAYFVLGAVHAIVFWITVSMLTPFVLLVAFFNERR
RGLHDILVGTVVINNAERSSALRGSRRPF*
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mRNA from alignment at P-wetherbeei_contig12928:673..1212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12928.1.1 ID=mRNA_P-wetherbeei_contig12928.1.1|Name=mRNA_P-wetherbeei_contig12928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig12928:673..1212+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCACGGGCGAACCCAAGCGGATCGGCGTGTCGATCGAACTCAAGCC GCATGCCTACGATCCGATCACCAATCCGGAGCTGTTCGAGGGGGTGCTGG CGCGCCGCGTGGTCGCCTTCCTGATCGATTTCGTCATCCTGTCGGTGCCG GTCGTTTTCCTGGCGATGTTCATCTTCGTCGTCGGCGTGGTCACGCTGGG CCTGGGCTTTCTGTTCTACGGCCTGCTCTGGCCGGCGATGGTGATCTGGG CACTTGCCTATTATGGCATCACGCTCGGCGGCCCGCGCTCGGCTACTCTG GGCATGCGGATGATGGATCTGGAAATGCGCACCTGGTACGGCAGCCCGGC CTATTTCGTGCTGGGGGCCGTCCACGCCATCGTGTTCTGGATCACGGTTT CGATGCTGACGCCGTTCGTCCTGCTGGTGGCCTTCTTCAACGAGCGCCGG CGCGGGCTGCACGACATTCTGGTCGGGACCGTCGTCATCAACAATGCGGA GCGGTCAAGCGCGCTGCGGGGCTCCCGCCGGCCATTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12928:673..1212+

>mRNA_P-wetherbeei_contig12928.1.1 ID=mRNA_P-wetherbeei_contig12928.1.1|Name=mRNA_P-wetherbeei_contig12928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=540bp|location=Sequence derived from alignment at P-wetherbeei_contig12928:673..1212+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCACGGGCGAACCCAAGCGGATCGGCGTGTCGATCGAACTCAAGCC
GCATGCCTACGATCCGATCACCAATCCGGAGCTGTTCGAGGGGGTGCTGG
CGCGCCGCGTGGTCGCCTTCCTGATCGATTTCGTCATCCTGTCGGTGCCG
GTCGTTTTCCTGGCGATGTTCATCTTCGTCGTCGGCGTGGTCACGCTGGG
CCTGGGCTTTCTGTTCTACGGCCTGCTCTGGCCGGCGATGGTGATCTGGG
CACTTGCCTATTATGGCATCACGCTCGGCGGCCCGCGCTCGGCTACTCTG
GGCATGCGGATGATGGATCTGGAAATGCGCACCTGGTACGGCAGCCCGGC
CTATTTCGTGCTGGGGGCCGTCCACGCCATCGTGTTCTGGATCACGGTTT
CGATGCTGACGCCGTTCGTCCTGCTGGTGGCCTTCTTCAACGAGCGCCGG
CGCGGGCTGCACGACATTCTGGTCGGGACCGTCGTCATCAACAATGCGGA
GCGGTCAAGCGCGCTGCGGGGCTCCCGCCGGCCATTCTGA
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