mRNA_P-wetherbeei_contig1285.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1285.1.1
Unique NamemRNA_P-wetherbeei_contig1285.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1285.1.1 vs. uniprot
Match: A0A835Z0K6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.750e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 SLPRVLGKADDLAYEVEQEIRYEEPGRRTNRVLKPLGLALPGTAPAGDGSG 153
            +LP  +G ADDLAY VEQE+RYE+PGRRT +VL+ +G+ L G A +  G G
Sbjct:  445 ALPAAVGAADDLAYAVEQEVRYEKPGRRTTQVLRRVGIPLSGAAQSALGGG 495
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1285.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0K6_9STRA2.750e-756.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1285contigP-wetherbeei_contig1285:353..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size625
Hectar predicted targeting categoryother localisation
Exons2
Cds size624
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185963.6646602-CDS-P-wetherbeei_contig1285:353..9151683185963.6646602-CDS-P-wetherbeei_contig1285:353..915Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1285 354..915 -
1683185963.6853032-CDS-P-wetherbeei_contig1285:1167..12291683185963.6853032-CDS-P-wetherbeei_contig1285:1167..1229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1285 1168..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1285.1.1prot_P-wetherbeei_contig1285.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1285 354..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1285.1.1

>prot_P-wetherbeei_contig1285.1.1 ID=prot_P-wetherbeei_contig1285.1.1|Name=mRNA_P-wetherbeei_contig1285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=208bp
SLPRVLGKADDLAYEVEQEIRYEEPGRRTNRVLKPLGLALPGTAPAGDGS
GLLLPTGDETDTAASALTLPPAAGRTAPASAPRLLPLQAAVVSKEDAEAI
EVGALSAAADTLTAAATTAAAVVVAAATAASANTSTTSSAVADPIVRARG
SGQGDSAAASGGAVGGWTQLLESMGWSQRRGAAASADRGGGGGAATGVAA
APVIVGLA
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mRNA from alignment at P-wetherbeei_contig1285:353..1229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1285.1.1 ID=mRNA_P-wetherbeei_contig1285.1.1|Name=mRNA_P-wetherbeei_contig1285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=877bp|location=Sequence derived from alignment at P-wetherbeei_contig1285:353..1229- (Phaeothamnion wetherbeei SAG_119_79)
TCTCTCCCGCGGGTGCTCGGGAAGGCAGACGATTTGGCTTACGAAGTTGA
GCAGGAGATCAGGTGTGGTCCGTTGGCTGATAGACCTTTCATGTATCACG
GCAGGAGGGCTTCACATCTTGCACTGTCCTTTATTTTATCACAGCAAGGT
TCATCTCTTACTTTCTGGCCCATTTATTCGTTTATATGGCAGTTGGTTCT
CCATGCGCCTTTCAAAAGAATTGTCTCTGTTTGTTTCTGCGCTCTGTTCG
AGGGAGCAACCTGGAGTGAATTGAAGGCAGCTTCTTCCGTCTCGCTTTCT
CACCTCCCCGGCAGATACGAAGAGCCGGGCCGGCGAACCAACCGCGTCCT
CAAGCCGCTGGGACTGGCGCTGCCTGGGACGGCGCCCGCCGGGGACGGCA
GCGGACTGCTGCTGCCGACGGGCGACGAAACAGATACGGCAGCGAGCGCA
TTAACGCTGCCGCCAGCGGCCGGGAGGACAGCGCCGGCGTCGGCGCCACG
GCTACTGCCTCTACAGGCCGCCGTCGTTTCTAAGGAGGACGCGGAAGCGA
TCGAGGTGGGAGCGCTGTCTGCAGCAGCTGATACGTTGACTGCAGCGGCG
ACTACCGCAGCAGCGGTGGTGGTGGCAGCGGCGACAGCGGCTTCGGCGAA
TACAAGTACTACCAGCTCCGCTGTTGCCGACCCCATCGTGAGAGCGAGAG
GTAGCGGACAGGGCGACAGTGCCGCCGCCTCGGGCGGCGCCGTGGGAGGG
TGGACGCAACTGCTGGAATCCATGGGCTGGTCGCAGAGAAGAGGAGCCGC
CGCCTCAGCCGACCGCGGCGGCGGCGGCGGCGCGGCGACGGGAGTGGCGG
CGGCGCCGGTCATCGTCGGTCTGGCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1285:353..1229-

>mRNA_P-wetherbeei_contig1285.1.1 ID=mRNA_P-wetherbeei_contig1285.1.1|Name=mRNA_P-wetherbeei_contig1285.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=624bp|location=Sequence derived from alignment at P-wetherbeei_contig1285:353..1229- (Phaeothamnion wetherbeei SAG_119_79)
TCTCTCCCGCGGGTGCTCGGGAAGGCAGACGATTTGGCTTACGAAGTTGA
GCAGGAGATCAGATACGAAGAGCCGGGCCGGCGAACCAACCGCGTCCTCA
AGCCGCTGGGACTGGCGCTGCCTGGGACGGCGCCCGCCGGGGACGGCAGC
GGACTGCTGCTGCCGACGGGCGACGAAACAGATACGGCAGCGAGCGCATT
AACGCTGCCGCCAGCGGCCGGGAGGACAGCGCCGGCGTCGGCGCCACGGC
TACTGCCTCTACAGGCCGCCGTCGTTTCTAAGGAGGACGCGGAAGCGATC
GAGGTGGGAGCGCTGTCTGCAGCAGCTGATACGTTGACTGCAGCGGCGAC
TACCGCAGCAGCGGTGGTGGTGGCAGCGGCGACAGCGGCTTCGGCGAATA
CAAGTACTACCAGCTCCGCTGTTGCCGACCCCATCGTGAGAGCGAGAGGT
AGCGGACAGGGCGACAGTGCCGCCGCCTCGGGCGGCGCCGTGGGAGGGTG
GACGCAACTGCTGGAATCCATGGGCTGGTCGCAGAGAAGAGGAGCCGCCG
CCTCAGCCGACCGCGGCGGCGGCGGCGGCGCGGCGACGGGAGTGGCGGCG
GCGCCGGTCATCGTCGGTCTGGCG
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