mRNA_P-wetherbeei_contig12869.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12869.1.1
Unique NamemRNA_P-wetherbeei_contig12869.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: A0A1F4A9W1_9PROT (C4-dicarboxylate ABC transporter permease n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_20 TaxID=1797488 RepID=A0A1F4A9W1_9PROT)

HSP 1 Score: 681 bits (1756), Expect = 4.100e-244
Identity = 364/437 (83.30%), Postives = 405/437 (92.68%), Query Frame = 1
Query:    1 MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVLG 1311
            M+WQ AAW++LGGSTVL+FLGLPVAF+FLVIN+ GA L+LGGEPG+VQLARNSV SV SF+LTPIPLFVLMGEVLFHTGLAVKVIDG+ER+I  +PGRLAVVAVVAGTVFSAISGSTIATTAMLGSLM+PVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLL+GGV+PGL+LS  F+ YI++RVKL PELAP SE   Y GWEKLRPF QYVLPLVSIFVIV+ASM+AGWATPTESAAIGA ATV LA+AYRALT+  ++ ALRGT  ISGMILFIIVGATTFSQILSF+GAS+GLV LIT QGLPP+AV+AGMML+LIFLG+FVDQVSMM+ITLPIFMPVVQ FG+D VWFGVMFLICMQ+GLLLPPHG+LLMTMKGVSPPQV M+HIF+AV P+V MSIL+L LVFFVPAVAVWLP++LG
Sbjct:    1 MSWQGAAWLMLGGSTVLIFLGLPVAFSFLVINIVGAWLFLGGEPGMVQLARNSVVSVASFALTPIPLFVLMGEVLFHTGLAVKVIDGVERLIRNLPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMLPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLIGGVIPGLLLSAAFIAYIVVRVKLKPELAPASEFQVYHGWEKLRPFFQYVLPLVSIFVIVVASMAAGWATPTESAAIGALATVALALAYRALTIQNLLQALRGTASISGMILFIIVGATTFSQILSFTGASNGLVELITEQGLPPLAVVAGMMLILIFLGVFVDQVSMMMITLPIFMPVVQKFGIDLVWFGVMFLICMQMGLLLPPHGMLLMTMKGVSPPQVTMAHIFRAVTPFVLMSILMLVLVFFVPAVAVWLPQILG 437          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: A0A536W3S5_9PROT (TRAP transporter large permease subunit n=8 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536W3S5_9PROT)

HSP 1 Score: 663 bits (1710), Expect = 4.110e-237
Identity = 357/436 (81.88%), Postives = 397/436 (91.06%), Query Frame = 1
Query:    1 MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVL 1308
            M+W+ AAW++LGGST LLFLGLPVAF+FLVINL GA L+LGGE GLVQ ARN V SV SFSLTPIPLF+LMGEVLFHTGLAVKVIDG+ER+I QVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLM+PVML+RGYHPTMATGP+MAIGAVDMLIPPSALTVLLGSLSGISISKLL+GG+VPGLILS  FV YI++RVK++P LAP +   EY GWEKLRPF+QYV+PLVSIFV+V+ASMSAGWATPTESAAIGA  T+LLA AYRA+TV  ++ ALRGT  ISGMILFIIVGA TFSQILSFSGAS+G+V +I   GLPP+A+IA MMLVLIFLG+FV+QVSMM+ITLPIFMP+VQ FGVD VWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQV M HIF+AVVPY+ MS+LVLALVFFVPAVAVWLP+ L
Sbjct:    1 MSWEAAAWLMLGGSTALLFLGLPVAFSFLVINLLGAWLFLGGEAGLVQFARNCVGSVASFSLTPIPLFILMGEVLFHTGLAVKVIDGVERLIRQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMLPVMLARGYHPTMATGPLMAIGAVDMLIPPSALTVLLGSLSGISISKLLIGGIVPGLILSVAFVVYIVVRVKMNPSLAPAASFTEYRGWEKLRPFIQYVVPLVSIFVVVVASMSAGWATPTESAAIGALFTILLAAAYRAITVDNLLKALRGTASISGMILFIIVGAMTFSQILSFSGASNGMVEIIATLGLPPLALIAVMMLVLIFLGLFVEQVSMMMITLPIFMPLVQKFGVDPVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVTMGHIFRAVVPYIFMSLLVLALVFFVPAVAVWLPKAL 436          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: A0A177QZD2_9PROT (C4-dicarboxylate ABC transporter permease n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A177QZD2_9PROT)

HSP 1 Score: 657 bits (1696), Expect = 5.550e-235
Identity = 353/436 (80.96%), Postives = 401/436 (91.97%), Query Frame = 1
Query:    1 MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVL 1308
            M+W  AAW++LGGST+LLFLGLPVAF+FLVINL GA L+LGGEPGLVQLARNSV SV SFSLTPIPLF+LMGEVLFHTGLAVKVI+G+ER+I QVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLM+PVMLSRGYHPTMATGP+MAIGAVDMLIPPSALTVLLGSLSGISISKLL+GGV+PGLILS  F+ YII RVK++P LAP +   E+ GWEK RPF+QYV+PLVSIF +V+ASMSAGWATPTESAAIGAF T++LA+ Y +L++  ++AALRGT  ISGMILFIIVGATTFSQILSFSGAS+GLV +I   GL P+AVIA MM++LIFLG+FV+QVSMM+ITLPI+MP+VQ +GVD VWFGVMFLICMQLGLLLPPHGLLLMTMKGV+PPQVRM HIFQAV+PY+AMS+L+LALVFFVPAVAVWLP+VL
Sbjct:    1 MSWDAAAWLMLGGSTLLLFLGLPVAFSFLVINLLGAWLFLGGEPGLVQLARNSVGSVASFSLTPIPLFILMGEVLFHTGLAVKVIEGVERLIRQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMLPVMLSRGYHPTMATGPLMAIGAVDMLIPPSALTVLLGSLSGISISKLLIGGVLPGLILSVAFIVYIIARVKINPALAPTAGFTEHRGWEKWRPFVQYVIPLVSIFAVVVASMSAGWATPTESAAIGAFFTMVLAVLYGSLSIKNLLAALRGTAAISGMILFIIVGATTFSQILSFSGASNGLVEMIGRLGLSPLAVIAAMMVLLIFLGLFVEQVSMMMITLPIYMPLVQKYGVDPVWFGVMFLICMQLGLLLPPHGLLLMTMKGVAPPQVRMGHIFQAVLPYIAMSLLLLALVFFVPAVAVWLPKVL 436          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: A0A8I1R9R2_9BURK (TRAP transporter large permease n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A8I1R9R2_9BURK)

HSP 1 Score: 654 bits (1686), Expect = 1.850e-233
Identity = 349/437 (79.86%), Postives = 397/437 (90.85%), Query Frame = 1
Query:    1 MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVLG 1311
            M WQ AAW+LLGGSTVLLFLGLPVAF+FLVINL GA L+LGGE G++QLARNSV SV SF+LTPIPLFVLMGE+LFHTG+AVKVIDGIER+I QVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLM+P+ML+RGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLL+GG+VPGL+LS  F+ YI++RV ++P LAP ++   + GWE  RPF+QYV+PLVSIF +V+AS++AGWATPTESAAIGA AT+LLA+AYRALTV+ ++ ALRGTVGISGMILFIIVGATTF+QILSFSGAS+GLV +ITG GL   AV+  MMLVLIFLG+FVDQVSMM+ITLPIFMPVVQ  G+D VWFGVM+LICMQLGLLLPPHG+LLMTMKGV+PP V M+HIFQAV+PYVAMS+LVL LVF  PAVAVWLP +LG
Sbjct:    1 MAWQTAAWLLLGGSTVLLFLGLPVAFSFLVINLVGAWLFLGGESGMIQLARNSVASVQSFALTPIPLFVLMGEILFHTGIAVKVIDGIERLIRQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMLPMMLARGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLIGGIVPGLLLSVAFIAYIVIRVGMNPSLAPKAQFTVHRGWEHWRPFVQYVIPLVSIFAVVVASLTAGWATPTESAAIGALATILLALAYRALTVTNLLQALRGTVGISGMILFIIVGATTFAQILSFSGASNGLVQIITGHGLSTAAVVVAMMLVLIFLGLFVDQVSMMMITLPIFMPVVQRLGIDPVWFGVMYLICMQLGLLLPPHGMLLMTMKGVAPPPVTMAHIFQAVIPYVAMSLLVLVLVFLWPAVAVWLPTLLG 437          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: A0A1F4ESW3_9PROT (C4-dicarboxylate ABC transporter permease n=5 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4ESW3_9PROT)

HSP 1 Score: 640 bits (1651), Expect = 3.910e-228
Identity = 346/437 (79.18%), Postives = 388/437 (88.79%), Query Frame = 1
Query:    1 MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVLG 1311
            M WQ AAW+LLGGST+LLFLGLPVAFTFL +NL GA +W+GGE GLVQL+RN+V SV SF+LTPIPLFVLMGEVLFHTGLAV VIDGIER++ QVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVML+RGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLL+GG+ PGLIL+ +FV YI+ RVKL+P LAP + +  + GWEK   F++YV+PLVSIF +V+ASM+AGWATPTESAAIGAFATV LA AYRAL+ S ++AAL+GT+ ISGMILFIIVGATTFSQILSFSGAS+GLV+ I GQGL P AVIA MMLVLI LG+FVDQVSMMLITLPIFMPVVQ  GVD VWFGVMFLICMQLGLLLPPHGLLLMTMK VSPPQV M HI++ VVPYV +S++VL ++F VP VA WLP  +G
Sbjct:    1 MDWQFAAWLLLGGSTLLLFLGLPVAFTFLAVNLVGAAVWMGGEAGLVQLSRNAVASVASFALTPIPLFVLMGEVLFHTGLAVNVIDGIERLVRQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLARGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLIGGITPGLILAVIFVVYIVARVKLEPALAPAARVENFRGWEKYGLFVRYVIPLVSIFALVVASMAAGWATPTESAAIGAFATVALAAAYRALSRSNLLAALQGTMAISGMILFIIVGATTFSQILSFSGASNGLVSTIVGQGLSPQAVIAAMMLVLILLGVFVDQVSMMLITLPIFMPVVQQLGVDPVWFGVMFLICMQLGLLLPPHGLLLMTMKSVSPPQVTMVHIYRGVVPYVLISLVVLMVIFLVPGVATWLPSKIG 437          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: A0A521Z654_9PROT (TRAP transporter large permease n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521Z654_9PROT)

HSP 1 Score: 639 bits (1648), Expect = 1.120e-227
Identity = 340/435 (78.16%), Postives = 391/435 (89.89%), Query Frame = 1
Query:    1 MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRV 1305
            M+WQ+AA I+LGGST L+F+G+PV F FLVINL GA+L+LGGE GL Q ARNSV SV +FSLTPIPLF+LMGEVLFHTGLA+KVID +ER+I +VPGRLAVVAVVAGTVFSAISGSTIATTAMLG+LMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISI KLL+GG++PGL+LS  FV YI++RVKL P +AP S+  EY GWEKLRPF+QYVLPL+SIFV+V+ASM+AGWATPTESAAIG   T++LA+AYRALT+  ++ AL GT  ISGMILFII GA TF+QILSFSGAS GLV LI+ QGLPP+AVIA M+++LIFLGIFVDQVSMM+ITLPIFMP+VQ FG+D VWFGVMFLICMQLGLLLPPHGLLLMTMKGV+PPQV M+ +F+AV+PYV +SIL+LALVFFVP  AVWLP+V
Sbjct:    1 MSWQLAACIMLGGSTALIFMGMPVGFAFLVINLIGAILYLGGEAGLTQFARNSVGSVATFSLTPIPLFILMGEVLFHTGLAIKVIDAVERLIKEVPGRLAVVAVVAGTVFSAISGSTIATTAMLGTLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISIPKLLIGGILPGLLLSIAFVVYIVVRVKLQPSIAPSSKFDEYHGWEKLRPFVQYVLPLISIFVVVVASMTAGWATPTESAAIGTVFTLVLALAYRALTMRNLIRALEGTASISGMILFIIFGAMTFAQILSFSGASDGLVDLISSQGLPPLAVIAAMLVLLIFLGIFVDQVSMMMITLPIFMPLVQKFGIDPVWFGVMFLICMQLGLLLPPHGLLLMTMKGVAPPQVLMADVFRAVMPYVVLSILMLALVFFVPGTAVWLPKV 435          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: A0A1F3YSC4_9PROT (C4-dicarboxylate ABC transporter permease n=2 Tax=Bacteria TaxID=2 RepID=A0A1F3YSC4_9PROT)

HSP 1 Score: 626 bits (1615), Expect = 6.300e-223
Identity = 334/420 (79.52%), Postives = 384/420 (91.43%), Query Frame = 1
Query:   52 LFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVLG 1311
            +FLGLPVAF FL INL GA ++LGG+ G++QLARNSVQSVTSF+LTPIPLF+LMGEVLFHTGLAVKVIDG+ER+I  VPGRLAV+AVVAGTVFSAISGSTIATTAMLGSLM+PVML+RGYHPT+ATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGG+VPGLILS +F+ YI++RV+L+P LAP +   E+ GW ++RPFLQYV+PLVSIFV+V+ +M AGWATPTE AA+GAFAT+LLA+ YR+LTV+ +V ALRGT GISGMILFIIVGATTFSQILSFSGASSGL  LIT  GLPP+AVIAGMML+LIFLG+FV+QVSMM+ITLPIFMPVVQ  GVD +WFGVMFLICMQLGLL+PPHGLLLMTMKGVSPPQV M HIF+AV+P++ +SI+VLALVF VPAVA WLP ++G
Sbjct:    1 MFLGLPVAFAFLAINLLGAAIFLGGDAGMMQLARNSVQSVTSFALTPIPLFILMGEVLFHTGLAVKVIDGVERLIRDVPGRLAVIAVVAGTVFSAISGSTIATTAMLGSLMLPVMLARGYHPTIATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGIVPGLILSAIFIGYIVLRVRLEPGLAPKTAFEEHHGWRRIRPFLQYVVPLVSIFVVVVGAMIAGWATPTECAALGAFATMLLALLYRSLTVANLVRALRGTAGISGMILFIIVGATTFSQILSFSGASSGLAQLITDLGLPPLAVIAGMMLLLIFLGVFVEQVSMMMITLPIFMPVVQQMGVDLIWFGVMFLICMQLGLLMPPHGLLLMTMKGVSPPQVTMMHIFRAVMPFLLISIVVLALVFLVPAVATWLPNLVG 420          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: Q122C5_POLSJ (TRAP dicarboxylate transporter-DctM subunit n=7 Tax=unclassified Polaromonas TaxID=2638319 RepID=Q122C5_POLSJ)

HSP 1 Score: 617 bits (1590), Expect = 8.300e-219
Identity = 327/437 (74.83%), Postives = 385/437 (88.10%), Query Frame = 1
Query:    7 WQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAP--PSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVLG 1311
            W IAAW++LGGSTVLLF+G+PVA TF+ IN+ GA L++GGEPGLVQLAR+SV SVT+FSLTPIPLFVLMGE+LFHTGLA+KVI+G+ER+I  VPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLM+P+MLSRGYHPT+ATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLL+GGVVPG+ILS  FV +I++RV + P+LAP    + V+Y GW +   F  YVLP +SIF +V+ +++AGWATPTE AA+GAFAT+LLA+ YR LT   ++ AL+GT GISGMILFII+GATTF+QILSFSGAS+GLV  ITGQGL    ++ GMML+LIFLGIFVDQVSMM+ITLPIFMPVVQA G+D VWFGVMFLICMQLGLLLPPHGLLLMTM+GV+PP V M HIF AVVPYV MS+++LA VF++PA+A WLPR++G
Sbjct:    4 WGIAAWLMLGGSTVLLFIGMPVALTFITINIIGAWLYMGGEPGLVQLARSSVSSVTAFSLTPIPLFVLMGEILFHTGLAIKVIEGVERLIKHVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMLPIMLSRGYHPTLATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLIGGVVPGVILSVAFVLWIVIRVTISPQLAPVDKDDAVQYRGWARWSLFFGYVLPTLSIFGVVVGALAAGWATPTECAALGAFATMLLALCYRVLTRDAVLKALKGTAGISGMILFIILGATTFAQILSFSGASNGLVQFITGQGLSTGMIVVGMMLMLIFLGIFVDQVSMMMITLPIFMPVVQALGIDPVWFGVMFLICMQLGLLLPPHGLLLMTMRGVAPPAVTMGHIFMAVVPYVVMSLILLAAVFWIPAIATWLPRMIG 440          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: F5XY36_RAMTT (Candidate large permease component n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) TaxID=365046 RepID=F5XY36_RAMTT)

HSP 1 Score: 613 bits (1580), Expect = 2.660e-217
Identity = 330/439 (75.17%), Postives = 385/439 (87.70%), Query Frame = 1
Query:    1 MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPS--ELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVLG 1311
            M W+ AAW++LGGSTVLLFLG+PVA TF+ +N+ GA L++GGE GL QLAR+SV SV +FSLTPIPLFVLMGEVLFHTGLA+KVI+GIER+I +VPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLM+P+ML+RGYHPT+ATGP+MAIGAVDMLIPPSALTVLLGSLSGISISKLL+GGVVPG ILS  FV +I++RVK +P LAPP   E    SGW + RPF  YVLP +SIF +V+ +++AGWATPTE AA+GAFAT++LA  YRALT   ++ AL+GT  ISGMILFII+GATTF+QILSFSGAS+GLV LITGQGL   AV+AGM+ +LIFLGIFVDQVSMM+ITLPIFMP+VQA  VD VWFGVMFLICMQLGLLLPPHGLLLMTM+GV+PPQV M+HIF+AVVPYVAMS+L+LA VF  PA+A WLP ++G
Sbjct:    1 MNWEFAAWLMLGGSTVLLFLGMPVALTFITVNIVGAWLYMGGEVGLAQLARSSVSSVAAFSLTPIPLFVLMGEVLFHTGLALKVIEGIERLIRRVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMLPIMLARGYHPTLATGPLMAIGAVDMLIPPSALTVLLGSLSGISISKLLIGGVVPGAILSVAFVLWIVLRVKSNPRLAPPDPDEGAGPSGWARWRPFFAYVLPTLSIFGVVVGALAAGWATPTECAALGAFATLVLAACYRALTAQALLKALQGTAAISGMILFIILGATTFAQILSFSGASNGLVQLITGQGLSTAAVVAGMLGLLIFLGIFVDQVSMMMITLPIFMPIVQALAVDPVWFGVMFLICMQLGLLLPPHGLLLMTMRGVAPPQVTMAHIFRAVVPYVAMSLLLLAAVFHWPAIATWLPALIG 439          
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Match: A0A7V7XPH2_9RHOO (TRAP transporter large permease subunit n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A7V7XPH2_9RHOO)

HSP 1 Score: 612 bits (1578), Expect = 4.980e-217
Identity = 322/436 (73.85%), Postives = 384/436 (88.07%), Query Frame = 1
Query:    1 MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLARNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIGAVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVKLDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTESAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITLPIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVRMSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVL 1308
            M+W+ +A +LLGGST+LLFLGLPVAFTFL  NL GA+L+LGGEPGL+QLARNS+ SV SFSLTPIPLFVLMGEVLFHTGLA KVI+GIE MI ++PGRLAVVAVVAGTVFSAISGSTIATTAMLGSLM+P ML RGYHPTMATGPIMAIGAVDMLIPPSALTVL GSLSGISISKLL+GG+VPGLI+S  FV YI+ + K++P LAP +EL  + GW++ RPF++YV+P+VSIFVIV+ +M+AGWATPTESAAIGA AT++LA  YR+LTV  ++ +L+G V ISGM+LFIIVGATTFSQILSFSGA++GLV ++TG  L    ++ GMML+LIFLG+FVDQ+SMM+ITLPIFMP+VQ+  +D VWFG++FLICMQLGLL+PPHGLLLMTM+GV+PPQV M HIFQAVVPY+ +S+  LALVFFVPA+  WLP +L
Sbjct:    1 MSWEASALLLLGGSTLLLFLGLPVAFTFLAANLVGAVLFLGGEPGLMQLARNSIVSVQSFSLTPIPLFVLMGEVLFHTGLAFKVIEGIEHMIKRLPGRLAVVAVVAGTVFSAISGSTIATTAMLGSLMLPAMLQRGYHPTMATGPIMAIGAVDMLIPPSALTVLFGSLSGISISKLLIGGIVPGLIMSAAFVIYIVAQAKMNPSLAPDAELPGHRGWDRFRPFVKYVVPMVSIFVIVVGAMAAGWATPTESAAIGALATIVLAGIYRSLTVGNLLKSLKGAVAISGMLLFIIVGATTFSQILSFSGATNGLVQMVTGHDLSATQIVVGMMLMLIFLGVFVDQISMMMITLPIFMPIVQSLNLDLVWFGMLFLICMQLGLLMPPHGLLLMTMRGVAPPQVTMKHIFQAVVPYLVISLATLALVFFVPAITTWLPALL 436          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12869.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4A9W1_9PROT4.100e-24483.30C4-dicarboxylate ABC transporter permease n=1 Tax=... [more]
A0A536W3S5_9PROT4.110e-23781.88TRAP transporter large permease subunit n=8 Tax=Be... [more]
A0A177QZD2_9PROT5.550e-23580.96C4-dicarboxylate ABC transporter permease n=5 Tax=... [more]
A0A8I1R9R2_9BURK1.850e-23379.86TRAP transporter large permease n=1 Tax=Burkholder... [more]
A0A1F4ESW3_9PROT3.910e-22879.18C4-dicarboxylate ABC transporter permease n=5 Tax=... [more]
A0A521Z654_9PROT1.120e-22778.16TRAP transporter large permease n=1 Tax=Betaproteo... [more]
A0A1F3YSC4_9PROT6.300e-22379.52C4-dicarboxylate ABC transporter permease n=2 Tax=... [more]
Q122C5_POLSJ8.300e-21974.83TRAP dicarboxylate transporter-DctM subunit n=7 Ta... [more]
F5XY36_RAMTT2.660e-21775.17Candidate large permease component n=1 Tax=Ramliba... [more]
A0A7V7XPH2_9RHOO4.980e-21773.85TRAP transporter large permease subunit n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12869contigP-wetherbeei_contig12869:504..1817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog296591.Bpro_4738
PFAMsDctM
Model size1314
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.36e-219
EggNOG OGsCOG4664@1|root,COG4664@2|Bacteria,1QU8F@1224|Proteobacteria,2VKVK@28216|Betaproteobacteria,4AGQC@80864|Comamonadaceae
DescriptionTripartite ATP-independent periplasmic transporter, DctM component
Cds size1314
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.3305445-CDS-P-wetherbeei_contig12869:503..18171683185964.3305445-CDS-P-wetherbeei_contig12869:503..1817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12869 504..1817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12869.1.1prot_P-wetherbeei_contig12869.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12869 504..1817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12869.1.1

>prot_P-wetherbeei_contig12869.1.1 ID=prot_P-wetherbeei_contig12869.1.1|Name=mRNA_P-wetherbeei_contig12869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=438bp
MTWQIAAWILLGGSTVLLFLGLPVAFTFLVINLAGAMLWLGGEPGLVQLA
RNSVQSVTSFSLTPIPLFVLMGEVLFHTGLAVKVIDGIERMISQVPGRLA
VVAVVAGTVFSAISGSTIATTAMLGSLMVPVMLSRGYHPTMATGPIMAIG
AVDMLIPPSALTVLLGSLSGISISKLLVGGVVPGLILSTMFVFYIIMRVK
LDPELAPPSELVEYSGWEKLRPFLQYVLPLVSIFVIVIASMSAGWATPTE
SAAIGAFATVLLAMAYRALTVSKMVAALRGTVGISGMILFIIVGATTFSQ
ILSFSGASSGLVALITGQGLPPMAVIAGMMLVLIFLGIFVDQVSMMLITL
PIFMPVVQAFGVDQVWFGVMFLICMQLGLLLPPHGLLLMTMKGVSPPQVR
MSHIFQAVVPYVAMSILVLALVFFVPAVAVWLPRVLG*
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mRNA from alignment at P-wetherbeei_contig12869:504..1817-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12869.1.1 ID=mRNA_P-wetherbeei_contig12869.1.1|Name=mRNA_P-wetherbeei_contig12869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1314bp|location=Sequence derived from alignment at P-wetherbeei_contig12869:504..1817- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTGGCAGATCGCGGCGTGGATCCTCCTTGGCGGTTCGACCGTGCT GCTGTTCCTCGGCCTGCCGGTCGCCTTCACTTTCCTCGTCATCAACCTCG CCGGGGCGATGCTCTGGCTGGGGGGCGAACCAGGCCTGGTGCAGCTCGCC CGCAACAGCGTGCAGTCGGTCACCAGCTTTTCGCTCACGCCCATCCCGCT TTTCGTGCTGATGGGAGAGGTGCTGTTCCACACAGGCCTCGCGGTCAAGG TGATCGACGGCATCGAGCGCATGATCAGCCAGGTGCCGGGTCGCCTTGCG GTCGTCGCAGTCGTGGCAGGAACCGTGTTCTCCGCCATATCGGGCTCGAC GATCGCGACCACGGCGATGCTCGGCAGCCTGATGGTGCCGGTGATGCTGT CGCGCGGCTACCACCCGACCATGGCGACGGGCCCGATCATGGCGATCGGC GCGGTGGACATGCTGATCCCCCCTTCCGCCCTCACGGTACTGCTCGGCAG CCTGTCGGGGATCTCGATCTCCAAGCTGCTGGTCGGCGGCGTCGTGCCCG GCCTGATCCTGTCGACGATGTTCGTCTTCTACATCATCATGCGCGTGAAG CTCGACCCGGAGCTCGCGCCCCCCTCCGAGCTTGTGGAGTACAGCGGCTG GGAAAAACTGCGTCCGTTCCTTCAGTACGTGCTGCCGCTGGTGTCGATAT TCGTGATCGTCATCGCGTCGATGTCGGCTGGCTGGGCGACGCCCACCGAG TCGGCCGCCATCGGGGCCTTCGCGACCGTACTGCTGGCCATGGCCTACCG CGCGCTGACCGTGTCCAAGATGGTCGCAGCGCTGCGCGGTACGGTCGGTA TTTCCGGCATGATCTTGTTCATCATCGTGGGCGCGACCACGTTCTCGCAG ATTCTCAGCTTCTCCGGCGCGAGCAGCGGCCTGGTGGCGCTGATCACCGG GCAGGGCCTGCCACCGATGGCCGTCATCGCAGGAATGATGCTGGTACTGA TTTTCCTCGGCATCTTCGTCGACCAGGTAAGCATGATGCTGATCACGCTG CCGATCTTCATGCCGGTCGTGCAGGCCTTCGGCGTGGACCAGGTCTGGTT CGGTGTAATGTTCCTGATCTGCATGCAGCTCGGACTGTTGCTGCCGCCCC ATGGCCTGCTGCTGATGACCATGAAGGGCGTTTCGCCCCCGCAGGTTAGG ATGAGCCATATCTTCCAGGCGGTGGTGCCGTACGTGGCGATGAGCATCCT GGTGCTCGCGCTGGTGTTTTTCGTTCCTGCGGTGGCCGTGTGGCTGCCCA GGGTACTCGGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12869:504..1817-

>mRNA_P-wetherbeei_contig12869.1.1 ID=mRNA_P-wetherbeei_contig12869.1.1|Name=mRNA_P-wetherbeei_contig12869.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1314bp|location=Sequence derived from alignment at P-wetherbeei_contig12869:504..1817- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTGGCAGATCGCGGCGTGGATCCTCCTTGGCGGTTCGACCGTGCT
GCTGTTCCTCGGCCTGCCGGTCGCCTTCACTTTCCTCGTCATCAACCTCG
CCGGGGCGATGCTCTGGCTGGGGGGCGAACCAGGCCTGGTGCAGCTCGCC
CGCAACAGCGTGCAGTCGGTCACCAGCTTTTCGCTCACGCCCATCCCGCT
TTTCGTGCTGATGGGAGAGGTGCTGTTCCACACAGGCCTCGCGGTCAAGG
TGATCGACGGCATCGAGCGCATGATCAGCCAGGTGCCGGGTCGCCTTGCG
GTCGTCGCAGTCGTGGCAGGAACCGTGTTCTCCGCCATATCGGGCTCGAC
GATCGCGACCACGGCGATGCTCGGCAGCCTGATGGTGCCGGTGATGCTGT
CGCGCGGCTACCACCCGACCATGGCGACGGGCCCGATCATGGCGATCGGC
GCGGTGGACATGCTGATCCCCCCTTCCGCCCTCACGGTACTGCTCGGCAG
CCTGTCGGGGATCTCGATCTCCAAGCTGCTGGTCGGCGGCGTCGTGCCCG
GCCTGATCCTGTCGACGATGTTCGTCTTCTACATCATCATGCGCGTGAAG
CTCGACCCGGAGCTCGCGCCCCCCTCCGAGCTTGTGGAGTACAGCGGCTG
GGAAAAACTGCGTCCGTTCCTTCAGTACGTGCTGCCGCTGGTGTCGATAT
TCGTGATCGTCATCGCGTCGATGTCGGCTGGCTGGGCGACGCCCACCGAG
TCGGCCGCCATCGGGGCCTTCGCGACCGTACTGCTGGCCATGGCCTACCG
CGCGCTGACCGTGTCCAAGATGGTCGCAGCGCTGCGCGGTACGGTCGGTA
TTTCCGGCATGATCTTGTTCATCATCGTGGGCGCGACCACGTTCTCGCAG
ATTCTCAGCTTCTCCGGCGCGAGCAGCGGCCTGGTGGCGCTGATCACCGG
GCAGGGCCTGCCACCGATGGCCGTCATCGCAGGAATGATGCTGGTACTGA
TTTTCCTCGGCATCTTCGTCGACCAGGTAAGCATGATGCTGATCACGCTG
CCGATCTTCATGCCGGTCGTGCAGGCCTTCGGCGTGGACCAGGTCTGGTT
CGGTGTAATGTTCCTGATCTGCATGCAGCTCGGACTGTTGCTGCCGCCCC
ATGGCCTGCTGCTGATGACCATGAAGGGCGTTTCGCCCCCGCAGGTTAGG
ATGAGCCATATCTTCCAGGCGGTGGTGCCGTACGTGGCGATGAGCATCCT
GGTGCTCGCGCTGGTGTTTTTCGTTCCTGCGGTGGCCGTGTGGCTGCCCA
GGGTACTCGGATGA
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