mRNA_P-wetherbeei_contig12885.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12885.1.1
Unique NamemRNA_P-wetherbeei_contig12885.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12885.1.1 vs. uniprot
Match: UPI001BDF358B (tetratricopeptide repeat protein n=1 Tax=Bradyrhizobium sp. SRL28 TaxID=2836178 RepID=UPI001BDF358B)

HSP 1 Score: 53.5 bits (127), Expect = 6.210e-5
Identity = 28/80 (35.00%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:  145 YSNRGLMHAYKDEYDLALSDFDASIRLNSGNPFARLGRAMALRNKGDYNRALADVEAVLRL-------PLNSD-ERLSAL 360
            Y +RG+ H   +++D A+ +FDA+++++   P+AR  RA AL + GDY R   + E   RL       P+ +D +R++AL
Sbjct:    8 YVHRGIAHFNANQFDHAIVNFDAALKIDPNEPYARYNRATALLSLGDYARGFPEYEVAWRLFHWRGFGPVGNDIDRITAL 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12885.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001BDF358B6.210e-535.00tetratricopeptide repeat protein n=1 Tax=Bradyrhiz... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12885contigP-wetherbeei_contig12885:385..1023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog258594.RPA4505
PFAMsLprI,TPR_11,TPR_2
Model size639
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.41e-05
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1N7S8@1224|Proteobacteria,2U07D@28211|Alphaproteobacteria,3JSH1@41294|Bradyrhizobiaceae
DescriptionTetratricopeptide repeat
Cds size639
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185965.032183-CDS-P-wetherbeei_contig12885:384..10231683185965.032183-CDS-P-wetherbeei_contig12885:384..1023Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12885 385..1023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12885.1.1prot_P-wetherbeei_contig12885.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12885 385..1023 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12885.1.1

>prot_P-wetherbeei_contig12885.1.1 ID=prot_P-wetherbeei_contig12885.1.1|Name=mRNA_P-wetherbeei_contig12885.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=213bp
LPVASPAIAQRLSPEVVACSNFGGDPDRAIAACTRVIDRRITYNPDVAYS
NRGLMHAYKDEYDLALSDFDASIRLNSGNPFARLGRAMALRNKGDYNRAL
ADVEAVLRLPLNSDERLSALLQKAQTLRDQGAYDTARAQFEAVMAIYPTH
AWAYAGRASTFRAQGATARALADFDRALALEKFPAAYVGRAGLHESLGNL
EQAKADYAQALAL
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mRNA from alignment at P-wetherbeei_contig12885:385..1023-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12885.1.1 ID=mRNA_P-wetherbeei_contig12885.1.1|Name=mRNA_P-wetherbeei_contig12885.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig12885:385..1023- (Phaeothamnion wetherbeei SAG_119_79)
TTGCCGGTCGCATCACCGGCCATCGCGCAACGACTCAGTCCCGAAGTCGT
GGCGTGCTCGAACTTCGGCGGAGATCCCGACCGCGCCATCGCCGCTTGCA
CGCGCGTAATCGACAGGAGGATCACCTACAATCCCGACGTCGCCTACAGC
AACCGCGGCCTGATGCATGCCTACAAGGACGAGTACGATCTTGCGCTGAG
CGACTTCGACGCCTCCATCCGGCTGAATTCCGGCAACCCGTTTGCCCGCC
TGGGCCGGGCGATGGCACTGCGCAACAAGGGCGATTACAACCGCGCGCTC
GCGGATGTCGAAGCCGTCCTCAGGCTGCCGCTTAACAGCGACGAAAGACT
GAGCGCGCTGCTGCAGAAAGCCCAGACCCTGCGCGATCAGGGGGCCTACG
ATACCGCCAGGGCGCAATTCGAAGCGGTGATGGCCATATACCCCACGCAC
GCCTGGGCTTACGCCGGCCGCGCCAGCACGTTCCGCGCGCAGGGCGCGAC
GGCGCGCGCGCTCGCGGATTTCGATCGCGCGCTCGCGCTGGAGAAATTCC
CGGCTGCCTATGTCGGCCGCGCCGGACTGCATGAATCCCTGGGCAATCTC
GAGCAGGCGAAGGCCGACTATGCGCAGGCGCTGGCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12885:385..1023-

>mRNA_P-wetherbeei_contig12885.1.1 ID=mRNA_P-wetherbeei_contig12885.1.1|Name=mRNA_P-wetherbeei_contig12885.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=639bp|location=Sequence derived from alignment at P-wetherbeei_contig12885:385..1023- (Phaeothamnion wetherbeei SAG_119_79)
TTGCCGGTCGCATCACCGGCCATCGCGCAACGACTCAGTCCCGAAGTCGT
GGCGTGCTCGAACTTCGGCGGAGATCCCGACCGCGCCATCGCCGCTTGCA
CGCGCGTAATCGACAGGAGGATCACCTACAATCCCGACGTCGCCTACAGC
AACCGCGGCCTGATGCATGCCTACAAGGACGAGTACGATCTTGCGCTGAG
CGACTTCGACGCCTCCATCCGGCTGAATTCCGGCAACCCGTTTGCCCGCC
TGGGCCGGGCGATGGCACTGCGCAACAAGGGCGATTACAACCGCGCGCTC
GCGGATGTCGAAGCCGTCCTCAGGCTGCCGCTTAACAGCGACGAAAGACT
GAGCGCGCTGCTGCAGAAAGCCCAGACCCTGCGCGATCAGGGGGCCTACG
ATACCGCCAGGGCGCAATTCGAAGCGGTGATGGCCATATACCCCACGCAC
GCCTGGGCTTACGCCGGCCGCGCCAGCACGTTCCGCGCGCAGGGCGCGAC
GGCGCGCGCGCTCGCGGATTTCGATCGCGCGCTCGCGCTGGAGAAATTCC
CGGCTGCCTATGTCGGCCGCGCCGGACTGCATGAATCCCTGGGCAATCTC
GAGCAGGCGAAGGCCGACTATGCGCAGGCGCTGGCGCTG
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