mRNA_P-wetherbeei_contig12756.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12756.1.1
Unique NamemRNA_P-wetherbeei_contig12756.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12756.1.1 vs. uniprot
Match: D8LNK7_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK7_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.630e-17
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 1 
Query:    1 MTGHASIVVDDARMVVIGGGNKRQFHSCRHVMVYDSREDTWGRHAACGDAPVTLIYHTVVAVDR-----RRLVVYGGSVQGAQEGIDPLLWVFDTLT 276
            +TGH +  V  +RM+V+GGGN RQFHSCRHV+VYD  E TW + A  G+AP  LIYH+  A++      R L+V+GG+        D  + V D LT
Sbjct:  847 VTGHTATAVLGSRMMVLGGGNIRQFHSCRHVLVYDPIERTWSKLATRGNAPSALIYHSTTALEPPWGTPRNLLVFGGNSNPRNTNTD--VSVLDCLT 941
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BLAST of mRNA_P-wetherbeei_contig12756.1.1 vs. uniprot
Match: A0A6H5K536_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K536_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.720e-16
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 1 
Query:    1 MTGHASIVVDDARMVVIGGGNKRQFHSCRHVMVYDSREDTWGRHAACGDAPVTLIYHTVVAVDR-----RRLVVYGGSVQGAQEGIDPL----LWVFDTLTMSW 285
            +TGH +  V  +RM+V+GGGN RQFHSCRHV+VYD  E TW +    G+AP  LIYH+  A++      R L+V GG+       I+ +    + V D LTM W
Sbjct:  921 VTGHTATAVLGSRMMVLGGGNIRQFHSCRHVLVYDPIERTWSKLDTRGNAPSALIYHSTTALEPPWGAPRNLLVCGGNTN--PRNINAISQTQVSVLDCLTMEW 1022
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BLAST of mRNA_P-wetherbeei_contig12756.1.1 vs. uniprot
Match: K3WMT4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMT4_GLOUD)

HSP 1 Score: 56.2 bits (134), Expect = 3.960e-7
Identity = 30/97 (30.93%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:    7 GHASIVVDDARMVVIGGGNKRQFHSCRHVMVYDSREDTWGRHAACGDAPVTLIYHTVVAVDRRRLVVYGGSVQGAQEGIDPL----LWVFDTLTMSW 285
            GH++  +DDARMV+ GG + ++  S   + ++D+   TW +    G  P +   H++VA+ R  L+VYGG      +   P+    +++ DT T++W
Sbjct:  161 GHSAASIDDARMVLFGGWDGKK--SMNDLWIFDTNTFTWTKPKCAGKFPTSRHNHSMVAISRETLLVYGGYTVLMPDVPLPVYNKDVYLLDTTTLTW 255
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12756.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNK7_ECTSI5.630e-1746.39BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K536_9PHAE2.720e-1644.23BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
K3WMT4_GLOUD3.960e-730.93Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12756contigP-wetherbeei_contig12756:9..293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LNK7
Preferred nameLRRIQ1
PFAMsBTB,IQ,LRR_8
Model size285
Max annot lvl2759|Eukaryota
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.23e-18
EggNOG OGsCOG4886@1|root,KOG0531@2759|Eukaryota
Ec32 ortholog descriptionBTB/POZ fold
Ec32 orthologEc-22_002910.2
Descriptionaxoneme assembly
Cds size285
COG categoryL
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185960.0742416-CDS-P-wetherbeei_contig12756:8..2931683185960.0742416-CDS-P-wetherbeei_contig12756:8..293Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12756 9..293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12756.1.1prot_P-wetherbeei_contig12756.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12756 9..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12756.1.1

>prot_P-wetherbeei_contig12756.1.1 ID=prot_P-wetherbeei_contig12756.1.1|Name=mRNA_P-wetherbeei_contig12756.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MTGHASIVVDDARMVVIGGGNKRQFHSCRHVMVYDSREDTWGRHAACGDA
PVTLIYHTVVAVDRRRLVVYGGSVQGAQEGIDPLLWVFDTLTMSW
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mRNA from alignment at P-wetherbeei_contig12756:9..293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12756.1.1 ID=mRNA_P-wetherbeei_contig12756.1.1|Name=mRNA_P-wetherbeei_contig12756.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig12756:9..293- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGGCCACGCCTCTATCGTGGTGGACGACGCCCGCATGGTGGTGAT
CGGCGGCGGCAACAAGCGGCAGTTCCACAGCTGCCGCCATGTCATGGTCT
ACGACTCGCGGGAGGACACGTGGGGCCGCCACGCCGCCTGCGGGGACGCG
CCGGTGACGCTCATCTACCACACCGTCGTGGCAGTGGACCGGCGGCGGCT
GGTGGTGTACGGCGGCAGCGTACAGGGCGCCCAGGAAGGCATCGACCCGC
TGCTGTGGGTCTTCGACACGCTCACCATGTCGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12756:9..293-

>mRNA_P-wetherbeei_contig12756.1.1 ID=mRNA_P-wetherbeei_contig12756.1.1|Name=mRNA_P-wetherbeei_contig12756.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig12756:9..293- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGGCCACGCCTCTATCGTGGTGGACGACGCCCGCATGGTGGTGAT
CGGCGGCGGCAACAAGCGGCAGTTCCACAGCTGCCGCCATGTCATGGTCT
ACGACTCGCGGGAGGACACGTGGGGCCGCCACGCCGCCTGCGGGGACGCG
CCGGTGACGCTCATCTACCACACCGTCGTGGCAGTGGACCGGCGGCGGCT
GGTGGTGTACGGCGGCAGCGTACAGGGCGCCCAGGAAGGCATCGACCCGC
TGCTGTGGGTCTTCGACACGCTCACCATGTCGTGG
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