mRNA_P-wetherbeei_contig12902.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12902.1.1
Unique NamemRNA_P-wetherbeei_contig12902.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12902.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12902contigP-wetherbeei_contig12902:742..1246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size427
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.903473-CDS-P-wetherbeei_contig12902:741..7881683185965.903473-CDS-P-wetherbeei_contig12902:741..788Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12902 742..788 -
1683185965.9107797-CDS-P-wetherbeei_contig12902:866..12211683185965.9107797-CDS-P-wetherbeei_contig12902:866..1221Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12902 867..1221 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.9185805-UTR-P-wetherbeei_contig12902:1221..12461683185965.9185805-UTR-P-wetherbeei_contig12902:1221..1246Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12902 1222..1246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12902.1.1prot_P-wetherbeei_contig12902.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12902 742..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12902.1.1

>prot_P-wetherbeei_contig12902.1.1 ID=prot_P-wetherbeei_contig12902.1.1|Name=mRNA_P-wetherbeei_contig12902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MALEGGGDGRGRGDGRGGSNGRGSGNGRGGGGGRGGGVGGRGDNDGRGDG
GIGGAGSNGRADSADSRAVVRLPDPAKPPTAVVVRRSGDGGKSDGHAGSS
GPSGPTAVAARDSSGRGTAKPAAVEARNSGGDSG
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mRNA from alignment at P-wetherbeei_contig12902:742..1246-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12902.1.1 ID=mRNA_P-wetherbeei_contig12902.1.1|Name=mRNA_P-wetherbeei_contig12902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=505bp|location=Sequence derived from alignment at P-wetherbeei_contig12902:742..1246- (Phaeothamnion wetherbeei SAG_119_79)
CGGCGGGCCGCCGCGCAAGGGTTCTATGGCTCTGGAGGGCGGCGGGGACG
GCCGTGGCCGTGGCGACGGCCGCGGTGGCAGTAATGGCCGCGGCAGCGGC
AACGGTCGCGGCGGTGGTGGCGGCCGTGGCGGTGGTGTTGGCGGCCGTGG
CGACAATGATGGCCGTGGCGATGGCGGCATCGGCGGTGCCGGTAGCAACG
GCCGTGCTGACAGCGCAGACAGCAGAGCGGTGGTGAGGCTGCCGGATCCA
GCCAAGCCTCCCACCGCGGTCGTTGTGCGGAGAAGCGGTGATGGCGGCAA
AAGCGATGGCCACGCGGGAAGCTCGGGTCCAAGCGGGCCCACAGCAGTTG
CGGCGAGGGACAGCAGCGGCCGCGGCACCGGCGGCCCCGGTGGCGGCGGC
GGCGGTGGCCGCATTAGCGGCAGGGAAATCCGCACGGCGGTGGGGCCGCC
GGATTCAGCCAAGCCTGCTGCAGTTGAAGCGCGGAATAGCGGTGGTGACA
GTGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12902:742..1246-

>mRNA_P-wetherbeei_contig12902.1.1 ID=mRNA_P-wetherbeei_contig12902.1.1|Name=mRNA_P-wetherbeei_contig12902.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig12902:742..1246- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTCTGGAGGGCGGCGGGGACGGCCGTGGCCGTGGCGACGGCCGCGG
TGGCAGTAATGGCCGCGGCAGCGGCAACGGTCGCGGCGGTGGTGGCGGCC
GTGGCGGTGGTGTTGGCGGCCGTGGCGACAATGATGGCCGTGGCGATGGC
GGCATCGGCGGTGCCGGTAGCAACGGCCGTGCTGACAGCGCAGACAGCAG
AGCGGTGGTGAGGCTGCCGGATCCAGCCAAGCCTCCCACCGCGGTCGTTG
TGCGGAGAAGCGGTGATGGCGGCAAAAGCGATGGCCACGCGGGAAGCTCG
GGTCCAAGCGGGCCCACAGCAGTTGCGGCGAGGGACAGCAGCGGCCGCGG
CACCGCCAAGCCTGCTGCAGTTGAAGCGCGGAATAGCGGTGGTGACAGTG
GT
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