mRNA_P-wetherbeei_contig12859.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12859.1.1
Unique NamemRNA_P-wetherbeei_contig12859.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12859.1.1 vs. uniprot
Match: D7G3B9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3B9_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 3.230e-32
Identity = 82/212 (38.68%), Postives = 115/212 (54.25%), Query Frame = 1
Query:    7 DVYVNGARLRCDEAVTILTGPVVGQVTGSAAVILLEIDTATHRRTGERAATAIVTCFLSLVDENCPRGRVVAARTLTLRPRLPAAFVFGVDDVTRSALLPGRRYSACFGGINAREATERLARFSTLDAAPLRPLRLLAVSGDHPQALPPGQPTLWATVADRLE-----------AGDDAACDEYGYNAVNFTLHLGGHVWLYSAFEEALELV 609
            D+ + GARL C   V +LTGPV+G+VT ++AV+LLE+D A      E   T+ VTC +S+ +  C  GRVV + TLTL  R P AF  G      S + PGR ++ CFGG++A +A  R+ RF T        L  +AVSGD P  L PG+P+LW  + +R+            A  +       Y  ++  LH GG  W+  A E+A EL+
Sbjct:   51 DMCLYGARLVCTPGVQVLTGPVIGEVTENSAVVLLEVDIAP-----ELGPTSPVTCHVSVSEGACRGGRVVHSTTLTLPSRRPRAFRIGGG--ISSVIGPGRVFTVCFGGVSAEDARFRVGRFRTPGTCFEPCLGAIAVSGDRPDRLAPGEPSLWRVLRERVAVPSIVPGNVPGASGEGKEGHQHYFPIDVVLHTGGQAWMADALEDAWELL 255          
BLAST of mRNA_P-wetherbeei_contig12859.1.1 vs. uniprot
Match: A0A836CLN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN7_9STRA)

HSP 1 Score: 132 bits (332), Expect = 4.300e-32
Identity = 83/198 (41.92%), Postives = 111/198 (56.06%), Query Frame = 1
Query:    7 DVYVNGARLRCDEAVTILTGPVVGQVTGSAAVILLEIDTATHRRTGERAATAIVTCFLSLVDENCPRGRVVAARTLTLRPRLPAAFVFGVDDVTRSALLPGRRYSACFGGINAREATERLARFSTLDAAPLRPLRLLAVSGDHPQALPPGQPTLWATVADRLEAGDDAACDEYGYNAVNFTLHLGGHVWLYSAFEEAL 600
            +++++GA L CD  V++LTGPVVGQVT S  V LLE++ A   RTG   + A +T  L  V    P GRVVA+ TL +    P AF FG     +  L P   Y   F G+ A +A   +A F T   A L+ LR +A+S D PQAL PG+PTLW+ +ADRL          +   +V+  LHLGG V + + FE  L
Sbjct:   60 ELHMHGAALTCDPDVSVLTGPVVGQVTLSGVVCLLEVEVAP--RTG---SAATITGHLCEVPRGSPHGRVVASVTLQVTTGRPVAFRFGSGSSDQETLCPSGHYKVIFSGLRASDARACVASFHTPALADLQRLRCVALSNDDPQALAPGEPTLWSHLADRLR---------HDATSVDVVLHLGGQVPIAATFESCL 243          
BLAST of mRNA_P-wetherbeei_contig12859.1.1 vs. uniprot
Match: F0Y511_AURAN (FYVE-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y511_AURAN)

HSP 1 Score: 105 bits (261), Expect = 1.430e-22
Identity = 74/202 (36.63%), Postives = 100/202 (49.50%), Query Frame = 1
Query:    1 SEDVYVNGARLRCDEAVTILTGPVVGQVTGSAAVILLEIDTATHRRTGERAATAIVTCFLSLVDENCPRGRVVAARTLTLRPRLPAAFVFGVDDVTRSALLPGRRYSACFGGINAREATERLARFSTLDAAPLRP---LRLLAVSGDHPQALPPGQPTLWATVADRLEAGDDAACDEYGYNAVNFTLHLGGHVWLYSAFEEA 597
            S D+Y+ GARL+CD AV ++TGPVVG V  + A ILLE+D           A A V     LVD+NCP GR       TL+   P     GV ++T   L P  R+    G ++  +A ERL  F T + A  R     R +AV+ D P A+ PG+   W T+ +R+               VN  +H+GG V +   FEEA
Sbjct:   52 SGDLYLCGARLKCDGAVRVVTGPVVGLVGSTTARILLEVD-----------ADAEVAFAACLVDKNCPGGRETRRGAATLKANRP-----GVCELT--GLTPDSRFVVVLGNVHRSDAVERLCEFCTYERAGKREEARARFIAVAHDRPTAVRPGEYNRWETIVERVSMRQ--------LPPVNVMVHVGGQVEMRRFFEEA 227          
BLAST of mRNA_P-wetherbeei_contig12859.1.1 vs. uniprot
Match: A0A7S1TYY6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYY6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 7.700e-8
Identity = 56/200 (28.00%), Postives = 91/200 (45.50%), Query Frame = 1
Query:   10 VYVNGARLRCDEAVTILTGPVVGQVTGSAAVILLEIDTATHRRTGERAATAIVTCFLSLVDENCPRGRVVAARTLTLRPRLPAAFVFGVDDVTRSALLPGRRYSACFGGINAREATERLARFSTLDAAPLRPLRLLAVSGDHPQALPPGQPTLWATVADRLEAGDDAACDEYGYNAVNFTLHLGGHVWLYSAFEEALELV 609
            V+ N   L CDE++ I  GPVVG VT + A+ILLE + A             +T  + LVD+  P GR V           P  + F +++++     P  RY   F G+N  +     A F T++    + LR + V  ++P      + + W  +  R+    D A  +     V+  +H GG V + +AFE+A  ++
Sbjct:   78 VFRNDLELVCDESLRISVGPVVGLVTSTDAIILLETNEA-----------CTMTAHVLLVDDVLPSGREVYKVEQAFPKDRP--YHFRLENLS-----PDCRYKVIFEGVNMEQTLRLQASFKTINPMTQK-LRTITVGNNNPSFYS-DEISTWEVLVKRVT---DPALPK-----VDVLIHCGGQVEMQAAFEDAFAIL 249          
BLAST of mRNA_P-wetherbeei_contig12859.1.1 vs. uniprot
Match: A0A7S4HJI0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HJI0_9EUKA)

HSP 1 Score: 58.5 bits (140), Expect = 1.290e-6
Identity = 44/152 (28.95%), Postives = 66/152 (43.42%), Query Frame = 1
Query:   49 VTILTGPVVGQVTGSAAVILLEIDTATHRRTGERAATAIVTCFLSLVDENCPRGRVVAARTLTLRPRLPAAFVFGVDDVTRSALLPGRRYSACFGGINAREATERLARFSTLDAAPLRPLRLLAVSGDHPQALPPGQPTLWATVADRLEAGD 504
            V +L GPV+G+VT + A++LLE+D             A    +L LV E+     V+     T   R+P  F           L P   Y    GGI  + A        TL   P + LR+  VS D P+    G+  +W  + +R++AG+
Sbjct:   67 VRLLVGPVIGKVTSTTAIVLLEVD-------------ACADIYLHLVPESGGDSIVLEK---TFPERIPTTFYV-------QNLAPDTSYRVAIGGIEGKYARRHTGLIKTLSETPKK-LRIAVVSCDRPERHLEGEQLMWKKIWERVQAGE 194          
BLAST of mRNA_P-wetherbeei_contig12859.1.1 vs. uniprot
Match: A0A7S3XRR2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRR2_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 6.500e-6
Identity = 64/197 (32.49%), Postives = 87/197 (44.16%), Query Frame = 1
Query:   43 EAVTILTGPVVGQVTGSAAVILLEIDTATHRRTGERAATAIVTCFLSLVDENCPRGRVVAARTLTLRPRLPAAFVFGVDDVTRSALLPGRRYSACFGGINAREATERLARFST---LDAAPLRPLRLLAVSGDHPQALPPGQPTLWATV----------ADRLEAGDDAACDEYGYNAVNFTLHLGGHVWLYSAFEE 594
            + V +  GPVVG+VT + AV+LLE+D   H        TA VTC   +V E+   G  V  +T  LR   P AF F         L PGR ++    G+   +A  R   F+T     AAP R  R+  VS   P+ LPPG     + V           D LE   D       ++ ++  +HLG  V L +A  E
Sbjct:  258 DGVRVALGPVVGRVTNTTAVVLLEVD---H--------TAAVTC---VVTESL--GGRVHRQTRRLRRLRPTAFRF-------LGLQPGRHHTLRLEGVE--DAGGRTGGFTTPGAAAAAPARGCRVAFVSHPPPRPLPPGMEDELSGVDFDLGYLTSKTDGLEKLADTLAQ--AWSPIDMVVHLGNQVMLDTAMGE 427          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12859.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G3B9_ECTSI3.230e-3238.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLN7_9STRA4.300e-3241.92Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
F0Y511_AURAN1.430e-2236.63FYVE-type domain-containing protein n=1 Tax=Aureoc... [more]
A0A7S1TYY6_9STRA7.700e-828.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S4HJI0_9EUKA1.290e-628.95Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S3XRR2_HETAK6.500e-632.49Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12859contigP-wetherbeei_contig12859:1225..1911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3B9
Model size609
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.29e-33
EggNOG OGs28PVI@1|root,2QWI5@2759|Eukaryota
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185964.0430913-CDS-P-wetherbeei_contig12859:1224..17591683185964.0430913-CDS-P-wetherbeei_contig12859:1224..1759Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12859 1225..1759 +
1683185964.0542657-CDS-P-wetherbeei_contig12859:1837..19111683185964.0542657-CDS-P-wetherbeei_contig12859:1837..1911Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12859 1838..1911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12859.1.1prot_P-wetherbeei_contig12859.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12859 1225..1911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12859.1.1

>prot_P-wetherbeei_contig12859.1.1 ID=prot_P-wetherbeei_contig12859.1.1|Name=mRNA_P-wetherbeei_contig12859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
SEDVYVNGARLRCDEAVTILTGPVVGQVTGSAAVILLEIDTATHRRTGER
AATAIVTCFLSLVDENCPRGRVVAARTLTLRPRLPAAFVFGVDDVTRSAL
LPGRRYSACFGGINAREATERLARFSTLDAAPLRPLRLLAVSGDHPQALP
PGQPTLWATVADRLEAGDDAACDEYGYNAVNFTLHLGGHVWLYSAFEEAL
ELV
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mRNA from alignment at P-wetherbeei_contig12859:1225..1911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12859.1.1 ID=mRNA_P-wetherbeei_contig12859.1.1|Name=mRNA_P-wetherbeei_contig12859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=687bp|location=Sequence derived from alignment at P-wetherbeei_contig12859:1225..1911+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGAAGACGTCTATGTCAACGGAGCGCGCCTGCGATGCGACGAAGCCGT AACGATACTCACGGGTCCCGTGGTTGGACAGGTGACTGGGAGTGCCGCCG TCATCCTGCTCGAGATAGACACGGCGACGCACCGACGGACAGGCGAGCGG GCGGCCACCGCTATTGTGACATGCTTTCTGTCACTGGTAGACGAGAACTG CCCCCGAGGTCGCGTGGTTGCGGCGCGAACGCTGACGCTGCGACCGAGGC TTCCCGCAGCCTTCGTCTTTGGCGTCGACGATGTAACGAGATCCGCCCTC TTGCCCGGCCGGCGCTATTCTGCCTGCTTCGGAGGCATCAACGCCCGCGA GGCGACGGAGCGCCTCGCGCGCTTTTCGACGCTGGACGCGGCGCCACTCC GACCGCTGCGGCTGCTCGCCGTTAGCGGCGACCACCCTCAGGCGCTGCCG CCGGGCCAGCCCACGCTCTGGGCGACCGTCGCCGACCGCCTGGAGGCCGG CGATGATGCCGCCTGCGACGAATACGGCTACAATGGTTACGGGTACAACA GCTACCGCAACGGGACTACTTCCAGCGATGGCGGCGGCGGCTGCGGCGGC GGCGGACTGCCAGCAGTAAACTTTACACTACACCTAGGAGGGCATGTCTG GTTGTACAGCGCCTTTGAGGAGGCCCTGGAGCTCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12859:1225..1911+

>mRNA_P-wetherbeei_contig12859.1.1 ID=mRNA_P-wetherbeei_contig12859.1.1|Name=mRNA_P-wetherbeei_contig12859.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig12859:1225..1911+ (Phaeothamnion wetherbeei SAG_119_79)
TCCGAAGACGTCTATGTCAACGGAGCGCGCCTGCGATGCGACGAAGCCGT
AACGATACTCACGGGTCCCGTGGTTGGACAGGTGACTGGGAGTGCCGCCG
TCATCCTGCTCGAGATAGACACGGCGACGCACCGACGGACAGGCGAGCGG
GCGGCCACCGCTATTGTGACATGCTTTCTGTCACTGGTAGACGAGAACTG
CCCCCGAGGTCGCGTGGTTGCGGCGCGAACGCTGACGCTGCGACCGAGGC
TTCCCGCAGCCTTCGTCTTTGGCGTCGACGATGTAACGAGATCCGCCCTC
TTGCCCGGCCGGCGCTATTCTGCCTGCTTCGGAGGCATCAACGCCCGCGA
GGCGACGGAGCGCCTCGCGCGCTTTTCGACGCTGGACGCGGCGCCACTCC
GACCGCTGCGGCTGCTCGCCGTTAGCGGCGACCACCCTCAGGCGCTGCCG
CCGGGCCAGCCCACGCTCTGGGCGACCGTCGCCGACCGCCTGGAGGCCGG
CGATGATGCCGCCTGCGACGAATACGGCTACAATGCAGTAAACTTTACAC
TACACCTAGGAGGGCATGTCTGGTTGTACAGCGCCTTTGAGGAGGCCCTG
GAGCTCGTG
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