mRNA_P-wetherbeei_contig12926.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12926.1.1
Unique NamemRNA_P-wetherbeei_contig12926.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: UPI000EAAF6CA (leucine-rich repeat-containing protein 9 isoform X1 n=5 Tax=Arvicolinae TaxID=39087 RepID=UPI000EAAF6CA)

HSP 1 Score: 63.9 bits (154), Expect = 5.330e-9
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTSHGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EIS+VE L+ L  L +L +  NR+ +  D+    ++  +L  L L  N +  L  L +    L +L L  N + + AE   L  +P+LR+LT+ GNP+C +  +R  ++  LP L +LDG+PI
Sbjct: 1231 EISQVEGLDNLIVLQELVVDHNRIRAFNDS--AFAKPSSLLTLHLEENRLRELGKLQSL-VKLEKLFLGYNKIQEIAELEKLDVIPSLRELTVYGNPICRKMAHRHVLIFRLPNLQMLDGIPI 1350
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BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: UPI00122EDF47 (leucine-rich repeat-containing protein 9 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI00122EDF47)

HSP 1 Score: 63.9 bits (154), Expect = 5.340e-9
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRL-TSHGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EIS+VE L+ L  L +L +  NR+ T H  A A  S L+AL    L  N +  L  L      L +L L  N V D AE   L  L +LR+LT+ GNP+C +  +R  ++  LP L +LDG+P+
Sbjct: 1233 EISQVEGLDNLAVLQELIVDHNRIRTFHDSAFAKPSSLLAL---HLEENRLRELSKLQPL-LKLEKLFLGFNKVQDMAELERLDVLSSLRELTVYGNPICRKVLHRHMLIFRLPNLQILDGLPV 1352
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BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: A0A1S3W664_ERIEU (leucine-rich repeat-containing protein 9-like n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3W664_ERIEU)

HSP 1 Score: 63.5 bits (153), Expect = 7.350e-9
Identity = 42/123 (34.15%), Postives = 69/123 (56.10%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTSHGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EI++VE L+ L  L +L +  NR+ +  D+    ++  +L  L L  N +  L  L A    L +L L  N + D AE   L A+ +LR+LT+ GNP+C +  +R  ++  +P L +LDG+P+
Sbjct: 1237 EITQVEGLDNLAVLQELVVDHNRIKTFNDS--AFAKPSSLLTLHLEENRLRELSKLQAL-VKLEKLFLGYNKIQDMAELEKLDAISSLRELTVYGNPICRKMLHRHVIIFRMPNLQMLDGIPV 1356
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BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: UPI0004D062AC (leucine-rich repeat-containing protein 9-like n=1 Tax=Galeopterus variegatus TaxID=482537 RepID=UPI0004D062AC)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-8
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTS-HGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EIS+VE L+ L  L +L +  NR+ + H  A A  S L+AL    L  N +  L  L      L +L L  N + D AE   L  + +LR+LT+ GNP+C +  +R  ++  LP L +LDG+P+
Sbjct: 1173 EISQVEGLDNLVVLQELVVDHNRIRAFHDSAFAKPSSLLAL---HLEENRVRKLSKLQPL-VKLEKLFLGYNKIQDIAELEKLDVISSLRELTVYGNPICRKMLHRHVLIFRLPNLQMLDGIPV 1292
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BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: UPI0003F0829C (leucine-rich repeat-containing protein 9-like n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0829C)

HSP 1 Score: 62.8 bits (151), Expect = 1.340e-8
Identity = 48/124 (38.71%), Postives = 69/124 (55.65%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTS-HGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EIS+VE L+ L  L +L +  NR+ + H  A A  S L+AL    L  N +  L  L      L +L L  N + D AE   L A+ +LR+LT+ GNP+C +  +R  ++  LP L +LDG+PI
Sbjct: 1243 EISQVEGLDNLVVLQELVVDHNRIRAFHDSAFAKPSSLLAL---HLEENRLRELSKLQPL-LKLEKLFLGYNKIQDMAELEKLDAISSLRELTVYGNPICRKVLHRHLLIFRLPNLQMLDGIPI 1362
[Close]
BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: F6TS65_HORSE (Protein phosphatase 1 regulatory subunit 7 n=4 Tax=Equus TaxID=9789 RepID=F6TS65_HORSE)

HSP 1 Score: 62.8 bits (151), Expect = 1.350e-8
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTSHGD-ALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EIS+VE L+ L  L +L +  NR+ +  D A A  S L+AL    L  N +  L  L      L +L L  N + D AE   L  + +LR+LT+ GNP+C +  +R  ++  LP L +LDG+P+
Sbjct: 1232 EISQVEGLDSLAVLQELVMDHNRIRAFNDSAFAKPSSLLAL---HLEENRLRELSKLQPL-VKLEKLFLGYNKIQDMAELEKLDGISSLRELTVYGNPICRKMLHRHVLIFRLPNLQMLDGIPV 1351
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BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: H0VA59_CAVPO (Leucine rich repeat containing 9 n=1 Tax=Cavia porcellus TaxID=10141 RepID=H0VA59_CAVPO)

HSP 1 Score: 62.4 bits (150), Expect = 1.820e-8
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTSHGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EIS+VE L+ L  L +L +  NR+ +  D+    S+  +L  L L  N +  L  L      L +L L  N + D AE   L  + +LR+LT+ GNP+C +  +R  ++  LP L +LDG+PI
Sbjct: 1191 EISQVEGLDNLVVLQELVVDHNRIRAFNDS--AFSKPSSLLSLHLEENRLRELSKLQPLA-KLEKLFLGYNKIQDMAELEKLDVIVSLRELTVYGNPICRKILHRHVLIFRLPNLQMLDGIPI 1310
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BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: A0A8C2UVI8_CHILA (Leucine-rich repeat-containing protein 9 n=2 Tax=Chinchilla lanigera TaxID=34839 RepID=A0A8C2UVI8_CHILA)

HSP 1 Score: 62.4 bits (150), Expect = 1.830e-8
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTSHGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EIS+VE L+ L  L +L +  NR+ +  D+    S+  +L  L L  N +  L  L      L +L L  N + D AE   L  + +LR+LT+ GNP+C +  +R  ++  LP L +LDG+P+
Sbjct: 1223 EISQVEGLDNLAVLQELVVDHNRIRAFNDS--AFSKPSSLLALHLEENRVRELSKLQPLA-KLEKLFLGYNKIQDMAELEKLDVISSLRELTVYGNPICRKILHRHVLIFRLPNLQMLDGIPV 1342
[Close]
BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: UPI000661BD7B (LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 9-like n=1 Tax=Cavia porcellus TaxID=10141 RepID=UPI000661BD7B)

HSP 1 Score: 62.4 bits (150), Expect = 1.830e-8
Identity = 44/123 (35.77%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTSHGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPELAVLDGVPI 369
            EIS+VE L+ L  L +L +  NR+ +  D+    S+  +L  L L  N +  L  L      L +L L  N + D AE   L  + +LR+LT+ GNP+C +  +R  ++  LP L +LDG+PI
Sbjct: 1200 EISQVEGLDNLVVLQELVVDHNRIRAFNDS--AFSKPSSLLSLHLEENRLRELSKLQPLA-KLEKLFLGYNKIQDMAELEKLDVIVSLRELTVYGNPICRKILHRHVLIFRLPNLQMLDGIPI 1319
[Close]
BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Match: A0A1B0GKV1_LUTLO (Uncharacterized protein n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A1B0GKV1_LUTLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.940e-8
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 1 
Query:    1 EISRVENLEVLPSLTKLNLSCNRLTSHGDALAGVSRLVALTDLDLSGNAIASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCGRRGYRAAVLAALPE 342
            E++ V+NL  +P L+ L+L+ N++++  D    +  LV L    LS N I SL        SL  L+++ N + D AE  HLA LP L ++ L+GNP+ G   YR+ VL+   E
Sbjct:   31 ELTSVQNLSAMPCLSALSLTENKISTCPDWHLQLGNLVTLI---LSQNFIQSLVGFRKMY-SLVNLDVSCNQINDIAEVDHLANLPCLENIKLTGNPVAGSVDYRSKVLSRFVE 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12926.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000EAAF6CA5.330e-934.96leucine-rich repeat-containing protein 9 isoform X... [more]
UPI00122EDF475.340e-939.52leucine-rich repeat-containing protein 9 n=1 Tax=E... [more]
A0A1S3W664_ERIEU7.350e-934.15leucine-rich repeat-containing protein 9-like n=1 ... [more]
UPI0004D062AC1.340e-837.10leucine-rich repeat-containing protein 9-like n=1 ... [more]
UPI0003F0829C1.340e-838.71leucine-rich repeat-containing protein 9-like n=1 ... [more]
F6TS65_HORSE1.350e-837.10Protein phosphatase 1 regulatory subunit 7 n=4 Tax... [more]
H0VA59_CAVPO1.820e-835.77Leucine rich repeat containing 9 n=1 Tax=Cavia por... [more]
A0A8C2UVI8_CHILA1.830e-834.96Leucine-rich repeat-containing protein 9 n=2 Tax=C... [more]
UPI000661BD7B1.830e-835.77LOW QUALITY PROTEIN: leucine-rich repeat-containin... [more]
A0A1B0GKV1_LUTLO1.940e-836.84Uncharacterized protein n=1 Tax=Lutzomyia longipal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12926contigP-wetherbeei_contig12926:384..830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LAY5
PFAMsLRR_4,LRR_8,LRR_9
Model size447
Max annot lvl2759|Eukaryota
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.49e-14
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Descriptionaxoneme assembly
Cds size447
COG categoryL
BRITEko00000,ko01009,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.7988582-CDS-P-wetherbeei_contig12926:383..8301683185966.7988582-CDS-P-wetherbeei_contig12926:383..830Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12926 384..830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12926.1.1prot_P-wetherbeei_contig12926.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12926 384..830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12926.1.1

>prot_P-wetherbeei_contig12926.1.1 ID=prot_P-wetherbeei_contig12926.1.1|Name=mRNA_P-wetherbeei_contig12926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp
EISRVENLEVLPSLTKLNLSCNRLTSHGDALAGVSRLVALTDLDLSGNAI
ASLCALAAAGPSLARLNLADNDVADTAEARHLAALPALRDLTLSGNPLCG
RRGYRAAVLAALPELAVLDGVPIGGAEAIASRVLASGIAAECGSGGKGG
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mRNA from alignment at P-wetherbeei_contig12926:384..830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12926.1.1 ID=mRNA_P-wetherbeei_contig12926.1.1|Name=mRNA_P-wetherbeei_contig12926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig12926:384..830- (Phaeothamnion wetherbeei SAG_119_79)
GAAATCTCCCGAGTCGAAAACCTCGAGGTGCTTCCCTCGCTGACCAAGCT
CAACCTCTCGTGCAACCGCCTCACGAGCCATGGCGACGCCCTCGCCGGCG
TCTCCCGCCTCGTTGCACTGACCGACCTCGACCTGTCCGGCAACGCGATC
GCCTCCCTTTGCGCCCTCGCCGCTGCCGGCCCATCCCTCGCACGCCTCAA
CCTCGCCGACAACGACGTCGCCGACACCGCCGAGGCGCGCCACCTGGCGG
CGCTGCCGGCGCTCCGGGATCTGACACTGTCGGGGAACCCGCTCTGCGGC
CGCCGCGGCTACCGCGCCGCCGTGCTGGCGGCACTCCCGGAGTTGGCGGT
ACTGGACGGGGTGCCCATCGGCGGCGCCGAGGCTATCGCTTCGCGGGTTC
TTGCCAGCGGCATTGCCGCAGAATGCGGAAGCGGCGGTAAAGGAGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12926:384..830-

>mRNA_P-wetherbeei_contig12926.1.1 ID=mRNA_P-wetherbeei_contig12926.1.1|Name=mRNA_P-wetherbeei_contig12926.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig12926:384..830- (Phaeothamnion wetherbeei SAG_119_79)
GAAATCTCCCGAGTCGAAAACCTCGAGGTGCTTCCCTCGCTGACCAAGCT
CAACCTCTCGTGCAACCGCCTCACGAGCCATGGCGACGCCCTCGCCGGCG
TCTCCCGCCTCGTTGCACTGACCGACCTCGACCTGTCCGGCAACGCGATC
GCCTCCCTTTGCGCCCTCGCCGCTGCCGGCCCATCCCTCGCACGCCTCAA
CCTCGCCGACAACGACGTCGCCGACACCGCCGAGGCGCGCCACCTGGCGG
CGCTGCCGGCGCTCCGGGATCTGACACTGTCGGGGAACCCGCTCTGCGGC
CGCCGCGGCTACCGCGCCGCCGTGCTGGCGGCACTCCCGGAGTTGGCGGT
ACTGGACGGGGTGCCCATCGGCGGCGCCGAGGCTATCGCTTCGCGGGTTC
TTGCCAGCGGCATTGCCGCAGAATGCGGAAGCGGCGGTAAAGGAGGC
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