mRNA_P-wetherbeei_contig12746.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12746.1.1
Unique NamemRNA_P-wetherbeei_contig12746.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA)

HSP 1 Score: 197 bits (501), Expect = 5.140e-61
Identity = 84/150 (56.00%), Postives = 114/150 (76.00%), Query Frame = 1
Query:    1 YATEAEARQSCQAYAPPKWSEGTSPCCSVCRGHYGLLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSALLRGDEVAARTLYSRGCINLRCPYTIYDNELPLHCAAKSGSIPLLSWLLEDRHCPM 450
            Y T   A ++C+A+A PK  +  +  C++C+ ++G+L+RRRHHCRNCGR VC  C+   WP++MLPFTY A K +RK R+CDTC  + E FR+ALL GD+ AAR  Y RGC+NLRCPY+IY N LP+HCAA+ GS+ LL+WLLE++HCP+
Sbjct:   13 YETPDAAEEACKAFAVPK--KQNAALCALCKSYFGMLSRRRHHCRNCGRAVCDACAKTSWPSSMLPFTYSAAKQERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLNGLPVHCAAEGGSMALLAWLLEEKHCPL 160          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.090e-53
Identity = 76/151 (50.33%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 YATEAEARQSCQAYAPPKWSE-GTSPCCSVCRGHYGLLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSALLRGDEVAARTLYSRGCINLRCPYTIYDNELPLHCAAKSGSIPLLSWLLEDRHCPM 450
            Y T  E +++ ++++PP W E G    C+VC   +G + +RRHHCRNCGR VCS C++R WP +MLP TY  D +++K RVC +C+ + EDFR A L G E  A   +S GC+NLR PYTIY NELP+HCAA  G++ +L+WL++DR CP+
Sbjct:   31 YDTAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPL 181          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.780e-51
Identity = 78/151 (51.66%), Postives = 107/151 (70.86%), Query Frame = 1
Query:    1 YATEAEARQSCQAYAPPKWSE-GTSPCCSVCRGHYGLLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSALLRGDEVAARTLYSRGCINLRCPYTIYDNELPLHCAAKSGSIPLLSWLLEDRHCPM 450
            Y T  E +++ ++++PP W E G    C+VC   +G + +RRHHCRNCGR VCS C++R WP +MLP TY  D +++K RVC TC+V+ EDFR A L G E  A   +S GC+NLR PYTIY NELP+HCAA  G++ +L+WL++DR CP+
Sbjct:  355 YDTAYEGQRAAESFSPPLWQEPGKDSRCAVCDSTFGYVLKRRHHCRNCGRLVCSACAERFWPRSMLPPTYNVDTSEKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPL 505          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 5.330e-39
Identity = 71/152 (46.71%), Postives = 98/152 (64.47%), Query Frame = 1
Query:    1 YATEAEARQSCQAYAPPKWSEGT-SPCCSVCRGHYG-LLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSALLRGDEVAARTLYSRGCINLRCPYTIYDNELPLHCAAKSGSIPLLSWLLEDRHCPM 450
            +AT  EA ++ +A++ P W E T +  C+ C+  +  +L RRRHHCRNCGR VC+ C+ R WP  MLP +Y     +R+ RVC TC+   + FR ALLRG    A   +  GC+NLR P++  D ELP+HCAA  G++ L+ WLLEDR CP+
Sbjct:  494 FATSYEADRAAEAFSSPVWHEPTPNSTCAECQSVFRPVLQRRRHHCRNCGRLVCTTCALRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLLEDRCCPI 643          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.600e-38
Identity = 68/152 (44.74%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    1 YATEAEARQSCQAYAPPKWSEGT-SPCCSVCRGHYG-LLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSALLRGDEVAARTLYSRGCINLRCPYTIYDNELPLHCAAKSGSIPLLSWLLEDRHCPM 450
            +AT  EA ++ + ++ P W E T +  C+ C+  +  +  RR+HHCRNCGR VC+ C+ R WP  MLP +Y     +R+ RVC TC+   + FR ALLRG    A   Y  GC+NLR P++  D ELP+HCAA  G++ L+ WL+EDR CP+
Sbjct:  564 FATSYEADRAAETFSSPVWHEPTPNSTCAECQSSFRPVFQRRKHHCRNCGRLVCTTCAWRFWPKHMLPHSYRTSSTERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLVEDRCCPI 713          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: A0A482RTU5_9ARCH (FYVE-type domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTU5_9ARCH)

HSP 1 Score: 129 bits (325), Expect = 5.900e-33
Identity = 66/142 (46.48%), Postives = 85/142 (59.86%), Query Frame = 1
Query:   31 CQAYAPPKWS-EGTSPCCSVCRGHYGLLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSALLRGDEVAARTLYSRGCINLRCPYTIYDN-ELPLHCAAKSGSIPLLSWLLEDRHCPM 450
            C + APP W  +  S  C +CR  + +  R+ HHCRNCG  VC +CSDR WPA MLP TY     ++  RVC  CH+ +E F  AL RGD   A +LYS G INL  P T++ +   P+H A   GS+PLL WLLE + C +
Sbjct:  217 CVSAAPPLWRPKQASLTCVLCRTGFSMF-RKPHHCRNCGHIVCPDCSDRLWPAGMLPSTY--HDQEKVVRVCYACHLLLEHFVLALKRGDLDEALSLYSSGNINLHQPLTVFQHWAYPVHLACSGGSLPLLQWLLEVKRCSL 355          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: A0A7S3HL29_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HL29_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.420e-28
Identity = 65/152 (42.76%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   16 EARQSCQA----YAPPKWSEGTSP-CCSVCRGHYGLLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSALLRG--DEVAARTLYSRGCINLRCPYTIY-DNELPLHCAAKSGSIPLLSWLLEDRHCP 447
            E++  C+A    YAPP  ++      C VC   +    +  H C NCG+ VC++CSD  WP +MLP TY ++K   KARVC  C+  ME   +AL  G  DEV A  L+  G +N   P T+Y D   P+HCAA SG++ LL WL+E +HCP
Sbjct:  152 ESKAQCEAITAAYAPPVMADSKKKTACKVCEEAFNKYLKPEH-CHNCGQMVCADCSDESWPRSMLPHTYFSEKKG-KARVCSACNQLMEKLVTALKAGNMDEVIA--LHEIGNVNFHFPLTVYPDAPYPIHCAAGSGNVGLLEWLVEKQHCP 299          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: F0W4B7_9STRA (Uncharacterized protein AlNc14C16G1788 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4B7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.040e-9
Identity = 35/81 (43.21%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   46 PPKWSEGTSPCCSVCRGHYG-LLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSAL 285
            PP ++  T   C  CR   G LLTR RHHCRNCG   CSNCS +     ++PF     K ++  RVCD+C+  +++F S L
Sbjct:  149 PPPFANMTF--CDNCREDIGTLLTRGRHHCRNCGGSFCSNCSSKM---IVVPFQVFLSKGEQ--RVCDSCYYRIKEFHSQL 222          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: A0A662X7B6_9STRA (FYVE-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X7B6_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.780e-9
Identity = 35/89 (39.33%), Postives = 44/89 (49.44%), Query Frame = 1
Query:   46 PPKW-SEGTSPCCSVCRGHYGLLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYM-------ADKNDRKARVCDTCH-VSMEDFRSAL 285
            PP W  +   P C  C   +G L  RRHHCR CGR +CS CS+    A  LPF          A+K    +RVC TC+ + ME    A+
Sbjct:  264 PPVWVPDNARPTCMECHKKFGSLGTRRHHCRMCGRVLCSACSNCHIRAKKLPFPARRRGKKNKAEKGSTNSRVCTTCYEICMEGGMQAV 352          
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Match: A0A662XEQ0_9STRA (FYVE-type domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XEQ0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.510e-9
Identity = 35/89 (39.33%), Postives = 44/89 (49.44%), Query Frame = 1
Query:   46 PPKW-SEGTSPCCSVCRGHYGLLTRRRHHCRNCGRYVCSNCSDRQWPAAMLPFTYM-------ADKNDRKARVCDTCH-VSMEDFRSAL 285
            PP W  +   P C  C   +G L  RRHHCR CGR +CS CS+    A  LPF          A+K    +RVC TC+ + ME    A+
Sbjct:  382 PPVWVPDNARPTCMECHKKFGSLGTRRHHCRMCGRVLCSACSNCHIRAKKLPFPARRRGKKNKAEKGSTNSRVCTTCYEICMEGGMQAV 470          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12746.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC14_9STRA5.140e-6156.00FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
D8LDM9_ECTSI1.090e-5350.33FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KTC5_9PHAE2.780e-5151.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI5.330e-3946.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUU5_9PHAE2.600e-3844.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482RTU5_9ARCH5.900e-3346.48FYVE-type domain-containing protein (Fragment) n=1... [more]
A0A7S3HL29_9STRA1.420e-2842.76Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0W4B7_9STRA2.040e-943.21Uncharacterized protein AlNc14C16G1788 n=1 Tax=Alb... [more]
A0A662X7B6_9STRA5.780e-939.33FYVE-type domain-containing protein n=1 Tax=Nothop... [more]
A0A662XEQ0_9STRA6.510e-939.33FYVE-type domain-containing protein n=1 Tax=Nothop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12746contigP-wetherbeei_contig12746:254..1359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDM9
PFAMsFYVE,UPRTase
Model size450
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.78e-54
EggNOG OGsKOG1729@1|root,KOG1729@2759|Eukaryota
Descriptionlipid binding
Cds size450
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.6428041-CDS-P-wetherbeei_contig12746:253..5011683185959.6428041-CDS-P-wetherbeei_contig12746:253..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12746 254..501 +
1683185959.653434-CDS-P-wetherbeei_contig12746:819..9301683185959.653434-CDS-P-wetherbeei_contig12746:819..930Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12746 820..930 +
1683185959.6608438-CDS-P-wetherbeei_contig12746:1268..13591683185959.6608438-CDS-P-wetherbeei_contig12746:1268..1359Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12746 1269..1359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12746.1.1prot_P-wetherbeei_contig12746.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12746 254..1359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12746.1.1

>prot_P-wetherbeei_contig12746.1.1 ID=prot_P-wetherbeei_contig12746.1.1|Name=mRNA_P-wetherbeei_contig12746.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
YATEAEARQSCQAYAPPKWSEGTSPCCSVCRGHYGLLTRRRHHCRNCGRY
VCSNCSDRQWPAAMLPFTYMADKNDRKARVCDTCHVSMEDFRSALLRGDE
VAARTLYSRGCINLRCPYTIYDNELPLHCAAKSGSIPLLSWLLEDRHCPM
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mRNA from alignment at P-wetherbeei_contig12746:254..1359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12746.1.1 ID=mRNA_P-wetherbeei_contig12746.1.1|Name=mRNA_P-wetherbeei_contig12746.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1106bp|location=Sequence derived from alignment at P-wetherbeei_contig12746:254..1359+ (Phaeothamnion wetherbeei SAG_119_79)
TACGCGACGGAGGCGGAGGCGCGGCAGTCCTGTCAGGCATACGCGCCGCC GAAGTGGTCGGAGGGTACGTCGCCATGCTGCAGCGTCTGCCGCGGCCACT ACGGCCTGCTGACGCGACGGCGGCACCACTGCCGCAATTGCGGCCGATAC GTGTGCTCCAACTGCAGCGACCGGCAGTGGCCAGCGGCGATGTTGCCGTT CACGTACATGGCCGACAAGAACGACCGCAAGGCGCGGGTCTGCGACACGT GAGCCAGCCGTTTTTGTTTTGTTTTGCACGATAGAGCTATTGTCACTCTT TTCCTCGTGCACTTTTTGCCACTGCATTGCTTTGCTTTGGGATGGAGTTT TTTTTGCTGTTCTGTCATGCTTGTGTTCGCTCTGTTTTCAACCTCTCTCT TTCCAGTTCTTGTCATGTTTGTGATACCACAGGCTCTCTTTTCTTCCTTT TGCCGCGAAATCCTGCGTGCTGTTACCGCCGCCCTGTTCCACCCATCCCT TCAGTAATCCGTTCTCTCCGTGTAACGCTTCATGATCCTTCCTGCGCTCC GGCTCCCACGCCTCAGATGTCACGTCTCGATGGAGGACTTTCGGTCGGCG CTGCTGCGCGGCGATGAGGTGGCGGCGCGGACGCTCTATTCGCGCGGCTG CATTAACCTCAGATGTCCCTACACGATGTGCGTCGCAGTTTCATACAAGC CTGCTTCGATGCAGCGGTGGAATGCCCTCAGGCTTTTGCCTTTTGTATCC GGTAGACCTTCCCATTTAGCTGCTCGGCATTCCATCTTATATGGCTGGCG GCACGTTATGGTCTAAAGTTGAAGCACCGCTGTTCTGTGTTGCTGCGTAG CAGCCAAGAGACATGAGCCGATCTTTCACAGCAGCTAACCTTCAGCCACC GTGCTACATTTTCGCCGCATCACATTCTTAATGCTGACGCTGCCGTTGCC GCTGCGTGTTGCCACTGCCCATTGCCGCCGCCCCTTCTGCCACTGCCGCC GCTTCGGGTCCACAGCTACGACAACGAGCTGCCGCTGCACTGCGCGGCCA AGTCTGGCAGCATTCCCCTGCTGTCATGGCTCCTCGAGGACCGCCACTGT CCCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12746:254..1359+

>mRNA_P-wetherbeei_contig12746.1.1 ID=mRNA_P-wetherbeei_contig12746.1.1|Name=mRNA_P-wetherbeei_contig12746.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig12746:254..1359+ (Phaeothamnion wetherbeei SAG_119_79)
TACGCGACGGAGGCGGAGGCGCGGCAGTCCTGTCAGGCATACGCGCCGCC
GAAGTGGTCGGAGGGTACGTCGCCATGCTGCAGCGTCTGCCGCGGCCACT
ACGGCCTGCTGACGCGACGGCGGCACCACTGCCGCAATTGCGGCCGATAC
GTGTGCTCCAACTGCAGCGACCGGCAGTGGCCAGCGGCGATGTTGCCGTT
CACGTACATGGCCGACAAGAACGACCGCAAGGCGCGGGTCTGCGACACAT
GTCACGTCTCGATGGAGGACTTTCGGTCGGCGCTGCTGCGCGGCGATGAG
GTGGCGGCGCGGACGCTCTATTCGCGCGGCTGCATTAACCTCAGATGTCC
CTACACGATCTACGACAACGAGCTGCCGCTGCACTGCGCGGCCAAGTCTG
GCAGCATTCCCCTGCTGTCATGGCTCCTCGAGGACCGCCACTGTCCCATG
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