mRNA_P-wetherbeei_contig1288.2.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1288.2.3
Unique NamemRNA_P-wetherbeei_contig1288.2.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1288.2.3 vs. uniprot
Match: A0A835YZF9_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.460e-16
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:  646 GVLTTFIEENGGGNITDTVYAGKISFSPQGLTHFELKIGCTPALLISAFRDDDFSVQQTSTTALAGL 846
            GVLT F+EENGG  I +TV AG+ +F PQGLTH ++ +GCTPA +I+A   DDF VQ  +TTAL GL
Sbjct:   78 GVLTAFVEENGGRTIENTVVAGEAAFFPQGLTHMQVNMGCTPATMIAALGSDDFGVQTITTTALEGL 144
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BLAST of mRNA_P-wetherbeei_contig1288.2.3 vs. uniprot
Match: A0A836CNU2_9STRA (RmlC-like cupin domain-containing protein n=7 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNU2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.790e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:  646 GVLTTFIEENGGGNITDTVYAGKISFSPQGLTHFELKIGCTPALLISAFRDDDFSVQQTSTTALAGL 846
            GVLT F+EENGG  I +T+  G+ +F PQGLTH ++ +GCTPA +I+A   DDF VQ  +TTAL GL
Sbjct:  129 GVLTAFVEENGGRTIENTIVTGEAAFFPQGLTHVQVNMGCTPATMIAALGSDDFGVQTITTTALKGL 195
[Close]
BLAST of mRNA_P-wetherbeei_contig1288.2.3 vs. uniprot
Match: A0A835Z488_9STRA (RmlC-like cupin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z488_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.170e-13
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1 
Query:  646 GVLTTFIEENGGGNITDTVYAGKISFSPQGLTHFELKIGCTPALLISAFRDDDFSVQQTSTTALAGL 846
            GVLT F+EENGG  I +T+  G+ +F PQGLTH ++ +GC PA +I+A   DDF VQ  ++ AL GL
Sbjct:  130 GVLTAFVEENGGRTIENTIVTGEAAFFPQGLTHVQVNMGCAPATMIAALGSDDFGVQTITSAALKGL 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1288.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YZF9_9STRA1.460e-1659.70RmlC-like cupin domain-containing protein n=1 Tax=... [more]
A0A836CNU2_9STRA2.790e-1556.72RmlC-like cupin domain-containing protein n=7 Tax=... [more]
A0A835Z488_9STRA2.170e-1352.24RmlC-like cupin domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1288contigP-wetherbeei_contig1288:4615..5979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDW6
PFAMsCupin_1
Model size1203
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.36e-05
EggNOG OGs2BYKQ@1|root,2QQ4A@2759|Eukaryota
Descriptionnutrient reservoir activity
Cds size555
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.774996-UTR-P-wetherbeei_contig1288:4614..49181683185964.774996-UTR-P-wetherbeei_contig1288:4614..4918Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1288 4615..4918 +
1683185964.7849474-UTR-P-wetherbeei_contig1288:5080..52831683185964.7849474-UTR-P-wetherbeei_contig1288:5080..5283Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1288 5081..5283 +
1683185964.8038592-UTR-P-wetherbeei_contig1288:5838..59791683185964.8038592-UTR-P-wetherbeei_contig1288:5838..5979Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1288 5839..5979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.7962208-CDS-P-wetherbeei_contig1288:5283..58381683185964.7962208-CDS-P-wetherbeei_contig1288:5283..5838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1288 5284..5838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1288.2.3prot_P-wetherbeei_contig1288.2.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1288 5284..5838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1288.2.3

>prot_P-wetherbeei_contig1288.2.3 ID=prot_P-wetherbeei_contig1288.2.3|Name=mRNA_P-wetherbeei_contig1288.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=185bp
MLSFHFFDPNRPVSPTATSLAAVRHQYPPRAPTSNGAPDCDQRGPGGVLT
TFIEENGGGNITDTVYAGKISFSPQGLTHFELKIGCTPALLISAFRDDDF
SVQQTSTTALAGLPKGWRRPSASPSPNLLPSLPASTSIPPRAPRNAASAA
ASLKTCLRMARCTHVHVDERQRGSRLRGRKGGRV*
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mRNA from alignment at P-wetherbeei_contig1288:4615..5979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1288.2.3 ID=mRNA_P-wetherbeei_contig1288.2.3|Name=mRNA_P-wetherbeei_contig1288.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1365bp|location=Sequence derived from alignment at P-wetherbeei_contig1288:4615..5979+ (Phaeothamnion wetherbeei SAG_119_79)
TCAACAACCGCTAGTGCTCCATCTGATCTATAGGCTCCTCTAATCTATCT
CGAAACCGATTTCCGACGATGATTTATACAGATTGGAGGTTGTCCATAAC
CGGCGCATTGCGCCGCTGTTTGGAGGGCAACTCGCCTCAAGCCATTTTTT
TCATCACAAGCCACCAGCTTACCTTTCTCTATTTATGAAAGTTTTTGACA
ATCACGCGTAGTTCATGATGACGATCGCGCCCTAAATCCTCCTGGCCTCC
TCCGTGCCGCCATGGCGTAGTTTTCTTCGCGGAACCGACACGCGAGGCAT
TCAGGTAAGGAGAAGTTTTGTTCCTTGCCGTATTGAGAGGGGCAGGTAGA
TGCTCTTTCTTTCTGTCGCGTCCTTGCATCGTGTTTGCAAGTCCCCCACA
TTACCAGTTTTCAAAGGTTCCCGCTCTCCCTTGCTGTTCCCTCACGCCAC
CTTTCCAATTGTGCAGTGCTTCTCGTTTGATTTAGCGGGCGCGAAAGCCG
TCAAGGGCGAGGGAAGGAAACGCCATGCTTCGCATTGTCCTTGAGGTGAG
CTAGGAGCAAAAGGATTGAAAGCCACCTGCCACCGCATGCAGATCGAAGG
GATCTTCCTCTCTACTTTGCTTAACAAAGAAGTGCAGGACATGCTGTGCT
GATTTAAAGGTATATATCTATGCTTTCTTTCCACTTCTTCGATCCCAACC
GGCCCGTGTCTCCTACCGCTACCTCCCTTGCAGCCGTGCGGCATCAATAT
CCCCCACGTGCACCCACGAGCAATGGGGCTCCAGACTGTGATCAACGGGG
GCCCGGGGGTGTTTTGACGACTTTCATTGAAGAGAACGGCGGTGGCAACA
TCACCGACACGGTGTATGCCGGAAAGATTTCCTTTTCCCCGCAGGGGCTG
ACCCACTTTGAGCTCAAAATCGGGTGCACTCCCGCACTGCTTATCTCGGC
CTTCAGAGACGACGATTTCAGCGTGCAGCAAACCTCCACCACGGCTCTGG
CGGGCCTGCCGAAGGGCTGGCGGCGTCCCTCAGCATCGCCGAGCCCGAAC
TTGCTACCCTCATTGCCGGCTTCCACGTCAATACCGCCAAGGGCTCCGAG
GAATGCCGCCAGCGCTGCGGCATCGCTTAAAACTTGTCTGAGGATGGCGC
GATGCACGCACGTCCATGTGGACGAAAGGCAGCGAGGATCGCGTTTAAGA
GGCAGAAAGGGGGGAAGGGTGTGAGGGAAGAAGCCTAGGGAAGAAGCGTA
CGAAGGCAGATGAATAACGCAGAGGGGTGTAAAAGCAGCTTGATGCGGTG
TTATTACGAAAGGAAGAGGCACTAGCCAGGATGGCAGGCATTAAAAAAGA
GACAGAGACACAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1288:4615..5979+

>mRNA_P-wetherbeei_contig1288.2.3 ID=mRNA_P-wetherbeei_contig1288.2.3|Name=mRNA_P-wetherbeei_contig1288.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=555bp|location=Sequence derived from alignment at P-wetherbeei_contig1288:4615..5979+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTTCTTTCCACTTCTTCGATCCCAACCGGCCCGTGTCTCCTACCGC
TACCTCCCTTGCAGCCGTGCGGCATCAATATCCCCCACGTGCACCCACGA
GCAATGGGGCTCCAGACTGTGATCAACGGGGGCCCGGGGGTGTTTTGACG
ACTTTCATTGAAGAGAACGGCGGTGGCAACATCACCGACACGGTGTATGC
CGGAAAGATTTCCTTTTCCCCGCAGGGGCTGACCCACTTTGAGCTCAAAA
TCGGGTGCACTCCCGCACTGCTTATCTCGGCCTTCAGAGACGACGATTTC
AGCGTGCAGCAAACCTCCACCACGGCTCTGGCGGGCCTGCCGAAGGGCTG
GCGGCGTCCCTCAGCATCGCCGAGCCCGAACTTGCTACCCTCATTGCCGG
CTTCCACGTCAATACCGCCAAGGGCTCCGAGGAATGCCGCCAGCGCTGCG
GCATCGCTTAAAACTTGTCTGAGGATGGCGCGATGCACGCACGTCCATGT
GGACGAAAGGCAGCGAGGATCGCGTTTAAGAGGCAGAAAGGGGGGAAGGG
TGTGA
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