mRNA_P-wetherbeei_contig12925.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12925.1.1
Unique NamemRNA_P-wetherbeei_contig12925.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 7.920e-22
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 SSNACTITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFESPDSEV 186
            SSN+CTITVKSS PRTA  M +L V+ GW+ K+N+Q  WQ R+CC+VPHTFLYYFES D+EV
Sbjct:   81 SSNSCTITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEV 142          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 7.970e-22
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 SSNACTITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFESPDSEV 186
            SSN+CTITVKSS PRTA  M +L V+ GW+ K+N+Q  WQ R+CC+VPHTFLYYFES D+EV
Sbjct:   86 SSNSCTITVKSSPPRTAAEMTKLSVRRGWMFKKNKQGAWQRRYCCLVPHTFLYYFESKDAEV 147          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A7S2M8C0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M8C0_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.580e-20
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFE-SP----DSEVGCEVW 201
            T T+KS+ PRT   M+ L  KCGWLVKRNEQ +WQ R+CC+VPHTFLYYFE SP    D +   EVW
Sbjct:   42 TCTIKSAPPRTPEVMSMLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEASPEVKTDDDGNYEVW 108          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A835Z0T3_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.080e-18
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1
Query:    4 SNACTITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFESPDS 180
            S++ T+ VKSS  R A    RLGV+ GWL+KRNEQR+WQPRFC +VPHT+LYYFES +S
Sbjct:   25 SHSSTLVVKSSPLRDAQTTKRLGVRSGWLLKRNEQRVWQPRFCVMVPHTYLYYFESENS 83          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: B5YND1_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YND1_THAPS)

HSP 1 Score: 84.7 bits (208), Expect = 1.700e-17
Identity = 35/52 (67.31%), Postives = 42/52 (80.77%), Query Frame = 1
Query:   16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
            T T+KS+ PRT   M+ L  KCGWLVKRNEQ +WQ R+CC+VPHTFLYYFE+
Sbjct:   42 TCTIKSAPPRTPEVMSLLSSKCGWLVKRNEQHVWQKRWCCVVPHTFLYYFEA 93          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A7S4IVE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVE8_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.460e-17
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1
Query:   16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
            T T+KS+ PRT   M  L VK GWLVKRNEQ +WQ R+CC+VPHTFLYYFE+
Sbjct:   42 TCTIKSAPPRTPEVMTMLSVKSGWLVKRNEQHVWQRRWCCVVPHTFLYYFEA 93          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A1E7FMA5_9STRA (PH domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMA5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.800e-16
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
            T T+KS+ PRT   +  L VK GWL KRNEQ +WQ R+CC+VPHTFLYYF+S
Sbjct:   40 TCTIKSAPPRTPDVLGMLSVKSGWLFKRNEQHVWQARYCCVVPHTFLYYFDS 91          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A7S2K1M2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1M2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.750e-15
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
            T T+KS+ PRT   M +L  K GWL KRNEQ  WQ R+CC+VPHTFLYYF+S
Sbjct:   63 TCTIKSAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDS 114          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A7S2K3B6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3B6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.800e-15
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1
Query:   16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFES 171
            T T+KS+ PRT   M +L  K GWL KRNEQ  WQ R+CC+VPHTFLYYF+S
Sbjct:   63 TCTIKSAPPRTPECMTKLASKSGWLYKRNEQNKWQKRWCCVVPHTFLYYFDS 114          
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Match: A0A448ZEE1_9STRA (PH domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEE1_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.710e-15
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   16 TITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHTFLYYFE 168
            T T+KS+ PRT   +  L  K GWL KRNEQ +WQ R+CC+VPHTFLYYF+
Sbjct:   40 TCTIKSAPPRTPAVLGMLANKSGWLFKRNEQHIWQARYCCVVPHTFLYYFD 90          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12925.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LCP7_ECTSI7.920e-2267.74PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JHM0_9PHAE7.970e-2267.74PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S2M8C0_9STRA2.580e-2061.19Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A835Z0T3_9STRA9.080e-1864.41PH domain-containing protein n=1 Tax=Tribonema min... [more]
B5YND1_THAPS1.700e-1767.31Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S4IVE8_9STRA5.460e-1767.31Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1E7FMA5_9STRA3.800e-1663.46PH domain-containing protein n=1 Tax=Fragilariopsi... [more]
A0A7S2K1M2_9STRA1.750e-1563.46Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S2K3B6_9STRA1.800e-1563.46Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A448ZEE1_9STRA8.710e-1560.78PH domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12925contigP-wetherbeei_contig12925:177..395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LCP7
PFAMsPH
Model size219
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-22
EggNOG OGs2E9MN@1|root,2SFYW@2759|Eukaryota
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-03_002090.1
DescriptionPleckstrin homology domain.
Cds size219
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.7276587-CDS-P-wetherbeei_contig12925:176..3951683185966.7276587-CDS-P-wetherbeei_contig12925:176..395Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12925 177..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12925.1.1prot_P-wetherbeei_contig12925.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12925 177..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12925.1.1

>prot_P-wetherbeei_contig12925.1.1 ID=prot_P-wetherbeei_contig12925.1.1|Name=mRNA_P-wetherbeei_contig12925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
SSNACTITVKSSAPRTAPNMARLGVKCGWLVKRNEQRLWQPRFCCIVPHT
FLYYFESPDSEVGCEVWGPETS*
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mRNA from alignment at P-wetherbeei_contig12925:177..395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12925.1.1 ID=mRNA_P-wetherbeei_contig12925.1.1|Name=mRNA_P-wetherbeei_contig12925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig12925:177..395- (Phaeothamnion wetherbeei SAG_119_79)
AGCAGCAACGCCTGCACCATCACGGTCAAGTCGAGCGCCCCACGGACCGC GCCCAACATGGCGCGCCTCGGCGTAAAGTGCGGCTGGCTCGTGAAGCGGA ACGAACAGCGTCTGTGGCAGCCGCGCTTCTGCTGCATCGTGCCGCACACC TTTCTTTATTACTTCGAGTCGCCAGACTCGGAGGTGGGTTGTGAAGTGTG GGGGCCAGAAACTTCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12925:177..395-

>mRNA_P-wetherbeei_contig12925.1.1 ID=mRNA_P-wetherbeei_contig12925.1.1|Name=mRNA_P-wetherbeei_contig12925.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig12925:177..395- (Phaeothamnion wetherbeei SAG_119_79)
AGCAGCAACGCCTGCACCATCACGGTCAAGTCGAGCGCCCCACGGACCGC
GCCCAACATGGCGCGCCTCGGCGTAAAGTGCGGCTGGCTCGTGAAGCGGA
ACGAACAGCGTCTGTGGCAGCCGCGCTTCTGCTGCATCGTGCCGCACACC
TTTCTTTATTACTTCGAGTCGCCAGACTCGGAGGTGGGTTGTGAAGTGTG
GGGGCCAGAAACTTCCTGA
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