mRNA_P-wetherbeei_contig12894.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12894.1.1
Unique NamemRNA_P-wetherbeei_contig12894.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: D7FL27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL27_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 2.500e-86
Identity = 131/218 (60.09%), Postives = 163/218 (74.77%), Query Frame = 1
Query:   13 TKHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPESFMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAALAGGGKVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHLTPHARTTLGQFLSQQ 666
            TK RFCGG+ CLRCSEQCALR K A + GLH  WI+  I+ MQRPS+RL+ TY I+  F   G+  + NLTEPGEHP+CGDGLE+ASGFPYLPE+FM  G++  NF+WEDMT P + LL DI+RV  + L  GGK+AVHCHAGYGRTGLVIAS+LV    +   +A+ LVR +RP S+QT+AQ  +V +FA+  RG  ++YH T HAR TLGQ L+QQ
Sbjct:  207 TKCRFCGGRLCLRCSEQCALRCKGAAVNGLHSHWISDSIIGMQRPSSRLIKTYDIVGQFKRKGVTAIFNLTEPGEHPHCGDGLEKASGFPYLPETFMREGISVYNFSWEDMTTPSMALLSDIIRVALSCLRTGGKIAVHCHAGYGRTGLVIASILVMMNNLPPQQAVALVREKRPTSLQTNAQVSMVGEFANFVRGVRVVYHFTDHARVTLGQHLAQQ 424          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: A0A024G075_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G075_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.700e-68
Identity = 121/229 (52.84%), Postives = 150/229 (65.50%), Query Frame = 1
Query:   16 KHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPES-FMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAALAGG-GKVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHLT-PHARTTLGQFLSQQGFFLHGDES 693
            K RFCGG  C RCSE  AL   ++PI GLH DWIT RIL M RPS+RL+  Y I D F  H I  V NLT PGEHP+CGDGL  +SGFPY PE+ FM + + F NF WEDMTVP L L+ DIV+V  + L  G  KVAVHCHAGYGRTGL IA +L+   G++ ++AI +VR  RPGS+QTS QA  VH+F +    + + + L   H   T+ Q + QQ   +HG  +
Sbjct:   17 KCRFCGGPQCKRCSENAALAKTDSPIPGLHADWITDRILGMMRPSSRLIKQYQITDQFHRHHITAVFNLTIPGEHPFCGDGLG-SSGFPYDPENDFMAQKIQFYNFGWEDMTVPPLSLMMDIVKVMTSMLQDGMQKVAVHCHAGYGRTGLAIACVLLFMHGISPERAIHIVRRDRPGSIQTSGQATFVHEFCEYMNSAKVTFALPFIHEPFTIAQAIEQQNRLMHGTHT 244          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: A0A835ZAS9_9STRA (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS9_9STRA)

HSP 1 Score: 228 bits (581), Expect = 5.960e-66
Identity = 118/225 (52.44%), Postives = 149/225 (66.22%), Query Frame = 1
Query:  169 YGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPESFMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAALAGGGKVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRT----------------------------RRPGSVQTSAQAEIVHKFADMCRGSAIIYHLTPHARTTLGQFLSQQGFFLHGDESLRLRWVPKPLSLVARMLTTLAA 759
            YG++D F   GI +VLNLTEPGEHP+CGDGLE +SGFPYLPE+ M  G+ F NFAWEDMT P L LL +IVRV  + +  GGK AVHCHAGYGRTGLVIAS LV+++ + AD+A+ +VR+                            +RPGSVQT AQ +IV +FA+  R + ++YH + HA  TLGQ+L QQ F L G     LRWVP+P++L ARML  L+A
Sbjct:   46 YGLMDKFKAAGITVVLNLTEPGEHPHCGDGLEASSGFPYLPETLMAAGIQFVNFAWEDMTTPPLALLANIVRVLVSHVGLGGKAAVHCHAGYGRTGLVIASSLVYSQNLTADEAVAIVRSILVRVSSALSRPNECMRTCVIGHSAPSRKRPGSVQTPAQQDIVARFAEFVRETRVVYHFSEHATVTLGQYLQQQSFLL-GPGDTALRWVPRPIALAARMLQALSA 269          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: F0W109_9STRA (Uncharacterized protein AlNc14C5G789 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W109_9STRA)

HSP 1 Score: 217 bits (553), Expect = 2.110e-63
Identity = 120/246 (48.78%), Postives = 149/246 (60.57%), Query Frame = 1
Query:   16 KHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPE-SFMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAALAGGGK----------------VAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHLT-PHARTTLGQFLSQQGFFLHGDESLR 699
            K RFCGG  C RCSE  AL   ++PI GLH DW+T RIL M RPS+RL+  Y IID F  H I  V NLT PGEHP+CGDGL  +SGFPY PE  FM + + F NF WEDMTVP L L+ DIV+V  + L  G +                VAVHCHAGYGRTGL IA  L+   G++ ++AI +VR  RPGS+QT +QA  V +F +    + + + L   H   TL Q + QQ   +HG  + R
Sbjct:   17 KCRFCGGPQCKRCSEHAALAKIDSPISGLHADWVTDRILGMMRPSSRLIKQYHIIDQFHRHRITAVFNLTIPGEHPFCGDGLG-SSGFPYDPEIDFMAQKIQFYNFGWEDMTVPTLSLMMDIVKVMTSMLQDGMQKVGAVFIPSKVLNFCQVAVHCHAGYGRTGLAIACALIFMHGISPERAIHIVRRDRPGSIQTPSQAIFVREFCEYMSCARLTFALPFIHEPFTLSQAIEQQNRLIHGTHTGR 261          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: K3WRR2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRR2_GLOUD)

HSP 1 Score: 219 bits (557), Expect = 4.280e-63
Identity = 114/229 (49.78%), Postives = 144/229 (62.88%), Query Frame = 1
Query:   16 KHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPES-FMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAALAGGG-KVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHLTP-HARTTLGQFLSQQGFFLHGDES 693
            K R CGG  C RCSE  AL    +P+ GLH DW+T RIL M RPS+RL+  Y I   F +  I  V NLT PGEHPYCGDGL  ASGFPY PE   M   + F NF WEDMT P LP + DIV+V A+ L  G  K++VHCHAGYGRTGL IA +L+    +  ++AI +VR  RPGS+QTSAQA+ V  F +    S +++ L   H   T+ + +  Q   +HG++S
Sbjct:   17 KCRLCGGAKCKRCSESAALAKTNSPVLGLHADWVTNRILGMMRPSSRLMKDYQIAQQFQKLRISAVFNLTLPGEHPYCGDGLA-ASGFPYDPEKDLMVENIHFYNFGWEDMTTPTLPFMMDIVKVMASILQDGHQKISVHCHAGYGRTGLAIACVLIFMHNIPPEQAIKIVRRDRPGSIQTSAQAKFVRSFHEYINTSKVVFALPYIHDHFTIAEMIEHQNRMVHGEKS 244          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: A0A1V9Z9Y6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9Y6_9STRA)

HSP 1 Score: 213 bits (543), Expect = 6.410e-63
Identity = 117/228 (51.32%), Postives = 143/228 (62.72%), Query Frame = 1
Query:   16 KHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPES-FMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAALAGGGKVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHL-TPHARTTLGQFLSQQGFFLHGDES 693
            K RFCGG  C RCSE  AL   ++PI+GLH DW+T  IL M RPSTRL+ TY I + F    I  V NLT PGEHP+CGDG    SGFPY PE+  M + + F NF WEDMT P + L+ DI  V A+ LA G KVAVHCHAGYGRTGL IA  LV   G++A +AI +VR  RPGS+QT  Q   V +F D  R S +++ + T H R +L   L ++    H   S
Sbjct:   15 KCRFCGGPKCKRCSEYAALLKIDSPIKGLHADWVTDSILGMMRPSTRLMQTYRIAEQFTRLKIKAVFNLTIPGEHPHCGDG-NGPSGFPYDPETDLMAQKIEFYNFGWEDMTSPNVVLMLDITTVMASVLAQGYKVAVHCHAGYGRTGLAIACTLVFQHGISAQEAIQIVRRGRPGSIQTHGQVAFVGRFHDHLRQSKLVFAIPTIHDRFSLQIALERERQQFHATPS 241          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: A0A0P1ABQ2_PLAHL (Protein tyrosine phosphatase domain-containing protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABQ2_PLAHL)

HSP 1 Score: 216 bits (551), Expect = 3.870e-62
Identity = 113/231 (48.92%), Postives = 146/231 (63.20%), Query Frame = 1
Query:   16 KHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPES-FMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAALAGGG-KVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHLTP-HARTTLGQFLSQQGFFLHGDESLR 699
            K R CGG  C RCSE  AL   ++P++GLH DW+    LAM RPS+RL++ Y I+  F    I  V NLT PGEHPYCGDGL   SGFPY PE   M R + F NF WEDMT P L L+ DIV+V A+ L  G  ++AVHCHAGYGRTG+ IA  L+    ++A+ AI LVR  RPGS+QTS Q + VH F      + I++ L   H + TL + +  Q   LHG+++++
Sbjct:   18 KCRLCGGARCKRCSESAALAKVDSPVKGLHADWVADCALAMMRPSSRLMNEYNIVQQFHLLNITAVFNLTLPGEHPYCGDGLG-TSGFPYDPEKDLMARNIQFYNFGWEDMTTPTLSLMMDIVKVIASVLLKGHHRIAVHCHAGYGRTGITIACALIFLHNISAELAIRLVRRDRPGSIQTSGQVQFVHDFHTYINAARIVFALPKIHDQFTLAETIEHQNRRLHGEDAVK 247          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: A0A6A3FGH6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FGH6_9STRA)

HSP 1 Score: 211 bits (536), Expect = 1.190e-61
Identity = 112/227 (49.34%), Postives = 140/227 (61.67%), Query Frame = 1
Query:   16 KHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPES-FMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAAL-AGGGKVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHLTP-HARTTLGQFLSQQGFFLHGD 687
            K R CGG  C RCSE  AL   ++P+RGLH DW+    LAM RPS+RL++ Y I + F +  I  V NLT PGEHPYCGDGL   SGFPY PE   M + + F NF WEDMT P L  + DIV+V A+ L  G  +VAVHCHAGYGRTG+ IA  L+    +  + AI LVR  RPGSVQT+ Q + VH F      + +++ L   H R TL + +  Q   LHG+
Sbjct:   17 KCRLCGGARCKRCSESAALAKSDSPVRGLHSDWVADYALAMMRPSSRLMNEYKIAEQFQKLNITAVFNLTLPGEHPYCGDGLGP-SGFPYDPEKDLMAQNIRFYNFGWEDMTTPTLSFMMDIVKVIASVLLTGHHRVAVHCHAGYGRTGITIACALIFLHNIPPELAIRLVRRDRPGSVQTAGQVQFVHDFHAYLNAARVVFALPKVHDRFTLAETVEHQNRRLHGE 242          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: D0MYX7_PHYIT (Uncharacterized protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0MYX7_PHYIT)

HSP 1 Score: 211 bits (536), Expect = 3.850e-60
Identity = 113/226 (50.00%), Postives = 140/226 (61.95%), Query Frame = 1
Query:   16 KHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPES-FMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAAL-AGGGKVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHL-TPHARTTLGQFLSQQGFFLHG 684
            K R CGG  C RCSE  AL  +++P++GLH DW+    LAM RPS+RL++ Y I + F +  I  V NLT PGEHPYCGDGL   SGFPY PE   M   + F NF WEDMT P L  + DIV+V A+ L  G  KVAVHCHAGYGRTG+ IA  L+    +  + AI LVR  RPGSVQT+ Q + VH F      + +++ L T H R TL + +  Q   LHG
Sbjct:   17 KCRLCGGLRCKRCSESAALAKQDSPVKGLHADWVADCALAMMRPSSRLMNEYKIAEQFHKLNITAVFNLTLPGEHPYCGDGLG-TSGFPYDPEKDLMAENIRFYNFGWEDMTTPALAFMMDIVKVIASVLLTGRHKVAVHCHAGYGRTGIAIACALIFLHNIPPELAIRLVRRDRPGSVQTAGQVQFVHDFHAYLNAARVVFALPTIHDRFTLAETVEHQNRRLHG 241          
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Match: G5AEU0_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AEU0_PHYSP)

HSP 1 Score: 208 bits (529), Expect = 7.180e-60
Identity = 112/227 (49.34%), Postives = 138/227 (60.79%), Query Frame = 1
Query:   16 KHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPSTRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPES-FMDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAAL-AGGGKVAVHCHAGYGRTGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRGSAIIYHLTP-HARTTLGQFLSQQGFFLHGD 687
            K R CGG  C RCSE  AL   ++P+RGLH DW+    LAM RPS+RL+  Y I + F +  I  V NLT PGEHPYCGDGL   SGFPY PE   M   + F NF WEDMT P L  + DIV+V A+ L  G  +VAVHCHAGYGRTG+ IA  L+    +  + AI LVR  RPGSVQT+ QA+ VH F      + +++ L   H   TL + +  Q   LHG+
Sbjct:   17 KCRLCGGARCKRCSESAALAKTDSPVRGLHADWVADCALAMMRPSSRLMSKYKIAEQFHKLNITAVFNLTLPGEHPYCGDGLGP-SGFPYDPEKDLMAENIRFYNFGWEDMTTPTLSFMMDIVKVIASVLLTGHHRVAVHCHAGYGRTGITIACALIFLHNIPPELAIRLVRRDRPGSVQTAGQAQFVHDFHAYLNAARVVFALPKIHDLFTLAETVEHQNRRLHGE 242          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12894.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL27_ECTSI2.500e-8660.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024G075_9STRA2.700e-6852.84Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A835ZAS9_9STRA5.960e-6652.44TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
F0W109_9STRA2.110e-6348.78Uncharacterized protein AlNc14C5G789 n=1 Tax=Albug... [more]
K3WRR2_GLOUD4.280e-6349.78Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9Z9Y6_9STRA6.410e-6351.32Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A0P1ABQ2_PLAHL3.870e-6248.92Protein tyrosine phosphatase domain-containing pro... [more]
A0A6A3FGH6_9STRA1.190e-6149.34Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
D0MYX7_PHYIT3.850e-6050.00Uncharacterized protein n=3 Tax=Phytophthora infes... [more]
G5AEU0_PHYSP7.180e-6049.34Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12894contigP-wetherbeei_contig12894:68..1450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FL27
Preferred namePTPDC1
PFAMsDSPc
Model size792
Max annot lvl2759|Eukaryota
KEGG koko:K18078
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0120031,GO:0120036,GO:0140096,GO:1901564
Exons3
Evalue4.1e-87
EggNOG OGsCOG2453@1|root,KOG1720@2759|Eukaryota
Descriptionprotein tyrosine/serine/threonine phosphatase activity
Cds size792
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.3070884-CDS-P-wetherbeei_contig12894:67..2981683185965.3070884-CDS-P-wetherbeei_contig12894:67..298Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12894 68..298 -
1683185965.3252642-CDS-P-wetherbeei_contig12894:674..10411683185965.3252642-CDS-P-wetherbeei_contig12894:674..1041Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12894 675..1041 -
1683185965.3373528-CDS-P-wetherbeei_contig12894:1256..14501683185965.3373528-CDS-P-wetherbeei_contig12894:1256..1450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12894 1257..1450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12894.1.1prot_P-wetherbeei_contig12894.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12894 68..1450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12894.1.1

>prot_P-wetherbeei_contig12894.1.1 ID=prot_P-wetherbeei_contig12894.1.1|Name=mRNA_P-wetherbeei_contig12894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=264bp
MLAWTKHRFCGGKACLRCSEQCALRHKEAPIRGLHCDWITPRILAMQRPS
TRLLDTYGIIDAFVEHGIGLVLNLTEPGEHPYCGDGLEEASGFPYLPESF
MDRGVAFANFAWEDMTVPLLPLLRDIVRVGAAALAGGGKVAVHCHAGYGR
TGLVIASLLVHTEGMAADKAIDLVRTRRPGSVQTSAQAEIVHKFADMCRG
SAIIYHLTPHARTTLGQFLSQQGFFLHGDESLRLRWVPKPLSLVARMLTT
LAAVAAHGTAAALA
back to top

mRNA from alignment at P-wetherbeei_contig12894:68..1450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12894.1.1 ID=mRNA_P-wetherbeei_contig12894.1.1|Name=mRNA_P-wetherbeei_contig12894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1383bp|location=Sequence derived from alignment at P-wetherbeei_contig12894:68..1450- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGGCTTGGACGAAACACAGGTTCTGCGGTGGCAAAGCTTGCTTGCG ATGCTCCGAACAATGTGCATTGCGGCACAAAGAGGCGCCGATCCGCGGGC TCCATTGCGACTGGATCACACCACGCATCCTCGCCATGCAGCGCCCCAGC ACGAGGCTCCTCGATACGTACGGCATCATCGACGCCTTTGTAGAGTAAGC ATCCCCAATTCTGAAAAGTTTTAGTGTTCAGGGTACCAAGTATGCTGCCG CACTTTCGGTCTCGTTTGGCAAGACGTGCCTTTCCCGCCCGTCTGTGCCT CGCAACGCCGCTGCCGCTTCGTTTCCGCGCCCCCCTCGTGCTCCTCCTCC CACCGTTCAACTTATGCAACCAATGATTGCTCTTTCTGGCCGCCCCGCCC GCCTTTAAGGCACGGCATCGGCTTAGTGCTGAACCTGACGGAGCCCGGCG AGCACCCCTACTGCGGCGACGGCCTCGAGGAAGCCAGTGGCTTCCCCTAC CTGCCCGAGTCCTTCATGGACCGCGGCGTTGCCTTCGCAAACTTCGCTTG GGAGGACATGACCGTGCCGCTGCTGCCGCTCCTCCGCGACATCGTCCGCG TCGGCGCAGCAGCCCTCGCCGGCGGCGGCAAAGTCGCCGTGCACTGCCAC GCTGGCTACGGGCGTACGGGGCTGGTGATCGCCAGCCTGTTGGTGCACAC AGAAGGCATGGCGGCAGACAAGGCCATCGACCTGGTGCGGACGCGGCGCC CGGGGAGTGTGCAGACTTCCGCGCAGGTGAGGCTTGGGGGAGGTTGGCAA GACCAGTGGTATCACGCGTATCTTTGAGGGGTCGCCGGTGCCTTCGGCTT GGAAAGAGAGGAATGGACCGATTCGCTCGAACGCCCTAGATGATCTGCTT TGTGTTCATACGCCGTGAAGAGATGTACTTGGAGGTAAAAGCCAGCACGT CAAAGAGCAGTTCTCTCATTGCTGTCAACTCGGTCGGCTCGTTGTTGCTT TCCTGTTCACAGGTATTGCCGCCCCCTTGTCTTCCACTGTTTTCTTTTCT CTTTCCTTTGCGCGCCGGATACCCGTGAATTACCTCATCGTGTTTTATCT TCCCGATATTAACGCTTTACTTTCCCCCTTTTTACTTCGTTCTTTCTCCC AGGCGGAAATTGTGCATAAGTTTGCCGACATGTGCCGCGGCAGCGCCATA ATCTACCACCTGACACCGCATGCGCGGACCACCCTGGGCCAGTTCCTGTC GCAACAGGGCTTCTTCCTCCATGGCGACGAGTCGCTGCGGCTCCGGTGGG TGCCGAAGCCGCTGTCCCTCGTTGCACGGATGCTGACAACGCTCGCCGCC GTCGCCGCGCACGGCACGGCGGCCGCGTTGGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig12894:68..1450-

>mRNA_P-wetherbeei_contig12894.1.1 ID=mRNA_P-wetherbeei_contig12894.1.1|Name=mRNA_P-wetherbeei_contig12894.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=792bp|location=Sequence derived from alignment at P-wetherbeei_contig12894:68..1450- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGGCTTGGACGAAACACAGGTTCTGCGGTGGCAAAGCTTGCTTGCG
ATGCTCCGAACAATGTGCATTGCGGCACAAAGAGGCGCCGATCCGCGGGC
TCCATTGCGACTGGATCACACCACGCATCCTCGCCATGCAGCGCCCCAGC
ACGAGGCTCCTCGATACGTACGGCATCATCGACGCCTTTGTAGAGCACGG
CATCGGCTTAGTGCTGAACCTGACGGAGCCCGGCGAGCACCCCTACTGCG
GCGACGGCCTCGAGGAAGCCAGTGGCTTCCCCTACCTGCCCGAGTCCTTC
ATGGACCGCGGCGTTGCCTTCGCAAACTTCGCTTGGGAGGACATGACCGT
GCCGCTGCTGCCGCTCCTCCGCGACATCGTCCGCGTCGGCGCAGCAGCCC
TCGCCGGCGGCGGCAAAGTCGCCGTGCACTGCCACGCTGGCTACGGGCGT
ACGGGGCTGGTGATCGCCAGCCTGTTGGTGCACACAGAAGGCATGGCGGC
AGACAAGGCCATCGACCTGGTGCGGACGCGGCGCCCGGGGAGTGTGCAGA
CTTCCGCGCAGGCGGAAATTGTGCATAAGTTTGCCGACATGTGCCGCGGC
AGCGCCATAATCTACCACCTGACACCGCATGCGCGGACCACCCTGGGCCA
GTTCCTGTCGCAACAGGGCTTCTTCCTCCATGGCGACGAGTCGCTGCGGC
TCCGGTGGGTGCCGAAGCCGCTGTCCCTCGTTGCACGGATGCTGACAACG
CTCGCCGCCGTCGCCGCGCACGGCACGGCGGCCGCGTTGGCG
back to top