mRNA_P-wetherbeei_contig12850.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12850.2.1
Unique NamemRNA_P-wetherbeei_contig12850.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: A0A7S2Y1Y3_9STRA (Adenylosuccinate synthetase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Y3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.340e-27
Identity = 54/79 (68.35%), Postives = 67/79 (84.81%), Query Frame = 2 
Query:  158 RLRHNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDK 394
            R  +NG+ L GMPSNL++LSGVEV++ETLPGWKEDI+K +NF  LP  A+AYV RVEQL+G PIRWIGVG GRD+V+D+
Sbjct:  421 RYVYNGKVLKGMPSNLQILSGVEVQYETLPGWKEDITKIRNFEDLPEAAKAYVLRVEQLIGTPIRWIGVGPGRDEVIDR 499
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: A0A836CHU9_9STRA (Adenylosuccinate synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU9_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.560e-26
Identity = 51/76 (67.11%), Postives = 66/76 (86.84%), Query Frame = 2 
Query:  164 RHNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVD 391
            + +G+ L+GMPSNL++LSGVEVE+ET+PGW ED++  K FS LP NARAYV+RVE+L+GVP+RW+GVGAGR  VVD
Sbjct:  356 KSDGKLLAGMPSNLRILSGVEVEYETMPGWTEDLAACKKFSDLPPNARAYVKRVEELIGVPVRWVGVGAGRQHVVD 431
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: A0A836CLA4_9STRA (Adenylosuccinate synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA4_9STRA)

HSP 1 Score: 115 bits (289), Expect = 8.230e-25
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 2 
Query:  170 NGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVD 391
            +G+ L GMPSNLK LSGVEVE+ETLPGW+ED+SK K FS LP  A+A+V+RVE L+GVP+RW+GVGAGR+ VVD
Sbjct:  631 DGKRLKGMPSNLKTLSGVEVEYETLPGWEEDLSKCKRFSDLPPPAQAFVKRVEDLIGVPVRWVGVGAGRECVVD 704
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: A0A6U3BX21_9STRA (Adenylosuccinate synthetase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BX21_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.960e-25
Identity = 46/77 (59.74%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:  164 RHNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDK 394
            ++ GE LS MP++L+VLS VEV++ETLPGW EDIS  K F +LP N + Y+ RV++LLG+PIRWIGVG  R+DV+D+
Sbjct:   61 KYKGETLSSMPASLEVLSNVEVQYETLPGWTEDISTCKTFDELPENCQRYILRVQELLGIPIRWIGVGPNRNDVIDR 137
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: A0A1Z5JBR9_FISSO (Adenylosuccinate synthetase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JBR9_FISSO)

HSP 1 Score: 110 bits (275), Expect = 3.290e-23
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 2 
Query:  164 RHNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDKFV 400
            ++ G+YL  MP+NLKVL  VEVEFE LPGWKEDIS  + F +LP N + Y+ RV++L+GVPIRWIGVG  R DV+D+ V
Sbjct:  431 KYKGKYLDSMPANLKVLEDVEVEFEELPGWKEDISSCRTFEELPMNCQTYILRVQELIGVPIRWIGVGPNRADVIDRGV 509
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: A0A2P6N3I3_9EUKA (Adenylosuccinate synthetase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N3I3_9EUKA)

HSP 1 Score: 109 bits (272), Expect = 5.050e-23
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 2 
Query:  164 RHNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDK 394
            +H G+ L  +P +LKVLS  E+ +ETLPGWK DISKAK +S+LP N R ++ERVEQLL VPIRWIG GAGR+D+V K
Sbjct:  373 KHEGKVLDSVPGDLKVLSEAEIVYETLPGWKTDISKAKTYSELPENCRKFIERVEQLLEVPIRWIGTGAGREDLVIK 449
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: A0A6T5PZ90_HETAK (Adenylosuccinate synthetase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PZ90_HETAK)

HSP 1 Score: 109 bits (272), Expect = 7.250e-23
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = 2 
Query:  158 RLRHNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDKFV 400
            R  + G+ L+GMPSNLK+LS V VE+ETLPGWKEDIS A+ F  LP  A+AYV RVEQL+G P++WIGVG  R+ V+++ V
Sbjct:  417 RYTYKGKALAGMPSNLKILSDVVVEYETLPGWKEDISGARRFEDLPEQAQAYVNRVEQLIGTPVKWIGVGPSREAVIEREV 497
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: B8C8Q6_THAPS (Adenylosuccinate synthetase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8Q6_THAPS)

HSP 1 Score: 108 bits (269), Expect = 9.590e-23
Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 2 
Query:  164 RHNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDK 394
            +HNG+ ++ MPS LK +S +EV +ETLPGW EDISKA+NF  LP NA+ YV RV++LLGVPIRWIG GA R D++D+
Sbjct:  327 KHNGKIINTMPSCLKTMSEIEVIYETLPGWSEDISKARNFEDLPVNAQRYVLRVQELLGVPIRWIGCGANRLDMIDR 403
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: PURA_PHATC (Adenylosuccinate synthetase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=PURA_PHATC)

HSP 1 Score: 108 bits (270), Expect = 1.590e-22
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2 
Query:  167 HNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDK 394
            HNG+YLS MP++L VLS V VE+E LPGW EDIS  K F +LP N + Y+ RV++LLG+PIRWIGVG  R DV+D+
Sbjct:  438 HNGKYLSSMPASLDVLSNVGVEYEVLPGWSEDISNCKKFEELPENCQKYILRVQELLGIPIRWIGVGPNRADVIDR 513
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BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Match: A0A7S3PDE3_9STRA (Adenylosuccinate synthetase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PDE3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.080e-22
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 2 
Query:  164 RHNGEYLSGMPSNLKVLSGVEVEFETLPGWKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDK 394
            ++ G YL+ MP++L+VLS VEVE+E LPGW+EDIS  K F +LP N + Y+ RV++LLG+PIRWIGVG  R DV+D+
Sbjct:  427 KYKGNYLASMPASLEVLSNVEVEYEILPGWEEDISNCKTFEELPENCQKYILRVQELLGIPIRWIGVGPNRADVIDR 503
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12850.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y1Y3_9STRA3.340e-2768.35Adenylosuccinate synthetase n=1 Tax=Fibrocapsa jap... [more]
A0A836CHU9_9STRA1.560e-2667.11Adenylosuccinate synthetase n=1 Tax=Tribonema minu... [more]
A0A836CLA4_9STRA8.230e-2570.27Adenylosuccinate synthetase n=1 Tax=Tribonema minu... [more]
A0A6U3BX21_9STRA9.960e-2559.74Adenylosuccinate synthetase n=1 Tax=Amphiprora pal... [more]
A0A1Z5JBR9_FISSO3.290e-2360.76Adenylosuccinate synthetase n=2 Tax=Fistulifera so... [more]
A0A2P6N3I3_9EUKA5.050e-2363.64Adenylosuccinate synthetase n=1 Tax=Planoprotostel... [more]
A0A6T5PZ90_HETAK7.250e-2360.49Adenylosuccinate synthetase n=1 Tax=Heterosigma ak... [more]
B8C8Q6_THAPS9.590e-2362.34Adenylosuccinate synthetase n=1 Tax=Thalassiosira ... [more]
PURA_PHATC1.590e-2261.84Adenylosuccinate synthetase n=2 Tax=Phaeodactylum ... [more]
A0A7S3PDE3_9STRA7.080e-2258.44Adenylosuccinate synthetase n=1 Tax=Amphora coffei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12850contigP-wetherbeei_contig12850:514..1927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr26256
PFAMsAdenylsucc_synt
Model size1028
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00458,RC00459
KEGG koko:K01939
KEGG ReactionR01135
KEGG Pathwayko00230,ko00250,ko01100,map00230,map00250,map01100
KEGG ModuleM00049
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.62e-26
EggNOG OGsCOG0104@1|root,KOG1355@2759|Eukaryota,2XA6D@2836|Bacillariophyta
EC6.3.4.4
DescriptionPlays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first
Cds size366
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.8062265-UTR-P-wetherbeei_contig12850:513..10751683185963.8062265-UTR-P-wetherbeei_contig12850:513..1075Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12850 514..1075 -
1683185963.8385994-UTR-P-wetherbeei_contig12850:1827..19271683185963.8385994-UTR-P-wetherbeei_contig12850:1827..1927Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12850 1828..1927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.8208218-CDS-P-wetherbeei_contig12850:1075..12821683185963.8208218-CDS-P-wetherbeei_contig12850:1075..1282Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12850 1076..1282 -
1683185963.8297193-CDS-P-wetherbeei_contig12850:1668..18271683185963.8297193-CDS-P-wetherbeei_contig12850:1668..1827Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12850 1669..1827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12850.2.1prot_P-wetherbeei_contig12850.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12850 1076..1827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12850.2.1

>prot_P-wetherbeei_contig12850.2.1 ID=prot_P-wetherbeei_contig12850.2.1|Name=mRNA_P-wetherbeei_contig12850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MFPCGRTMAVINAVTTANDRLRHNGEYLSGMPSNLKVLSGVEVEFETLPG
WKEDISKAKNFSQLPANARAYVERVEQLLGVPIRWIGVGAGRDDVVDKFV
TRPAAAAADGMNGKEASLAAP*
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mRNA from alignment at P-wetherbeei_contig12850:514..1927-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12850.2.1 ID=mRNA_P-wetherbeei_contig12850.2.1|Name=mRNA_P-wetherbeei_contig12850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1414bp|location=Sequence derived from alignment at P-wetherbeei_contig12850:514..1927- (Phaeothamnion wetherbeei SAG_119_79)
GACGGATACCGTTTCGGCATTTGAAAGCTCAAAGTCTCTGGCGTGGGTGA
CGTGGCTGATATAATGGTGTCGTTCGAGTACTGACATCCTTGTTCTCCGG
ATGTTCCCTTGCGGTCGTACTATGGCCGTTATAAATGCTGTTACGACGGC
GAATGACCGTCTCAGGCACAACGGGGAGTACCTCTCGGGCATGCCGTCGA
ACCTCAAGGTGCTGAGCGGCGTCGAGGTCGAGTTTGAGACTTTGCCTGGC
TGGAAAGAGGTGCGTTCGTCGCCGGCAGCCGCCGCCACTGCCAGCTGCCA
TCGTCCGCCGCCGCTCGCCGCCGCCGCCAGCAGTCGCCAGCCGCCGCCAG
CCGCCGCCGCCACCAGCGGACGCTGCCGCTGCAACCGCCGCTGCAACCGC
CGCTACAACCGTCGCTCTTGCCATTTCTGCTGCCATCGTCGCTCAAGCCT
CGCAAAACCGGCCGCCGTTCGACACCGACAGCCGCAGCCGTGTTTCCCGC
ATCCCTCCATCATGCCAGTCTGCTGTCTTTGCCTGAGCTGTTTAATCTGT
TCTGGGTCTAGCCCTAGCTGTGATCGTTTGGATTCTCACACCCTTGCTGC
TCCCATCTATCTGTCACTCTCTTTCTCTCGTTCACGCAACCGCAGGACAT
TTCCAAGGCAAAAAACTTTTCTCAGCTCCCGGCGAACGCGCGGGCGTACG
TGGAGCGCGTAGAGCAGCTCCTCGGCGTACCCATCCGCTGGATCGGCGTC
GGCGCCGGCCGCGACGATGTCGTAGACAAGTTCGTAACACGACCGGCGGC
GGCGGCGGCTGACGGGATGAACGGAAAGGAGGCGTCCTTGGCTGCACCTT
AGGCTGTTCTTGTCTCGCTCGCCGCGTCTGGCGAGCCACCGGCTCGATGC
CGTGGCGGCCGCGGCTGCGGGTGCGCTTGTGGCTACGTCGCGGATATGCC
GCGGCCAGCTCGGATAGAAGCCGGTTGGCGGCGCTTTCGCTGGTGGAATC
CGGCACAGGAAGGAGAGTATGCAGTATCCGCTTGGCTCGCTCTGGAAGGG
AAAAGAGTCAGGACAATGATCGACAGCGTAGTCTGGAGCGTGACTGCTCA
AACGGCAGAGCGGCTCGGGCTCCATTAGTCTAAGGAGTAGTTTTTGTTGT
TACACTGCCTGGTGGCGCCTACTAAATGGAAAGACTGTTGTCTGATGCCT
CGTTTGCAAGAGGCGTTAGACCTCTGCGAGCGCGGCGAGTGCTACGATGA
AGATACAAGTGCACTGGTACGCACCCCGTGGTCTTGCAGGCAAAGACGCG
GCAGAAAAGAGGATCACGCTCGCGCTCCTCTCATTCTGGCATTTCCACTC
CGTCCGGAAGTGCATTGTGCAAAGTAAATTAAACTAAGGCCTGTGAAGGC
CAGACCGCATGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12850:514..1927-

>mRNA_P-wetherbeei_contig12850.2.1 ID=mRNA_P-wetherbeei_contig12850.2.1|Name=mRNA_P-wetherbeei_contig12850.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig12850:514..1927- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCCTTGCGGTCGTACTATGGCCGTTATAAATGCTGTTACGACGGC
GAATGACCGTCTCAGGCACAACGGGGAGTACCTCTCGGGCATGCCGTCGA
ACCTCAAGGTGCTGAGCGGCGTCGAGGTCGAGTTTGAGACTTTGCCTGGC
TGGAAAGAGGACATTTCCAAGGCAAAAAACTTTTCTCAGCTCCCGGCGAA
CGCGCGGGCGTACGTGGAGCGCGTAGAGCAGCTCCTCGGCGTACCCATCC
GCTGGATCGGCGTCGGCGCCGGCCGCGACGATGTCGTAGACAAGTTCGTA
ACACGACCGGCGGCGGCGGCGGCTGACGGGATGAACGGAAAGGAGGCGTC
CTTGGCTGCACCTTAG
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