mRNA_P-wetherbeei_contig12925.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 7.920e-22 Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1
Query: 1 SSNACTITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFESPDSEV 186
SSN+CTITVKSS PRTA M +L V+ GW+ K+N+Q WQ R+CC+VPHTFLYYFES D+EV
Sbjct: 81 SSNSCTITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEV 142
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 7.970e-22 Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1
Query: 1 SSNACTITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFESPDSEV 186
SSN+CTITVKSS PRTA M +L V+ GW+ K+N+Q WQ R+CC+VPHTFLYYFES D+EV
Sbjct: 86 SSNSCTITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEV 147
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A7S2M8C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8C0_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.580e-20 Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 1
Query: 16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFE-SP----DSEVGCEVW 201
T T+KS+ PRT M+ L KCGWLVKRNEQ +WQ R+CC+VPHTFLYYFE SP D + EVW
Sbjct: 42 TCTIKSAPPRTPEVMSMLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEASPEVKTDDDGNYEVW 108
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A835Z0T3_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T3_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 9.080e-18 Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 4 SNACTITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFESPDS 180
S++ T+ VKSS R A RLGV+ GWL+KRNEQR+WQPRFC +VPHT+LYYFES +S
Sbjct: 25 SHSSTLVVKSSPLRDAQTTKRLGVRSGWLLKRNEQRVWQPRFCVMVPHTYLYYFESENS 83
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: B5YND1_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YND1_THAPS) HSP 1 Score: 84.7 bits (208), Expect = 1.700e-17 Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1
Query: 16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
T T+KS+ PRT M+ L KCGWLVKRNEQ +WQ R+CC+VPHTFLYYFE+
Sbjct: 42 TCTIKSAPPRTPEVMSLLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEA 93
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A7S4IVE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVE8_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 5.460e-17 Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
T T+KS+ PRT M L VK GWLVKRNEQ +WQ R+CC+VPHTFLYYFE+
Sbjct: 42 TCTIKSAPPRTPEVMTMLSVKSGWLVKRNEQHVWQRRWCCVVPHTFLYYFEA 93
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A1E7FMA5_9STRA (PH domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMA5_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 3.800e-16 Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query: 16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
T T+KS+ PRT + L VK GWL KRNEQ +WQ R+CC+VPHTFLYYF+S
Sbjct: 40 TCTIKSAPPRTPDVLGMLSVKSGWLFKRNEQHVWQARYCCVVPHTFLYYFDS 91
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A7S2K1M2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1M2_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.750e-15 Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
T T+KS+ PRT M +L K GWL KRNEQ WQ R+CC+VPHTFLYYF+S
Sbjct: 63 TCTIKSAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDS 114
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A7S2K3B6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3B6_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.800e-15 Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
T T+KS+ PRT M +L K GWL KRNEQ WQ R+CC+VPHTFLYYF+S
Sbjct: 63 TCTIKSAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDS 114
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A448ZEE1_9STRA (PH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEE1_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 8.710e-15 Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFE 168
T T+KS+ PRT + L K GWL KRNEQ +WQ R+CC+VPHTFLYYF+
Sbjct: 40 TCTIKSAPPRTPAVLGMLANKSGWLFKRNEQHIWQARYCCVVPHTFLYYFD 90 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig12925.1.1 >prot_P-wetherbeei_contig12925.1.1 ID=prot_P-wetherbeei_contig12925.1.1|Name=mRNA_P-wetherbeei_contig12925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp SSNACTITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTback to top mRNA from alignment at P-wetherbeei_contig12925:177..395- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig12925.1.1 ID=mRNA_P-wetherbeei_contig12925.1.1|Name=mRNA_P-wetherbeei_contig12925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig12925:177..395- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig12925:177..395- >mRNA_P-wetherbeei_contig12925.1.1 ID=mRNA_P-wetherbeei_contig12925.1.1|Name=mRNA_P-wetherbeei_contig12925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig12925:177..395- (Phaeothamnion wetherbeei SAG_119_79)back to top |