mRNA_P-wetherbeei_contig1287.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1287.4.1
Unique NamemRNA_P-wetherbeei_contig1287.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1287.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1287contigP-wetherbeei_contig1287:5301..5709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size409
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.3619263-UTR-P-wetherbeei_contig1287:5300..53811683185964.3619263-UTR-P-wetherbeei_contig1287:5300..5381Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1287 5301..5381 -
1683185964.3855596-UTR-P-wetherbeei_contig1287:5687..57091683185964.3855596-UTR-P-wetherbeei_contig1287:5687..5709Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1287 5688..5709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.3778982-CDS-P-wetherbeei_contig1287:5381..56871683185964.3778982-CDS-P-wetherbeei_contig1287:5381..5687Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1287 5382..5687 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1287.4.1prot_P-wetherbeei_contig1287.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1287 5382..5687 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1287.4.1

>prot_P-wetherbeei_contig1287.4.1 ID=prot_P-wetherbeei_contig1287.4.1|Name=mRNA_P-wetherbeei_contig1287.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MRGPYGGYVSCRAVLRVRGRGLAGGHSDETQPVWLGSAPRRRLLPQVLTL
PGTPVSHPETVRRRRAAAVADCCPPAIKRTGGPTDRLSEIPSLRAVAFAA
T*
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mRNA from alignment at P-wetherbeei_contig1287:5301..5709-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1287.4.1 ID=mRNA_P-wetherbeei_contig1287.4.1|Name=mRNA_P-wetherbeei_contig1287.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=409bp|location=Sequence derived from alignment at P-wetherbeei_contig1287:5301..5709- (Phaeothamnion wetherbeei SAG_119_79)
CAAAACCCTGAACCCTGCCCGCATGCGCGGACCGTATGGAGGGTATGTCA
GTTGCCGGGCTGTGCTCCGTGTGCGGGGGAGGGGACTGGCTGGCGGCCAC
TCAGACGAGACGCAGCCGGTTTGGCTCGGATCGGCCCCGCGGCGCCGCTT
GCTGCCGCAGGTTTTGACGTTGCCGGGAACGCCTGTGAGCCACCCTGAAA
CCGTGAGACGAAGGCGGGCAGCAGCGGTTGCTGACTGCTGCCCGCCGGCC
ATTAAACGGACTGGTGGGCCGACAGACAGATTGTCCGAAATACCGAGCTT
AAGGGCTGTCGCGTTCGCCGCGACATGAAGTCGTGCTGCCCGGCGCGAGT
GCGCCGTCCGGACGTCGCACGGGAAATCATGCATAGAAGATTACGACGCA
AATGTGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1287:5301..5709-

>mRNA_P-wetherbeei_contig1287.4.1 ID=mRNA_P-wetherbeei_contig1287.4.1|Name=mRNA_P-wetherbeei_contig1287.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig1287:5301..5709- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCGGACCGTATGGAGGGTATGTCAGTTGCCGGGCTGTGCTCCGTGT
GCGGGGGAGGGGACTGGCTGGCGGCCACTCAGACGAGACGCAGCCGGTTT
GGCTCGGATCGGCCCCGCGGCGCCGCTTGCTGCCGCAGGTTTTGACGTTG
CCGGGAACGCCTGTGAGCCACCCTGAAACCGTGAGACGAAGGCGGGCAGC
AGCGGTTGCTGACTGCTGCCCGCCGGCCATTAAACGGACTGGTGGGCCGA
CAGACAGATTGTCCGAAATACCGAGCTTAAGGGCTGTCGCGTTCGCCGCG
ACATGA
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