mRNA_P-wetherbeei_contig1292.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1292.4.1
Unique NamemRNA_P-wetherbeei_contig1292.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A6H5KY82_9PHAE (RECA_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY82_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 6.280e-59
Identity = 132/278 (47.48%), Postives = 168/278 (60.43%), Query Frame = 1
Query:    1 AGMPTEMRTALSIFQSGEER-RLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVHEGG----------------LDGSGNVPALGLAWTQCVSHRFVVRRLDRRFSCFSLAGSDQADAGRGVGN 783
            AG   E  TAL++ ++     RLSFGC  LDAAF GGV + GITEIAGEAGAGKTQLCLQLLL QA+L+   G +GGK+ VL+CGEG FPSRRLRQ+A T  + + G V    LM+GVCI      + Q+  +   LP +M  + V+LVVID+I+ALFRS  G  + D+  R+ +L  ++QQMKRL D H  AFVV+NQ VTA+  S   GG                     +VPA+GL W+QC++ RF VRR D R S      S+     R   N
Sbjct:   54 AGTAPECTTALAMLKNAARLDRLSFGCPSLDAAFEGGVRVQGITEIAGEAGAGKTQLCLQLLL-QAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQS-RHG-VKPEKLMEGVCIQNAKTLDDQMMIIMEHLPHIMRSQNVKLVVIDSIAALFRSDLGCGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQ-VTAKFGSSTIGGGXXXXXXXXXXXXXXXXXXXXSVPAMGLLWSQCINTRFKVRRRDYRLSLQPPPSSESGSRQRATPN 327          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: D8LGE7_ECTSI (RECA_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE7_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 1.260e-57
Identity = 123/245 (50.20%), Postives = 157/245 (64.08%), Query Frame = 1
Query:    1 AGMPTEMRTALSIFQSGEER-RLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVH--------------EGGLDGSGNVPALGLAWTQCVS 690
            AG   E  TAL++ +      RLSFGC  LDAAF GGV + G+TEIAGEAGAGKTQLCLQLLL QA+L+   G +GGK+ VL+CGEG FPSRRLRQ+A T  + + G V    LM+GVCI      + Q+  +   LP +M  + V+LVVID+I+ALFRS  G  + D+  R+ +L  ++QQMKRL D H  AFVV+NQ VTAR  S                 GG  G G+VPA+GL W+QC++
Sbjct:   54 AGTAPECTTALAMSKDAARLDRLSFGCPSLDAAFEGGVRVQGVTEIAGEAGAGKTQLCLQLLL-QAQLAPEAGGLGGKSYVLTCGEGDFPSRRLRQMASTYQS-RHG-VKPEKLMEGVCIQNAKTLDDQMMIIMEHLPHIMRSQNVKLVVIDSIAALFRSDMGRGRGDIGERSRLLGRLSQQMKRLGDRHGAAFVVVNQ-VTARFGSSTIGGGGGRGQGTMGVVGGSGGGGSVPAMGLLWSQCIN 294          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A4D9CSH0_9STRA (RECA_2 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSH0_9STRA)

HSP 1 Score: 162 bits (410), Expect = 4.440e-43
Identity = 107/254 (42.13%), Postives = 145/254 (57.09%), Query Frame = 1
Query:   10 PTEMRTALSIFQSGEE-RRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEG--------IVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARE---RVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQ---QVTARPVSVHEGG---LDGSGNVPALGLAWTQCVSHRFVVRRLD 717
            P   RTA  ++Q  +  RR+S GC VLDA F GG+P HG+ E++G AGAGKTQL LQLL++Q R + AE          V G++  LS  EG  P++RL ++A        G      +++ V I+   N E Q+  L +QLP+L+      ++RL VID++SALFR  F  S+ D   RA ++  MA+QMKRLSD     FVV NQ      A    V EGG   + G G  PALGL+W+ CV  RF++ R D
Sbjct:   36 PRPPRTAYDLYQDEKHTRRVSLGCPVLDATFRGGLPGHGVVEVSGMAGAGKTQLMLQLLVQQVRDAEAEWRRAKYATPFVAGRSFYLST-EGPLPAKRLAEMAAATCPEDSGFAQ--RVLESVIIVEAKNVEDQLYLLTTQLPSLLGDASLGKIRLCVIDSMSALFRGEFSLSKGDTLERAKMIFTMAKQMKRLSDRWGLPFVVTNQVTADFAAATFGVWEGGNADVVGDGVQPALGLSWSNCVHTRFLLSRRD 286          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A0M0LPY7_9EUKA (DNA repair protein xrcc3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LPY7_9EUKA)

HSP 1 Score: 139 bits (351), Expect = 3.780e-35
Identity = 102/240 (42.50%), Postives = 134/240 (55.83%), Query Frame = 1
Query:   46 SGEERRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPS--RRLRQLADTVATTKLGL-VDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRST---FGGSQRDVAG-RAPVLIAMAQQMKRLSDEHNCAFVVLNQQV----------TARPVSVHEGGL-DGSGNVPALGLAWTQCVSHRFVVRR 711
            +G  R L  GC  LDA  GGG+  +GITEIAGEAGAGKTQL LQL L QA+L  AEG +GG A  L  G        RRL QLAD  A     +  D   L + V +L + +P+     +  ++PAL+ +  VRL+VID+I  ++R        S R + G RA  L+ +A ++K L+ + + A VVLNQ V          TA P  +   G  DGS  VPALGLAW+ CV+ R V+ R
Sbjct:    5 AGHTRLLKTGCPHLDAFLGGGIDTNGITEIAGEAGAGKTQLALQLTL-QAQLPPAEGGLGGAAVYLYGGTANVEPALRRLHQLADAFAKRHWRVQADCELLKNNVYVLQIEDPDDLWRTVSERVPALLGQHSVRLLVIDSIGGVYRGQDEESALSARTMHGQRAQQLLRLAAKLKELAHKFDIATVVLNQVVDKPSDGQNRRTAAPWELGACGTPDGSMRVPALGLAWSSCVNTRLVLTR 243          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A8B7ZUW3_ACAPL (DNA repair protein XRCC3-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZUW3_ACAPL)

HSP 1 Score: 139 bits (350), Expect = 1.830e-34
Identity = 100/250 (40.00%), Postives = 138/250 (55.20%), Query Frame = 1
Query:   25 TALSIFQ-----SGEERRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADT----VATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRRLDRRFSCFSLAG 747
            TAL ++Q     S     LS GCEVLDA   GG+   GITEIAGE+ AGKTQLC+QL L   R +   G+ GG   V  C E  FPS+RL QL +     ++ TK   +    L D + I  L   +Q V  +Q ++P L+ + RV+L+V+D+++ALFR  F  S R+ A RA  L  +  Q+ RLS  H+   V +NQ VTA   +      +    +PALGLAW+  V  R ++ R + + S F  AG
Sbjct:   62 TALELYQGTCPKSLRVSSLSTGCEVLDAFLRGGILSPGITEIAGESAAGKTQLCMQLCLSVQRSTVNGGLDGG--AVYICTEDVFPSKRLHQLIENFQKRLSATKYHQLK---LGDNIFIEHLSERDQLVHCIQYRIPLLLKQSRVKLIVVDSLAALFRCEF--SPREAARRARHLQTLGAQLHRLSWLHDVPVVCVNQ-VTANMSNNSSSHSNQCQLIPALGLAWSNLVQTRLMLGRTNYKLSSFDAAG 303          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A7S4ESE5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4ESE5_CHRCT)

HSP 1 Score: 137 bits (344), Expect = 2.190e-33
Identity = 96/254 (37.80%), Postives = 138/254 (54.33%), Query Frame = 1
Query:   58 RRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLAD--TVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVA-GRAPVLIAMAQQMKRLSDEHNCAFVVLNQ--------------------------------QVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHR-FVVRR 711
            R+LS GC +LDA+ GGG+   GITEIAG AG GKTQL LQL+L Q +L    G +GG A +L     +  ++RLRQLAD  +V  ++LG  + + L+D V +  +H+ E   E L   LP ++A  RVRL+V+D+  ALFR+     +R  A  R+  LIA A ++K+LSD+++ A VV N+                                 VT  P+        G   +PALGL+W+ C++ R F+ RR
Sbjct:   25 RKLSTGCPLLDASLGGGLDARGITEIAGAAGVGKTQLVLQLML-QVQLPVEYGGLGGGAILLHSAPEQATTKRLRQLADAFSVRHSRLG-AEPNRLLDHVTMGKVHSAEMLAEMLSRHLPQILATSRVRLLVVDSFGALFRAV---DERGAALERSSQLIAHAHRLKQLSDDYDIAVVVTNEATDKPIEQIAAAAGDIAAPSLQSLSLVSCNRPSVTVSPIEAKACCTSGKMTLPALGLSWSSCINTRLFLTRR 273          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A1V9Z145_9STRA (DNA repair protein XRCC3 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z145_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.240e-32
Identity = 82/213 (38.50%), Postives = 122/213 (57.28%), Query Frame = 1
Query:   73 GCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRR 711
            GCE +D    GG P   ++EI G AG+GKTQLCLQLLL QA+   AEG +    C +   +G  P +RL QLA           DG+  ++ + +    +P Q + AL+++LP L+ +  VRLV++D I+A+FR     S  +   R+ V+  M   M+ L+ +++ AF+V+NQ +TA   +       G G VPALGLAW+ CV+ RF V +
Sbjct:   15 GCEAVDLLLEGGFPTGIVSEICGVAGSGKTQLCLQLLL-QAQRPLAEGGLAASCCYMY-SDGLSPLKRLDQLASAS--------DGAVSLNNIFLEAATDPVQLLHALKTRLPPLLDQHNVRLVIVDAITAVFRGLSVDSASEAGDRSRVMFEMVNVMRILAAQYDVAFIVVNQ-MTANMKT-------GDGTVPALGLAWSACVNQRFEVAK 209          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A5D6XH12_9STRA (RECA_2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH12_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.700e-31
Identity = 94/250 (37.60%), Postives = 136/250 (54.40%), Query Frame = 1
Query:   19 MRTALSIFQSGEERR-LSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLAD-------TVATTKL-----------GLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRR 711
            M TAL +  +  +   L  G   LDA   GG     I+E+ GEA AGKTQLCLQLLL Q  L  A G +G  AC +S  EG    +RL +LA        ++A+ K            G  + SA +DG+ +  L+  ++ ++ LQS+LPAL+  +  +LVVID+I+ALFR     S ++ + R+ ++  MA  ++ LS ++   FVV NQ VT    +     L GS   PALGL+W+ CV+ R +V R
Sbjct:    1 MTTALELLHAQPQTAVLRSGVASLDALLRGGFRAGVISELCGEASAGKTQLCLQLLL-QCALPPALGGLGASACYVST-EGVGSVKRLHELAGVYARRFGSLASRKRKRPTDSSEESEGDANASAFLDGIFVEQLYESDELLDLLQSRLPALLEEQNTKLVVIDSIAALFRQEATASVKEASRRSRLMFHMANCIRILSAQYGVVFVVSNQ-VTGNFAAAPAEALQGSAFKPALGLSWSNCVNQRLMVTR 247          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: L8GYS6_ACACA (DNA repair protein XRCC3, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYS6_ACACA)

HSP 1 Score: 130 bits (328), Expect = 6.590e-31
Identity = 83/224 (37.05%), Postives = 124/224 (55.36%), Query Frame = 1
Query:   61 RLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGLVD----GSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQ---QVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRR 711
            +L  GC +LD   GGG+    ITEIAGEAG+GKTQLCLQL L Q +L   EG +GG A  +   EG FP RRL QL +        +      G  L D + I  + + +Q   ++  Q+P L+ +  VRLV++D+I+AL R  +G     +  R+ VL + A Q+K+++D+     VV+NQ    V    + + +        VPALGLAW+ C++ R ++ +
Sbjct:  108 KLKLGCPLLDQCLGGGLLPRHITEIAGEAGSGKTQLCLQLAL-QVQLPPEEGGLGGGAIYIGT-EGNFPQRRLDQLHEAFRHKHAHVFPPRRKGFDLRDNIYIKHVGSIDQLFHSMLKQVPPLVQQRNVRLVIVDSIAALLRYEYGSGTSQMVERSRVLFSQANQLKQIADQLQVVVVVINQVSDYVDDSRLVLSDFAAHKKRVVPALGLAWSNCINSRLLLSK 329          
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Match: A0A8K1C2K3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2K3_PYTOL)

HSP 1 Score: 128 bits (322), Expect = 7.220e-31
Identity = 95/258 (36.82%), Postives = 141/258 (54.65%), Query Frame = 1
Query:    7 MPTEMRTALSIFQSGEER--RLSFGCEVLDAAFGGGVPLHGITEIAGEAGAGKTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVATTKLGL---------VDGSA------LMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDTISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQ------QVTARPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRR 711
            M T+ RTAL ++Q+ E+    LS GC  +D    GG     +TE+ GEA AGKTQLCLQLLL Q+ L    G +GG AC + C EG    +RL +L       K G          V+ S+      L+D V I  ++  ++ V+ LQS+LP L+A    +LVVID+++A+FR    GS +D + R+ ++  +A  M+ LS +    FV+ NQ      +  A  VS H      + + PALGL+W+ C++ R ++RR
Sbjct:    1 MATQGRTALDLWQAREQEVVTLSSGCSSIDELLQGGFRSGILTEVCGEASAGKTQLCLQLLL-QSCLPPVLGGLGGSACYI-CTEGIGSIKRLHELGHAY-NQKYGSMLRKRRRTDVEQSSYNSMPSLLDSVFIEQVYEVDELVDVLQSRLPTLLADHDTKLVVIDSVAAVFRLESTGSVKDASERSRLMFHLANCMRILSAQFRVIFVMTNQVTGNFTEGAASIVSTHS-----NQHKPALGLSWSSCINQRLMLRR 250          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1292.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY82_9PHAE6.280e-5947.48RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LGE7_ECTSI1.260e-5750.20RECA_2 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A4D9CSH0_9STRA4.440e-4342.13RECA_2 domain-containing protein n=2 Tax=Monodopsi... [more]
A0A0M0LPY7_9EUKA3.780e-3542.50DNA repair protein xrcc3 n=1 Tax=Chrysochromulina ... [more]
A0A8B7ZUW3_ACAPL1.830e-3440.00DNA repair protein XRCC3-like n=1 Tax=Acanthaster ... [more]
A0A7S4ESE5_CHRCT2.190e-3337.80Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A1V9Z145_9STRA2.240e-3238.50DNA repair protein XRCC3 n=1 Tax=Achlya hypogyna T... [more]
A0A5D6XH12_9STRA1.700e-3137.60RECA_2 domain-containing protein n=1 Tax=Pythium b... [more]
L8GYS6_ACACA6.590e-3137.05DNA repair protein XRCC3, putative n=1 Tax=Acantha... [more]
A0A8K1C2K3_PYTOL7.220e-3136.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1292contigP-wetherbeei_contig1292:6002..7220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LGE7
Preferred nameXRCC3
PFAMsRad51
Model size1083
Max annot lvl2759|Eukaryota
KEGG koko:K10880
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000280,GO:0000400,GO:0000707,GO:0000724,GO:0000725,GO:0000730,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0032991,GO:0033061,GO:0033063,GO:0033554,GO:0034622,GO:0034641,GO:0035825,GO:0042148,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0045003,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0061982,GO:0065003,GO:0065004,GO:0071704,GO:0071824,GO:0071840,GO:0090304,GO:0090735,GO:0097159,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1903046
Exons2
Evalue1.52e-57
EggNOG OGsCOG0468@1|root,KOG1564@2759|Eukaryota
Ec32 ortholog descriptionDNA recombination and repair protein Rad51, C-terminal
Ec32 orthologEc-16_003770.1
Descriptionmeiotic DNA recombinase assembly
Cds size1077
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.5296924-CDS-P-wetherbeei_contig1292:6001..64901683185966.5296924-CDS-P-wetherbeei_contig1292:6001..6490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1292 6002..6490 -
1683185966.5401683-CDS-P-wetherbeei_contig1292:6626..72141683185966.5401683-CDS-P-wetherbeei_contig1292:6626..7214Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1292 6627..7214 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.5492291-UTR-P-wetherbeei_contig1292:7214..72201683185966.5492291-UTR-P-wetherbeei_contig1292:7214..7220Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1292 7215..7220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1292.4.1prot_P-wetherbeei_contig1292.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1292 6002..7214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1292.4.1

>prot_P-wetherbeei_contig1292.4.1 ID=prot_P-wetherbeei_contig1292.4.1|Name=mRNA_P-wetherbeei_contig1292.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=359bp
MPTEMRTALSIFQSGEERRLSFGCEVLDAAFGGGVPLHGITEIAGEAGAG
KTQLCLQLLLEQARLSTAEGIVGGKACVLSCGEGRFPSRRLRQLADTVAT
TKLGLVDGSALMDGVCILTLHNPEQQVEALQSQLPALMARERVRLVVIDT
ISALFRSTFGGSQRDVAGRAPVLIAMAQQMKRLSDEHNCAFVVLNQQVTA
RPVSVHEGGLDGSGNVPALGLAWTQCVSHRFVVRRLDRRFSCFSLAGSDQ
ADAGRGVGNGGGPSSSGGGGSSGGWSSSGRENNCGSAGEWGDVTQGSGGG
AGGGDSAFGSGGCGGGASKAVQWCSQRELRVDMSSLLPASSSALFVVEGC
GVRGQTPQG
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mRNA from alignment at P-wetherbeei_contig1292:6002..7220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1292.4.1 ID=mRNA_P-wetherbeei_contig1292.4.1|Name=mRNA_P-wetherbeei_contig1292.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1219bp|location=Sequence derived from alignment at P-wetherbeei_contig1292:6002..7220- (Phaeothamnion wetherbeei SAG_119_79)
GCGGGCATGCCCACGGAAATGCGCACGGCGCTCTCGATTTTTCAGTCTGG GGAGGAACGACGGCTGTCGTTTGGGTGCGAGGTCTTGGACGCTGCCTTTG GCGGCGGCGTCCCGTTGCATGGCATCACGGAGATCGCCGGAGAGGCTGGA GCTGGGAAGACGCAGCTGTGCCTGCAACTCCTGCTCGAGCAGGCACGGTT GTCGACTGCCGAGGGCATCGTCGGCGGGAAGGCCTGCGTGCTGTCGTGCG GCGAAGGCCGCTTCCCCAGCCGTCGGCTGCGCCAGCTCGCCGATACGGTG GCCACGACAAAGCTAGGGCTTGTCGACGGATCGGCGCTGATGGATGGTGT TTGTATCCTCACACTTCACAACCCCGAGCAGCAAGTAGAGGCGCTCCAGT CGCAGCTGCCGGCGTTGATGGCGCGCGAGCGCGTGCGGCTCGTAGTAATC GACACGATCTCGGCCTTGTTCCGCAGCACCTTTGGCGGCTCGCAGCGCGA CGTCGCGGGGCGAGCGCCGGTCCTTATCGCCATGGCGCAGCAGATGAAGC GCCTGAGCGACGAGCACAACTGCGCCTTTGTAGTTTTAAACCAGGTCTGT CTACCTTCCTTGGGCCTTTTCTTATTGAGCAACACCTTGCGTTTTTGCAT TAGCGGTATTAACGTTGTACAAACACCCCTTCCCATGACATGTCCTTCAC TCCATGTTTCTCGCGTTCGCGGCTGTTGAGCAGGTGACCGCGCGACCGGT CAGCGTCCATGAGGGAGGGCTGGATGGCAGTGGAAACGTTCCGGCTTTGG GGCTGGCGTGGACTCAGTGCGTGAGCCATCGCTTCGTTGTCCGGCGCCTC GACAGGCGCTTCTCGTGCTTCTCCTTGGCCGGGAGCGACCAGGCCGACGC AGGACGGGGCGTCGGGAACGGCGGCGGGCCAAGCAGCAGCGGCGGCGGCG GCAGCAGTGGCGGTTGGAGCAGCAGTGGGCGAGAGAACAACTGCGGTTCA GCTGGGGAATGGGGTGACGTCACCCAGGGCAGCGGCGGCGGTGCCGGCGG CGGCGACAGCGCTTTCGGTAGTGGCGGCTGCGGCGGCGGCGCGTCGAAGG CGGTGCAGTGGTGTAGCCAGCGCGAGCTGCGCGTGGACATGTCATCGCTC CTCCCTGCATCAAGCTCGGCGCTCTTCGTCGTCGAGGGCTGCGGCGTCCG CGGCCAAACGCCGCAGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1292:6002..7220-

>mRNA_P-wetherbeei_contig1292.4.1 ID=mRNA_P-wetherbeei_contig1292.4.1|Name=mRNA_P-wetherbeei_contig1292.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1077bp|location=Sequence derived from alignment at P-wetherbeei_contig1292:6002..7220- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCACGGAAATGCGCACGGCGCTCTCGATTTTTCAGTCTGGGGAGGA
ACGACGGCTGTCGTTTGGGTGCGAGGTCTTGGACGCTGCCTTTGGCGGCG
GCGTCCCGTTGCATGGCATCACGGAGATCGCCGGAGAGGCTGGAGCTGGG
AAGACGCAGCTGTGCCTGCAACTCCTGCTCGAGCAGGCACGGTTGTCGAC
TGCCGAGGGCATCGTCGGCGGGAAGGCCTGCGTGCTGTCGTGCGGCGAAG
GCCGCTTCCCCAGCCGTCGGCTGCGCCAGCTCGCCGATACGGTGGCCACG
ACAAAGCTAGGGCTTGTCGACGGATCGGCGCTGATGGATGGTGTTTGTAT
CCTCACACTTCACAACCCCGAGCAGCAAGTAGAGGCGCTCCAGTCGCAGC
TGCCGGCGTTGATGGCGCGCGAGCGCGTGCGGCTCGTAGTAATCGACACG
ATCTCGGCCTTGTTCCGCAGCACCTTTGGCGGCTCGCAGCGCGACGTCGC
GGGGCGAGCGCCGGTCCTTATCGCCATGGCGCAGCAGATGAAGCGCCTGA
GCGACGAGCACAACTGCGCCTTTGTAGTTTTAAACCAGCAGGTGACCGCG
CGACCGGTCAGCGTCCATGAGGGAGGGCTGGATGGCAGTGGAAACGTTCC
GGCTTTGGGGCTGGCGTGGACTCAGTGCGTGAGCCATCGCTTCGTTGTCC
GGCGCCTCGACAGGCGCTTCTCGTGCTTCTCCTTGGCCGGGAGCGACCAG
GCCGACGCAGGACGGGGCGTCGGGAACGGCGGCGGGCCAAGCAGCAGCGG
CGGCGGCGGCAGCAGTGGCGGTTGGAGCAGCAGTGGGCGAGAGAACAACT
GCGGTTCAGCTGGGGAATGGGGTGACGTCACCCAGGGCAGCGGCGGCGGT
GCCGGCGGCGGCGACAGCGCTTTCGGTAGTGGCGGCTGCGGCGGCGGCGC
GTCGAAGGCGGTGCAGTGGTGTAGCCAGCGCGAGCTGCGCGTGGACATGT
CATCGCTCCTCCCTGCATCAAGCTCGGCGCTCTTCGTCGTCGAGGGCTGC
GGCGTCCGCGGCCAAACGCCGCAGGGG
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