mRNA_P-wetherbeei_contig1276.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1276.1.1
Unique NamemRNA_P-wetherbeei_contig1276.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: S4XYI5_SORCE (S-adenosyl-L-methionine-dependent methyltransferase n=3 Tax=Sorangium cellulosum TaxID=56 RepID=S4XYI5_SORCE)

HSP 1 Score: 58.2 bits (139), Expect = 2.610e-7
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 3
Query:  249 TERVAVAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSP 425
            +ERVA+AA+L+  +WPAAL AA + P+ R+VW++EGL+ Y++G  V  L+  ID +++P
Sbjct:  124 SERVAIAADLAS-DWPAALRAARFDPAARTVWLVEGLLQYLDGRAVETLMSRIDRLSAP 181          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: I9KE27_9ACTN (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Frankia sp. QA3 TaxID=710111 RepID=I9KE27_9ACTN)

HSP 1 Score: 57.8 bits (138), Expect = 3.890e-7
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  252 ERVAVAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            ERVAV A+L+G +W  AL  AG  P ER+ W++EGL+ Y++ E   RLL T+  +++PG
Sbjct:  144 ERVAVPADLAG-DWATALTRAGLRPRERTTWLVEGLLPYLDAEQAARLLTTVGQLSAPG 201          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: A0A1I1UL57_9DELT (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I1UL57_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 4.630e-7
Identity = 27/59 (45.76%), Postives = 44/59 (74.58%), Query Frame = 3
Query:  252 ERVAVAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            ERVAVA +L+G +WP AL AAG+  S+RS+W++EGL+ Y++ + V  L   ++ +++PG
Sbjct:  112 ERVAVATDLAG-DWPHALLAAGFDRSQRSLWLVEGLLQYLDAQVVAALFARVEGLSAPG 169          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: UPI001B372F62 (SAM-dependent methyltransferase n=1 Tax=Micromonospora sp. C51 TaxID=2824879 RepID=UPI001B372F62)

HSP 1 Score: 57.8 bits (138), Expect = 5.630e-7
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  255 RVAVAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            RV++ A+L    WP  L AAGY P E++VW++EGL+ Y+E ED  RL+ T+  M++ G
Sbjct:  569 RVSLGADLRHDTWPQRLRAAGYEPDEQTVWIIEGLLPYLEIEDFTRLIGTVRKMSTRG 626          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: A0A5A7YVI1_9MYCO (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Mycolicibacterium sp. P9-22 TaxID=2024613 RepID=A0A5A7YVI1_9MYCO)

HSP 1 Score: 55.1 bits (131), Expect = 3.420e-6
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:  249 TERVAVAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            T RVAV  +L+  +WP AL +AG+ P   SVW++EGL+ Y++  +V  L   +DA+++PG
Sbjct:  128 TSRVAVGVDLAD-DWPPALTSAGFDPGAPSVWLMEGLLQYLDEAEVRALFARVDALSAPG 186          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: UPI0013B368BE (SAM-dependent methyltransferase n=1 Tax=Nonomuraea lactucae TaxID=2249762 RepID=UPI0013B368BE)

HSP 1 Score: 55.1 bits (131), Expect = 3.900e-6
Identity = 23/47 (48.94%), Postives = 35/47 (74.47%), Query Frame = 3
Query:  288 EWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            +WPAAL AAG+ P E +VW+ EGL+MY+  ED  +L+ T+  +++PG
Sbjct:  173 DWPAALLAAGFDPGESTVWLAEGLLMYLSPEDADQLMATLTGLSAPG 219          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: A0A6G3D6B2_9ACTN (S-adenosyl-L-methionine-dependent methyltransferase n=7 Tax=Streptomyces TaxID=1883 RepID=A0A6G3D6B2_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 4.850e-6
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 3
Query:  252 ERVAVAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            ER+AVAA+L   +WP+AL AAG+ P+  +VW+ EGL++Y+  +DV  LL  I A ++ G
Sbjct:  142 ERIAVAADLRA-DWPSALVAAGHDPAAPTVWIAEGLLIYLSDDDVELLLDRIGAQSAAG 199          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: A0A1Q7AT77_9ACTN (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Actinobacteria bacterium 13_2_20CM_2_72_6 TaxID=1803495 RepID=A0A1Q7AT77_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 5.060e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 3
Query:  264 VAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            VA +L    W  AL  AGY P+  SVW+LEGL+ Y+E + V RLL T+  +T+PG
Sbjct:  150 VAVDLVAPGWERALVEAGYDPARPSVWLLEGLLYYIEEDQVRRLLHTVRTVTAPG 204          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: A0A1X0D953_9MYCO (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Mycobacterium heidelbergense TaxID=53376 RepID=A0A1X0D953_9MYCO)

HSP 1 Score: 54.3 bits (129), Expect = 6.430e-6
Identity = 25/58 (43.10%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  255 RVAVAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            RVAV  +L+  +WP  L + G++P+ RSVW++EGL+ Y++  DV  L   ID +++PG
Sbjct:  130 RVAVGVDLAD-DWPKTLLSHGFSPTSRSVWLIEGLLQYLQASDVDALFARIDTLSAPG 186          
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Match: A0A8K1CTB3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTB3_PYTOL)

HSP 1 Score: 54.3 bits (129), Expect = 7.030e-6
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  252 ERVAVAANLSGHEWPAALAAAGYAPSERSVWVLEGLVMYMEGEDVLRLLRTIDAMTSPG 428
            E   V ANL+   W A L   G+ P+ER+ W+LEGL+MY+E E  + L++ ID++++PG
Sbjct:  146 EHHVVVANLAEEAWKAELINNGFNPNERTFWLLEGLMMYIEYEGNVGLVKAIDSLSAPG 204          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1276.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
S4XYI5_SORCE2.610e-747.46S-adenosyl-L-methionine-dependent methyltransferas... [more]
I9KE27_9ACTN3.890e-747.46S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1I1UL57_9DELT4.630e-745.76S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI001B372F625.630e-746.55SAM-dependent methyltransferase n=1 Tax=Micromonos... [more]
A0A5A7YVI1_9MYCO3.420e-643.33S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI0013B368BE3.900e-648.94SAM-dependent methyltransferase n=1 Tax=Nonomuraea... [more]
A0A6G3D6B2_9ACTN4.850e-647.46S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1Q7AT77_9ACTN5.060e-649.09S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1X0D953_9MYCO6.430e-643.10S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A8K1CTB3_PYTOL7.030e-644.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1276contigP-wetherbeei_contig1276:967..1738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1348663.KCH_60980
PFAMsLCM
Model size428
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.00053
EggNOG OGsCOG3315@1|root,COG3315@2|Bacteria,2GKDZ@201174|Actinobacteria,2M4S5@2063|Kitasatospora
DescriptionExhibits S-adenosyl-L-methionine-dependent methyltransferase activity
Cds size381
COG categoryH
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185960.2019312-UTR-P-wetherbeei_contig1276:966..10021683185960.2019312-UTR-P-wetherbeei_contig1276:966..1002Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1276 967..1002 +
1683185960.2303755-UTR-P-wetherbeei_contig1276:1727..17381683185960.2303755-UTR-P-wetherbeei_contig1276:1727..1738Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1276 1728..1738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185960.2129898-CDS-P-wetherbeei_contig1276:1002..11521683185960.2129898-CDS-P-wetherbeei_contig1276:1002..1152Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1276 1003..1152 +
1683185960.2217388-CDS-P-wetherbeei_contig1276:1496..17271683185960.2217388-CDS-P-wetherbeei_contig1276:1496..1727Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1276 1497..1727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1276.1.1prot_P-wetherbeei_contig1276.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1276 1003..1727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1276.1.1

>prot_P-wetherbeei_contig1276.1.1 ID=prot_P-wetherbeei_contig1276.1.1|Name=mRNA_P-wetherbeei_contig1276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MDRSNRHSEARQAVAETAGPKGARQVVLLGAGMDSRALRLPLPPGTKVRQ
RRPLPAVAAAAAATATAAAATRSVWQWRRTCLATSGRRRWRRPDTRRRSA
VCGCWKGSSCTWRARTCCGCYGRSMP*
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mRNA from alignment at P-wetherbeei_contig1276:967..1738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1276.1.1 ID=mRNA_P-wetherbeei_contig1276.1.1|Name=mRNA_P-wetherbeei_contig1276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=772bp|location=Sequence derived from alignment at P-wetherbeei_contig1276:967..1738+ (Phaeothamnion wetherbeei SAG_119_79)
GGCCATCGTCTCCTTGATCCCGTTGTTGACCGACCGATGGATCGATCGAA TCGGCACTCTGAGGCAAGGCAGGCGGTGGCCGAGACGGCGGGCCCCAAGG GAGCGCGGCAGGTGGTGCTGCTCGGCGCTGGCATGGACAGCCGGGCACTG CGGCTGCCGCTGCCGCCGGGCACGAAGGTGCGTCAAGTTTTCAAAAATCA GCCGCCGCAACCGCTCTTTAGCGCATCGCTCCATCCGCCACTGCCAAAAC TGTTCATCGCCGCCGCCGTCGCCGCCGCCGCTACGAGCTATGGCATCCGT TTTTACGTGTGGTGCTTACGATATTTGTTCTTTACGTACAACTGGCATTG CAAGCAGCCGTCGCGTCCCGCTAGAGCTCCAGATGCACCGCTGAACGGAC CTGCGCCCCTCTCCTCCCTTCCTCGCGTTGCTTCAGGTGTTTGAGATTGA CCAGGCGGCTGTCCTCCAGGCGAAGGAACGCCTCCTCGCCGACTACGCCG CGACGAAATTCGCGACATTATCGTCGGCAGCGACGGCCTCTTCCAGCAGT AGCAGCGGCGGCGGCGGCGACAGCGACGGCGGCGGCGGCGACACGGAGCG TGTGGCAGTGGCGGCGAACCTGTCTGGCCACGAGTGGCCGGCGGCGCTGG CGGCGGCCGGATACGCGCCGTCGGAGCGCAGTGTGTGGGTGCTGGAAGGG CTCGTCATGTACATGGAGGGCGAGGACGTGCTGCGGTTGCTACGGACGAT CGATGCCATGACCAGCCCTGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1276:967..1738+

>mRNA_P-wetherbeei_contig1276.1.1 ID=mRNA_P-wetherbeei_contig1276.1.1|Name=mRNA_P-wetherbeei_contig1276.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig1276:967..1738+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCGATCGAATCGGCACTCTGAGGCAAGGCAGGCGGTGGCCGAGAC
GGCGGGCCCCAAGGGAGCGCGGCAGGTGGTGCTGCTCGGCGCTGGCATGG
ACAGCCGGGCACTGCGGCTGCCGCTGCCGCCGGGCACGAAGGTGCGTCAA
CGACGGCCTCTTCCAGCAGTAGCAGCGGCGGCGGCGGCGACAGCGACGGC
GGCGGCGGCGACACGGAGCGTGTGGCAGTGGCGGCGAACCTGTCTGGCCA
CGAGTGGCCGGCGGCGCTGGCGGCGGCCGGATACGCGCCGTCGGAGCGCA
GTGTGTGGGTGCTGGAAGGGCTCGTCATGTACATGGAGGGCGAGGACGTG
CTGCGGTTGCTACGGACGATCGATGCCATGA
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