mRNA_P-wetherbeei_contig12917.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12917.1.1
Unique NamemRNA_P-wetherbeei_contig12917.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12917.1.1 vs. uniprot
Match: A0A7S2P099_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P099_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.180e-9
Identity = 60/185 (32.43%), Postives = 93/185 (50.27%), Query Frame = 1 
Query:  292 LEEAGDVKEQLRRSEKAHAELLDRCLSLEGEVQQIAPMRKQLEGYKREKTALQLSVKSLEAEVAARIEASDVMESRLGQLAAGTQSARDEAARLQADLRQSLPSPSSSSAAXXXXXXXXXXXGVSELNPQLTEELKRLRHERDVLAAAMDATAVARVEALAAETEDARRLADACHVQLMAARAEL 846
            +E  GDV + L+R EKAHA L+D+CL +E E+ Q+ P+++QLE Y+   T  ++++     ++    E S  +E     L  G    + EA  LQ  L++         +A           G+SELNP+L EELK LR E   L        V  V+ L    +DA+RL++    Q +  ++EL
Sbjct:  325 IEAFGDVHDALQREEKAHAVLVDKCLEMENELAQLKPLKRQLEEYRVRATDAEVALAECRDDLRRFKEKSSGLEGANLALQRGVNLQQSEADALQKRLQEEGQRSGEGGSAVGV--------GMSELNPELMEELKMLRCEYARLKDFEAKREVDSVQRLEESCDDAKRLSERFKEQFLRTKSEL 501
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BLAST of mRNA_P-wetherbeei_contig12917.1.1 vs. uniprot
Match: A0A6H5L192_9PHAE (HOOK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L192_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.860e-8
Identity = 63/198 (31.82%), Postives = 90/198 (45.45%), Query Frame = 1 
Query:  292 LEEAGDVKEQLRRSEKAHAELLDRCLSLEGEVQQIAPMRKQLEGYKREKTALQLSVKSLEAEVAARIEASDVMESRLGQLAAGTQSARDEAARLQADLRQSLPSPSSSSAAXXXXXXXXXXX----------------GVSELNPQLTEELKRLRHERDVLAAAMDATAVARVEALAAETEDARRLADACHVQLMAAR 837
            +EE   +  QL+R EKAHAE+LDRCL LE EV QI  +R+Q+  Y+R +T ++++ +    E+    E S  +   +  L    ++AR E  RLQ          S    A                           G+SE NP+L EE+ RLR   + L A +D      +  L  +  DA RLAD  H  L + R
Sbjct:  431 IEELSGLPGQLKREEKAHAEVLDRCLRLETEVTQIPQLRRQVGQYRRSQTDMEVASREQSRELETAREESARLSQEVKDLRESYEAARGEQRRLQERWTARDTEGSDDEWAGGGIGEGGHGFLGAELLGGVFAGQAVVGISEFNPELMEEMARLRLANEQLKAKVDYNTEETILDLERKAGDASRLADKFHDSLASER 628
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BLAST of mRNA_P-wetherbeei_contig12917.1.1 vs. uniprot
Match: K0T9J6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T9J6_THAOC)

HSP 1 Score: 66.2 bits (160), Expect = 9.270e-8
Identity = 57/187 (30.48%), Postives = 88/187 (47.06%), Query Frame = 1 
Query:  292 LEEAGDVKEQLRRSEKAHAELLDRCLSLEGEVQQIAPMRKQLEGYKREKTALQLSVKSLEAEVAARIEASDVMESRLGQLAAGTQSARDEAARLQADLRQSLPSPSSSSAAXXXXXXXXXXXGVSELNPQLTEELKRLRHERDVLAAAMDATAVARVEALAAETEDARRLADACHVQLMAARAELHS 852
            +E  GD  E L+R EKAHA  +D+C+SLE ++  + P+++QLE Y+   T  + +++    ++    E S  +E    QL   T   + EA  L   L++                      G+SELNP+L EE+K LR E   L        V  V+ L    +D +RLAD    Q    ++EL +
Sbjct:  335 IESIGDAHEALQREEKAHAAAVDKCVSLENDLAILKPLKRQLEEYRVRATNAEAALEESREDLRRMREKSSGLEGAHIQLREATTQHQMEANALSRRLQEG--------TGKLGDVGNALGKGMSELNPELLEEIKMLRSEYSRLKEFESKREVDAVQRLEETLDDTKRLADRYKEQFFHHKSELEN 513
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BLAST of mRNA_P-wetherbeei_contig12917.1.1 vs. uniprot
Match: A0A7S3V7Q8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7Q8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.030e-7
Identity = 62/204 (30.39%), Postives = 101/204 (49.51%), Query Frame = 1 
Query:  292 LEEAGDVKEQLRRSEKAHAELLDRCLSLEGEVQQIAPMRKQLEGYKREKTALQLSVKSLEAEVAARIEASDVMESRLGQLAAGTQSARDEAARLQADLRQSLPSPSSSSAAXXXXXXXXXXXGVSELNPQLTEELKRLRHER---DVLAAAMDATAVARVEALAAETEDARRLADACHVQLMAARAELHS----MAARLQRSEE 882
            LE+ GDV + L+  EKAH++ + +CL+LE ++  + P+++QLE YK   T  ++ +   E E+    E    +     +L   T   ++E+  L+  ++Q                      G+SELNP+L EEL RLR+E     V AA  +  +V R+E    + +DA RL+     Q +A +  L S    + A LQR +E
Sbjct:  558 LEQLGDVSKALQNEEKAHSDAVAKCLNLENQLAALVPLKRQLEDYKTRATDAEVRLVDYEDEIKRLEELGGDITGLNKELKLATFRQQEESEDLRRKMQQH------EETVTIPTETHAVGGGISELNPELKEELLRLRNENARLKVFAAKREDDSVQRLEE---KLDDAIRLSAKFKEQFLATKKTLDSTQNQLGASLQREQE 752
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BLAST of mRNA_P-wetherbeei_contig12917.1.1 vs. uniprot
Match: A0A1Z5K9U4_FISSO (Laminin, alpha 3/5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9U4_FISSO)

HSP 1 Score: 63.9 bits (154), Expect = 5.140e-7
Identity = 62/201 (30.85%), Postives = 98/201 (48.76%), Query Frame = 1 
Query:  292 LEEAGDVKEQLRRSEKAHAELLDRCLSLEGEVQQIAPMRKQLEGYKREKTALQLSVKSLEAEVAARIEASDVMESRLGQLAAGTQSARDEA----ARLQADLRQSLPSPSSSSAAXXXXXXXXXXXGVSELNPQLTEELKRLRHERDVLAAAMDATAVARVEALAAETEDARRLADACHVQLMAARAELHSMAARLQRSEE 882
            + E  D K+ LRR ++AH   +D  + LE E+Q +AP+R+QLE YK         V+++EAEV   +E  D +E    +  A  QS  +E+    A LQ +    L       A            G++ELNP++ EEL RLR+E   L    +  +   V+ +A   +D +RL D    + ++ + +L      L +SEE
Sbjct:  401 INELQDTKDALRREQEAHGNAVDEIVRLESELQTLAPLRRQLEDYK---------VRAIEAEVKL-VETQDALEKL--EKKANDQSHVNESLWKGAMLQKEQMDELRRRLQEDAKAPSEPTTGVGEGINELNPEVMEELYRLRNENKKLREFAEKRSNDSVQKMADTLDDTKRLGDKYKKEYLSTKDKLEKALQTLFQSEE 589
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BLAST of mRNA_P-wetherbeei_contig12917.1.1 vs. uniprot
Match: A0A7S2U7B9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7B9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.160e-5
Identity = 45/144 (31.25%), Postives = 70/144 (48.61%), Query Frame = 1 
Query:  292 LEEAGDVKEQLRRSEKAHAELLDRCLSLEGEVQQIAPMRKQLEGYKREKTALQLSVKSLEAEVAARIEASDVMESRLGQLAAGT---QSARDEAARLQADLRQSLPSPSSSSAAXXXXXXXXXXXGVSELNPQLTEELKRLRHE 714
            LEE  D KE L R E+AH+ L+ +CL LE E+  + P+++QLE YK      ++ V   E ++       + +      L  G    Q    E ++   +   S P  + S+             G+SELNP+L EE++RLR+E
Sbjct:  185 LEEMNDTKEALVREEEAHSALISKCLQLENELTALNPLKRQLEEYKTRAVDAEVKVTEYEEDIRTLKSRQETLVGMNEDLHLGAKIHQEVNQEMSKRLVEEANSNPVENLSTVGE----------GMSELNPELMEEVQRLRNE 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12917.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2P099_9STRA7.180e-932.43Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A6H5L192_9PHAE1.860e-831.82HOOK domain-containing protein n=2 Tax=Ectocarpus ... [more]
K0T9J6_THAOC9.270e-830.48Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3V7Q8_9STRA3.030e-730.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5K9U4_FISSO5.140e-730.85Laminin, alpha 3/5 n=2 Tax=Fistulifera solaris Tax... [more]
A0A7S2U7B9_9STRA5.160e-531.25Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12917contigP-wetherbeei_contig12917:106..1914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G849
PFAMsHOOK
Model size1467
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.16e-12
EggNOG OGs2APQW@1|root,2RZH8@2759|Eukaryota
Cds size1467
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185966.3606699-CDS-P-wetherbeei_contig12917:105..4671683185966.3606699-CDS-P-wetherbeei_contig12917:105..467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12917 106..467 +
1683185966.3711042-CDS-P-wetherbeei_contig12917:661..7541683185966.3711042-CDS-P-wetherbeei_contig12917:661..754Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12917 662..754 +
1683185966.3806767-CDS-P-wetherbeei_contig12917:902..19141683185966.3806767-CDS-P-wetherbeei_contig12917:902..1914Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12917 903..1914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12917.1.1prot_P-wetherbeei_contig12917.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12917 106..1914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12917.1.1

>prot_P-wetherbeei_contig12917.1.1 ID=prot_P-wetherbeei_contig12917.1.1|Name=mRNA_P-wetherbeei_contig12917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=489bp
RREASLERRVRSLGDRAAAAALRGDMAALDADGEAAAAHAAEVDALRGRL
AAAQAEAAVLRPLRAAEAALRDELDCLRPLEQRATALEEALARCRTRLEE
AGDVKEQLRRSEKAHAELLDRCLSLEGEVQQIAPMRKQLEGYKREKTALQ
LSVKSLEAEVAARIEASDVMESRLGQLAAGTQSARDEAARLQADLRQSLP
SPSSSSAAPSAAAVAALGAGVSELNPQLTEELKRLRHERDVLAAAMDATA
VARVEALAAETEDARRLADACHVQLMAARAELHSMAARLQRSEEESAARA
ADAAAWRERHGAAVEDGATRLATAMWAAAAEAAAAEARWRQRQKASDAAA
AEREARLYAAVLLESQRGRAALALRSAGAEALENDLRVLLDATQEEARAA
AQAAAAALDAQRSAAASEMAAAWRSAAEAKEVAAQAAAALAAQRVASEAA
LAAARAEAHRALENASAAMAAQRQKAAAEIGAEREVRAA
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mRNA from alignment at P-wetherbeei_contig12917:106..1914+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12917.1.1 ID=mRNA_P-wetherbeei_contig12917.1.1|Name=mRNA_P-wetherbeei_contig12917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1809bp|location=Sequence derived from alignment at P-wetherbeei_contig12917:106..1914+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGGAGGCCTCGCTGGAACGGCGCGTCCGCAGCCTCGGCGACCGCGC
CGCCGCCGCCGCCCTCCGCGGCGACATGGCCGCTCTCGACGCCGACGGCG
AGGCCGCCGCCGCCCACGCCGCTGAGGTCGACGCTCTGCGCGGCCGACTG
GCGGCGGCGCAGGCCGAAGCGGCGGTGCTGCGGCCGCTGCGGGCGGCGGA
GGCGGCTCTGCGAGACGAGCTTGACTGCCTGCGGCCGCTGGAACAGCGGG
CGACGGCGCTGGAGGAGGCACTGGCGCGGTGCCGGACGCGGCTGGAGGAA
GCCGGCGACGTAAAAGAGCAACTGCGACGCAGCGAGAAGGCGCACGCCGA
GCTCCTCGACAGGTGCGGTGTTTTGATATTGATGCGGTGCTTTTGTCGTT
CATTGTGAAATGCATCAGAGCGAGTACAAGAAGAACGAATGGGGGGCCGG
ATTGGCTAACTGCGAATCTGGAAGCACGGTTCGGATCGTCGCCTAAGGAC
CAAGCAGCGCCCCTAATCCCCCTTTCCTCGTGCAATGAACCTGTGCTGGA
CGGCAGGTGTCTTTCTTTGGAGGGGGAGGTGCAGCAGATTGCGCCTATGC
GAAAGCAGCTGGAGGGCTACAAACGGGAGAAGACCGCCCTCCAACTCAGG
TGCAGCCGAAAGCCGCTGGTCCATCTGATGCGCTTCCGTCGATCCTAATA
CTCTTCTCTCTGTAACGGTAGAAACTAGATTCCATTTGCGCTCCCTAATT
TTCCGCCACTTCTTTCCATCGTTATGCTGCCTCCATCTCCGCCGCAGCGT
CAAGAGCCTGGAGGCCGAGGTTGCCGCACGGATCGAGGCATCGGACGTCA
TGGAAAGCCGCCTCGGGCAGCTGGCTGCCGGCACCCAGAGCGCCCGCGAC
GAGGCCGCCCGCCTACAGGCCGACCTCCGCCAGTCCCTGCCTTCTCCCTC
CTCCTCTTCCGCCGCCCCCTCCGCCGCCGCGGTTGCAGCGCTGGGCGCGG
GCGTGTCAGAGCTCAACCCGCAGCTGACGGAAGAATTGAAGCGGCTGCGG
CACGAGCGGGACGTGCTGGCGGCGGCAATGGACGCCACGGCGGTGGCCCG
CGTCGAGGCGCTGGCGGCGGAGACGGAGGACGCGCGGCGGCTGGCGGATG
CCTGCCACGTCCAGCTGATGGCGGCTCGAGCGGAGCTGCATAGCATGGCA
GCGCGGCTGCAGCGGAGCGAGGAGGAGAGTGCGGCACGCGCGGCCGATGC
GGCGGCGTGGCGGGAGCGCCACGGCGCCGCGGTAGAGGACGGCGCAACGC
GGCTGGCAACGGCGATGTGGGCGGCGGCGGCAGAGGCGGCGGCGGCGGAA
GCCCGCTGGCGGCAGCGGCAAAAGGCGTCGGACGCGGCGGCGGCGGAGCG
CGAGGCCCGGCTGTACGCCGCCGTGCTGCTGGAGTCGCAGCGGGGCCGGG
CGGCGCTCGCGCTGCGCTCCGCAGGCGCAGAGGCCCTCGAGAATGATCTA
CGGGTGCTGCTTGATGCGACGCAGGAAGAGGCGCGGGCGGCGGCGCAGGC
CGCGGCGGCGGCGTTGGATGCACAGCGCAGCGCAGCGGCGAGCGAGATGG
CGGCGGCGTGGCGTTCCGCGGCTGAAGCCAAAGAGGTGGCGGCGCAGGCC
GCGGCTGCGCTGGCGGCGCAGCGCGTTGCTTCAGAAGCGGCGCTCGCTGC
GGCCCGGGCAGAGGCGCACAGGGCACTCGAAAATGCGTCGGCGGCGATGG
CCGCCCAGCGCCAGAAGGCGGCGGCAGAGATCGGAGCAGAGCGGGAGGTC
CGTGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12917:106..1914+

>mRNA_P-wetherbeei_contig12917.1.1 ID=mRNA_P-wetherbeei_contig12917.1.1|Name=mRNA_P-wetherbeei_contig12917.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1467bp|location=Sequence derived from alignment at P-wetherbeei_contig12917:106..1914+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGGAGGCCTCGCTGGAACGGCGCGTCCGCAGCCTCGGCGACCGCGC
CGCCGCCGCCGCCCTCCGCGGCGACATGGCCGCTCTCGACGCCGACGGCG
AGGCCGCCGCCGCCCACGCCGCTGAGGTCGACGCTCTGCGCGGCCGACTG
GCGGCGGCGCAGGCCGAAGCGGCGGTGCTGCGGCCGCTGCGGGCGGCGGA
GGCGGCTCTGCGAGACGAGCTTGACTGCCTGCGGCCGCTGGAACAGCGGG
CGACGGCGCTGGAGGAGGCACTGGCGCGGTGCCGGACGCGGCTGGAGGAA
GCCGGCGACGTAAAAGAGCAACTGCGACGCAGCGAGAAGGCGCACGCCGA
GCTCCTCGACAGGTGTCTTTCTTTGGAGGGGGAGGTGCAGCAGATTGCGC
CTATGCGAAAGCAGCTGGAGGGCTACAAACGGGAGAAGACCGCCCTCCAA
CTCAGCGTCAAGAGCCTGGAGGCCGAGGTTGCCGCACGGATCGAGGCATC
GGACGTCATGGAAAGCCGCCTCGGGCAGCTGGCTGCCGGCACCCAGAGCG
CCCGCGACGAGGCCGCCCGCCTACAGGCCGACCTCCGCCAGTCCCTGCCT
TCTCCCTCCTCCTCTTCCGCCGCCCCCTCCGCCGCCGCGGTTGCAGCGCT
GGGCGCGGGCGTGTCAGAGCTCAACCCGCAGCTGACGGAAGAATTGAAGC
GGCTGCGGCACGAGCGGGACGTGCTGGCGGCGGCAATGGACGCCACGGCG
GTGGCCCGCGTCGAGGCGCTGGCGGCGGAGACGGAGGACGCGCGGCGGCT
GGCGGATGCCTGCCACGTCCAGCTGATGGCGGCTCGAGCGGAGCTGCATA
GCATGGCAGCGCGGCTGCAGCGGAGCGAGGAGGAGAGTGCGGCACGCGCG
GCCGATGCGGCGGCGTGGCGGGAGCGCCACGGCGCCGCGGTAGAGGACGG
CGCAACGCGGCTGGCAACGGCGATGTGGGCGGCGGCGGCAGAGGCGGCGG
CGGCGGAAGCCCGCTGGCGGCAGCGGCAAAAGGCGTCGGACGCGGCGGCG
GCGGAGCGCGAGGCCCGGCTGTACGCCGCCGTGCTGCTGGAGTCGCAGCG
GGGCCGGGCGGCGCTCGCGCTGCGCTCCGCAGGCGCAGAGGCCCTCGAGA
ATGATCTACGGGTGCTGCTTGATGCGACGCAGGAAGAGGCGCGGGCGGCG
GCGCAGGCCGCGGCGGCGGCGTTGGATGCACAGCGCAGCGCAGCGGCGAG
CGAGATGGCGGCGGCGTGGCGTTCCGCGGCTGAAGCCAAAGAGGTGGCGG
CGCAGGCCGCGGCTGCGCTGGCGGCGCAGCGCGTTGCTTCAGAAGCGGCG
CTCGCTGCGGCCCGGGCAGAGGCGCACAGGGCACTCGAAAATGCGTCGGC
GGCGATGGCCGCCCAGCGCCAGAAGGCGGCGGCAGAGATCGGAGCAGAGC
GGGAGGTCCGTGCCGCC
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