mRNA_P-wetherbeei_contig12742.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12742.1.1
Unique NamemRNA_P-wetherbeei_contig12742.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A7S3C547_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3C547_9VIRI)

HSP 1 Score: 347 bits (890), Expect = 9.810e-117
Identity = 176/246 (71.54%), Postives = 201/246 (81.71%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTGADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            S+QELP  FA+L ALGVK+NACSL+QL  FG ACPGA+VG+RFNPGLGSGGTGKTNVGGP SSFG+WHE LP  Q +A  H L+VV++HTHIGSGSDPAVWQKVSGMSLDLVR FPEV  LNLGGGYKV RM+ EA TD+ V+GAPV    + FA ETGR+LHLEIEPGTFL+A AGALV+T  D V TG+ G  F+KLDAGMT++LRPSLYGAQ P+V++    A GSAA   ES VVVGHCCES
Sbjct:   44 SSQELPEFFADLVALGVKINACSLSQLQRFGEACPGAEVGLRFNPGLGSGGTGKTNVGGPSSSFGIWHELLPETQRIAEEHGLKVVRIHTHIGSGSDPAVWQKVSGMSLDLVRQFPEVATLNLGGGYKVGRMAGEASTDLDVVGAPVADAFKAFAEETGRELHLEIEPGTFLLANAGALVSTVQDVVTTGSTGHDFIKLDAGMTEVLRPSLYGAQHPLVLV---KAGGSAAEGDESYVVVGHCCES 286          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A7R9Y6N3_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y6N3_9VIRI)

HSP 1 Score: 343 bits (880), Expect = 4.760e-114
Identity = 176/246 (71.54%), Postives = 198/246 (80.49%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTGADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            STQELP  FAEL  LGVK+NACSL QL  FG A PG +VG+RFNPGLGSGGTGKTNVGGP SSFG+WHE LP  QE+AA H L+VV++HTHIGSGSDPAVWQKVSGMSLDL R FP+VT LNLGGGYKV RMSYEA TD+QV+G PV      FA ETGR+L LEIEPGTFL+A AGALVT   D V+TGA+G  F+KLD+GMT++LRPSLYGAQ PIV++      G+AA   ES VVVGHCCES
Sbjct:  128 STQELPDFFAELVELGVKVNACSLEQLRRFGAAFPGGEVGLRFNPGLGSGGTGKTNVGGPSSSFGIWHESLPECQEIAAAHDLKVVRIHTHIGSGSDPAVWQKVSGMSLDLCRQFPDVTHLNLGGGYKVGRMSYEASTDLQVVGEPVTDAFRAFAEETGRELALEIEPGTFLLANAGALVTAVQDVVSTGAEGHNFIKLDSGMTEVLRPSLYGAQHPIVLVKN---GGTAAEGDESYVVVGHCCES 370          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A7S2CVR2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CVR2_9STRA)

HSP 1 Score: 335 bits (859), Expect = 1.690e-111
Identity = 171/246 (69.51%), Postives = 197/246 (80.08%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTGADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            STQELP + AEL A+G+K+NACSL+QL AFG A PGADVG+RFNPGLGSGGTGKTNVGGP SSFG+W+E       +AA H L+VV+VHTHIGSGSDPAVWQK +GMS+DL R FP+V  LNLGGGYKVARM+ +  TD+Q  GAPVK+    FA ETGR+LHLEIEPGTFLVA  GA+V+T  DKV+TG  G TFLKLDAGMTD+LRPSLYGAQ P++V+   PAA    R TE  VVVGHCCES
Sbjct:   81 STQELPENIAELVAMGIKVNACSLSQLRAFGEALPGADVGLRFNPGLGSGGTGKTNVGGPSSSFGIWYEWEEECAAIAAEHNLKVVRVHTHIGSGSDPAVWQKTAGMSIDLCRNFPDVVTLNLGGGYKVARMATDKFTDLQECGAPVKEIFTKFAEETGRELHLEIEPGTFLVANTGAVVSTVQDKVSTGPSGHTFLKLDAGMTDVLRPSLYGAQHPLIVVPADPAAS---RDTEKVVVVGHCCES 323          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A061S913_9CHLO (Diaminopimelate decarboxylase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S913_9CHLO)

HSP 1 Score: 335 bits (859), Expect = 2.880e-110
Identity = 167/246 (67.89%), Postives = 200/246 (81.30%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTGADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            S+QELP+ F EL   GVKLNACSL+QL+ +GR+ PG +VG+R NPGLGSGGTG+TNVGGP SSFG+WHE LP  +E+ ARH L+VV++HTHIGSGSDP VWQ+V+ +++D VR FP+VT LN+GGGYKVARMS E  TD+QVIG P K+ +E+FA ETGRKLHLEIEPGTFLVA A ++VTT  D   TGA G TFLKLDAGMTD+LRPSLYGAQ P+VV+ G    G++A  T S VVVGHCCES
Sbjct:  174 SSQELPSFFEELIGQGVKLNACSLSQLERYGRSFPGGEVGLRVNPGLGSGGTGRTNVGGPSSSFGIWHELLPEAREIIARHSLKVVRIHTHIGSGSDPVVWQRVAKLNMDTVRQFPDVTVLNMGGGYKVARMSNEKSTDLQVIGTPAKEALEEFAAETGRKLHLEIEPGTFLVANACSVVTTVQDMTTTGAKGHTFLKLDAGMTDVLRPSLYGAQHPLVVVKGE---GNSAEGTSSYVVVGHCCES 416          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A7S2SXD7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SXD7_9STRA)

HSP 1 Score: 330 bits (846), Expect = 1.590e-108
Identity = 169/246 (68.70%), Postives = 196/246 (79.67%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTGADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            STQEL  DF  L  LG+K+NACSL QL  FG   PG++VG+RFNPGLGSGGTGKTNVGGP SSFG+WHE    V  +A    L+VV++HTHIGSGSDPAVWQ+VSGMSLDLVR FP+V+ LNLGGGYKV RMS E  TD+ V+GAPVK +   FA ETGR+LHLEIEPGTFLVA AGA+V +  DKV TG++G TFLKLDAGMTD+LRPSLYGAQ P+VV++  P+   A  +TES VVVGHCCES
Sbjct:  154 STQELGPDFENLVPLGLKINACSLQQLRRFGEKFPGSEVGIRFNPGLGSGGTGKTNVGGPSSSFGIWHELADDVAAIAEEFDLKVVRIHTHIGSGSDPAVWQRVSGMSLDLVRRFPDVSILNLGGGYKVGRMSDEGSTDLSVVGAPVKDQFVAFAEETGRELHLEIEPGTFLVANAGAVVCSVQDKVTTGSEGHTFLKLDAGMTDVLRPSLYGAQHPLVVVSSEPSR-DADESTESVVVVGHCCES 398          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A7S0ZA73_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0ZA73_9CHLO)

HSP 1 Score: 324 bits (830), Expect = 4.200e-108
Identity = 165/247 (66.80%), Postives = 200/247 (80.97%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTG-ADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            S+QELP  F +L   GVK+NACSL+QL+ FG   PG +VGVRFNPGLGSGGTGKTNVGGP SSFG+W+E LP+V+E+  ++KL+VV++HTHIGSGSDPAVWQKVSGMSLDL R FP VT LNLGGGYKV RMSYE  TD+QV+G PVK+  E FA++TGR+L LEIEPGTFL+A + A+VT+  DKV TG ++G TFLKLD GMT++LRPSLYG+Q P+V ++   AAG+    T   VVVGHCCES
Sbjct:   30 SSQELPTFFPDLVKQGVKVNACSLSQLERFGEVFPGGEVGVRFNPGLGSGGTGKTNVGGPSSSFGIWYESLPKVKEIVEKYKLKVVRIHTHIGSGSDPAVWQKVSGMSLDLCREFPGVTTLNLGGGYKVGRMSYEKSTDLQVVGVPVKEAFEAFAKDTGRQLKLEIEPGTFLLANSCAVVTSVQDKVVTGTSEGHTFLKLDMGMTEVLRPSLYGSQHPLVSVS---AAGTLPTTTADYVVVGHCCES 273          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A7S0KQC7_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KQC7_9CHLO)

HSP 1 Score: 324 bits (830), Expect = 2.200e-106
Identity = 165/247 (66.80%), Postives = 200/247 (80.97%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTG-ADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            S+QELP  F +L   GVK+NACSL+QL+ FG   PG +VGVRFNPGLGSGGTGKTNVGGP SSFG+W+E LP+V+E+  ++KL+VV++HTHIGSGSDPAVWQKVSGMSLDL R FP VT LNLGGGYKV RMSYE  TD+QV+G PVK+  E FA++TGR+L LEIEPGTFL+A + A+VT+  DKV TG ++G TFLKLD GMT++LRPSLYG+Q P+V ++   AAG+    T   VVVGHCCES
Sbjct:  139 SSQELPTFFPDLVKQGVKVNACSLSQLERFGEVFPGGEVGVRFNPGLGSGGTGKTNVGGPSSSFGIWYESLPKVKEIVEKYKLKVVRIHTHIGSGSDPAVWQKVSGMSLDLCREFPGVTTLNLGGGYKVGRMSYEKSTDLQVVGVPVKEAFEAFAKDTGRQLKLEIEPGTFLLANSCAVVTSVQDKVVTGTSEGHTFLKLDMGMTEVLRPSLYGSQHPLVSVS---AAGTLPTTTADYVVVGHCCES 382          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A096P9M8_OSTTA (Orn/DAP/Arg decarboxylase 2, N-terminal n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096P9M8_OSTTA)

HSP 1 Score: 323 bits (829), Expect = 2.850e-106
Identity = 167/247 (67.61%), Postives = 194/247 (78.54%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTG-ADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            STQELP+ F EL   GV++NACSL QL+ FG A PG ++GVRFNPGLGSGGTGKTNVGGP SSFG+W+E LPRV+E+ A + L+VV+VHTHIGSGSDPAVWQKVSGMSLDL R FP+VT LNLGGGYKV RMSYE  TD+ V+G PVK+  E FA ETGRKL LEIEPGTFL+A + A+VT   DKV TG A+G TFLKLD GMT++LRPSLYG+Q P+V +      G+        VVVGHCCES
Sbjct:  135 STQELPSFFPELVEKGVRINACSLDQLERFGAAFPGGEIGVRFNPGLGSGGTGKTNVGGPSSSFGIWYELLPRVKEIVAEYNLKVVRVHTHIGSGSDPAVWQKVSGMSLDLCREFPDVTTLNLGGGYKVGRMSYEKSTDLAVVGVPVKEAFEKFAEETGRKLKLEIEPGTFLLANSCAVVTRVQDKVTTGTAEGHTFLKLDCGMTEVLRPSLYGSQHPLVSVTKD---GTLPETQAEYVVVGHCCES 378          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A0A4D9D992_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D992_9STRA)

HSP 1 Score: 323 bits (829), Expect = 5.040e-106
Identity = 163/244 (66.80%), Postives = 188/244 (77.05%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTTDKVNTGADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            S+QELP+DF     LGV +NACS++QL  FG  CPG  +G+RFNPG+GSGGTGKTNVGGP S+FG+WHE LP V+ V A HKL+VV+VHTHIGSGSDPAVWQ V+ +SLDLVR FP+V  LNLGGGYKV RM  E  TD+  IGAPVK++ EDFA ETGRKLHLEIEPGTFLVA AGALV   +  T     TFLKLDAGMT++LRPSLYGAQ P+VV+   P   + A    S VVVGHCCES
Sbjct:  153 SSQELPSDFDSFVDLGVHINACSISQLQRFGERCPGGKIGLRFNPGVGSGGTGKTNVGGPSSAFGIWHELLPEVKRVVAEHKLQVVRVHTHIGSGSDPAVWQNVAALSLDLVREFPQVETLNLGGGYKVGRMRQEQSTDLAKIGAPVKEKFEDFALETGRKLHLEIEPGTFLVANAGALVCRVQDKTSTSAHTFLKLDAGMTEVLRPSLYGAQHPLVVI---PKDRTRADRAASYVVVGHCCES 393          
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Match: A4S9T6_OSTLU (Diaminopimelate decarboxylase n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S9T6_OSTLU)

HSP 1 Score: 322 bits (825), Expect = 1.550e-105
Identity = 169/247 (68.42%), Postives = 195/247 (78.95%), Query Frame = 1
Query:    1 STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSGGTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAVWQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKEVEDFARETGRKLHLEIEPGTFLVATAGALVTT--DKVNTG-ADGRTFLKLDAGMTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES 732
            STQELP  F +L   GVK+NACSL QL+ FGRA PG +VGVRFNPGLGSGGTGKTNVGGP SSFG+W E LPRV+E+  ++ L+VV+VHTHIGSGSDPAVWQKVSGMSLDL R FP V  LNLGGGYKV RMSYE  TD+ V+G PVK+  E FA+ETGRKL LEIEPGTFL+A + A+VT+  DKV TG A+G TFLKLD GMT++LRPSLYG+Q P+V ++    AG    A    VVVGHCCES
Sbjct:  144 STQELPRFFEDLVRRGVKVNACSLDQLERFGRAFPGGEVGVRFNPGLGSGGTGKTNVGGPSSSFGIWFESLPRVKEIVEQYDLKVVRVHTHIGSGSDPAVWQKVSGMSLDLCREFPSVDTLNLGGGYKVGRMSYEKSTDLAVVGVPVKEAFEAFAKETGRKLKLEIEPGTFLLANSCAVVTSVQDKVVTGTAEGHTFLKLDMGMTEVLRPSLYGSQHPLVSVSK---AGELPAAQADYVVVGHCCES 387          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12742.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3C547_9VIRI9.810e-11771.54Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7R9Y6N3_9VIRI4.760e-11471.54Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S2CVR2_9STRA1.690e-11169.51Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A061S913_9CHLO2.880e-11067.89Diaminopimelate decarboxylase n=1 Tax=Tetraselmis ... [more]
A0A7S2SXD7_9STRA1.590e-10868.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0ZA73_9CHLO4.200e-10866.80Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A7S0KQC7_9CHLO2.200e-10666.80Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A096P9M8_OSTTA2.850e-10667.61Orn/DAP/Arg decarboxylase 2, N-terminal n=2 Tax=Os... [more]
A0A4D9D992_9STRA5.040e-10666.80Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A4S9T6_OSTLU1.550e-10568.42Diaminopimelate decarboxylase n=1 Tax=Ostreococcus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12742contigP-wetherbeei_contig12742:175..1943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog70448.A0A096P9M8
PFAMsOrn_Arg_deC_N,Orn_DAP_Arg_deC
Model size732
Max annot lvl33090|Viridiplantae
KEGG rclassRC00299
KEGG koko:K01586
KEGG ReactionR00451
KEGG Pathwayko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
Exons5
Evalue4.67e-107
EggNOG OGsCOG0019@1|root,KOG0622@2759|Eukaryota,37Q1G@33090|Viridiplantae
EC4.1.1.20
DescriptionDiaminopimelate decarboxylase
Cds size732
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.5701127-CDS-P-wetherbeei_contig12742:174..4831683185959.5701127-CDS-P-wetherbeei_contig12742:174..483Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12742 175..483 +
1683185959.58213-CDS-P-wetherbeei_contig12742:818..9321683185959.58213-CDS-P-wetherbeei_contig12742:818..932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12742 819..932 +
1683185959.5943666-CDS-P-wetherbeei_contig12742:1256..13791683185959.5943666-CDS-P-wetherbeei_contig12742:1256..1379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12742 1257..1379 +
1683185959.6033733-CDS-P-wetherbeei_contig12742:1682..18031683185959.6033733-CDS-P-wetherbeei_contig12742:1682..1803Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12742 1683..1803 +
1683185959.6113608-CDS-P-wetherbeei_contig12742:1878..19431683185959.6113608-CDS-P-wetherbeei_contig12742:1878..1943Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12742 1879..1943 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12742.1.1prot_P-wetherbeei_contig12742.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12742 175..1943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12742.1.1

>prot_P-wetherbeei_contig12742.1.1 ID=prot_P-wetherbeei_contig12742.1.1|Name=mRNA_P-wetherbeei_contig12742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=244bp
STQELPADFAELHALGVKLNACSLAQLDAFGRACPGADVGVRFNPGLGSG
GTGKTNVGGPGSSFGVWHEQLPRVQEVAARHKLRVVKVHTHIGSGSDPAV
WQKVSGMSLDLVRAFPEVTRLNLGGGYKVARMSYEAGTDMQVIGAPVKKE
VEDFARETGRKLHLEIEPGTFLVATAGALVTTDKVNTGADGRTFLKLDAG
MTDLLRPSLYGAQQPIVVLAGTPAAGSAARATESCVVVGHCCES
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mRNA from alignment at P-wetherbeei_contig12742:175..1943+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12742.1.1 ID=mRNA_P-wetherbeei_contig12742.1.1|Name=mRNA_P-wetherbeei_contig12742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1769bp|location=Sequence derived from alignment at P-wetherbeei_contig12742:175..1943+ (Phaeothamnion wetherbeei SAG_119_79)
AGCACGCAGGAGCTCCCGGCGGACTTCGCTGAGCTGCATGCGCTCGGCGT CAAGCTCAATGCGTGCTCCCTCGCGCAGCTCGACGCCTTCGGCCGCGCTT GCCCCGGTGCCGACGTCGGCGTGCGGTTCAACCCCGGCCTGGGCTCGGGC GGGACGGGAAAGACGAACGTCGGCGGGCCCGGGTCAAGCTTCGGTGTATG GCATGAGCAGCTGCCGCGGGTGCAGGAGGTCGCGGCGCGGCACAAGCTGC GGGTGGTGAAGGTGCACACGCACATTGGGTCCGGCTCGGATCCTGCCGTC TGGCAGAAGGTAAGCAGCGGTTGAGAATGGGTGGGGGAATGGAGAGGAGC CGATCTGGTCTCTTCGTAAAGGGATCTGGGAAAAGATGGGTGACTGTGGC TGCCGTGAAAGAAGTGTACGATTTCTCCCGTTGCCAACGCGTTGCGGCGC TGCTTCTACCCCTTTCATTGACGGCGTCGTTGCTTTGTGTGATGCCGACT GCATCAGTGCGTGCATCAGCCGCTGCCACATCGCCGCCGCCGTTGCCGCC GCTTGCCGCTTTTTTATCGCCGCTGATCCGCGCTGCTGCCTTGTTGGGTC CTTAAAATCGAATAAACAAACTGAACAATTTCAAACACGAAAAGGTGTCG GGCATGTCTTTGGACCTGGTGCGGGCGTTCCCTGAGGTGACGCGCCTCAA CCTCGGCGGCGGCTACAAGGTCGCCCGCATGAGCTACGAGGCCGGCACCG ACATGCAGGTAGGTCTCTGGGACTGGATACACTGGGAATCTGCAAGCCGG TGGCGAGATCAATTGTGGCTTTCTTGTATCTTTCCAGTTTTGCTATACGA GTATCGCGAGATTTATGAGTCCACAAAGTCGTTGCTCTGCTCTTGGTTGC CTCGCGACCGGAAGCGCTCAACATTTGCTCTTATTTTGTTTGCATCCAAA CATAACGGATGGGGACGGCTCACTTTGCATCGGCGGCGACGGCATCGTTT CGCTGTTTGCGACGCTAATGTGTTGACGTTGGTGGCGGCTTGTGCTGGTT GCGGCGCCGGCTGCATCCCTGCTCGGTGGCAGGTTATTGGAGCGCCGGTG AAAAAGGAGGTTGAGGACTTCGCTCGGGAGACGGGAAGGAAGCTCCACTT GGAGATCGAGCCCGGCACATTCCTCGTCGCCACGGCGGGTGCGCTCGTCA CCACCGTCCAGGCAGGCAGCGAAAAAAACACCTTTCCACTTAGAGCCTTT TCTGATTCTTTTCTCTTCGTGCATTCTAGCCCTCTTTCTGTCCTGGCTTC TTGGTTCCTCAATCCTTCTGCACTGTTTTGTACTCCTTGTATGTTCCTCC GTTCTGGACCTTGCGAGCTGGCTCCTGATCTCGGCAGTCGGCTGATGTCA GTGCACGTGCGTTTGTTTGGGGCTCGACCCGTGGCCTGCGGCTGAATTTT GCATTCTCCTAGTCACGTGACCTTCCCTCTCCCTTCCTCTTCTTCCTCCT CTCCACAGGATAAGGTCAACACGGGGGCCGACGGCCGCACATTCCTGAAG CTCGACGCCGGCATGACGGACCTGCTCCGCCCTTCCCTCTACGGCGCCCA GCAGCCCATTGTCGTTCTGGCCGGCACACGTGCCGGCGCCGCCGTCGCCG GCGCGGCAGGAACTTCTGCCGCCGCCGCCGCTGACTCCACCGCCACCGGA TCAGCGGCCGCCGGGTCAGCAGCCAGGGCGACGGAGTCCTGCGTGGTGGT GGGGCACTGCTGCGAGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12742:175..1943+

>mRNA_P-wetherbeei_contig12742.1.1 ID=mRNA_P-wetherbeei_contig12742.1.1|Name=mRNA_P-wetherbeei_contig12742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=732bp|location=Sequence derived from alignment at P-wetherbeei_contig12742:175..1943+ (Phaeothamnion wetherbeei SAG_119_79)
AGCACGCAGGAGCTCCCGGCGGACTTCGCTGAGCTGCATGCGCTCGGCGT
CAAGCTCAATGCGTGCTCCCTCGCGCAGCTCGACGCCTTCGGCCGCGCTT
GCCCCGGTGCCGACGTCGGCGTGCGGTTCAACCCCGGCCTGGGCTCGGGC
GGGACGGGAAAGACGAACGTCGGCGGGCCCGGGTCAAGCTTCGGTGTATG
GCATGAGCAGCTGCCGCGGGTGCAGGAGGTCGCGGCGCGGCACAAGCTGC
GGGTGGTGAAGGTGCACACGCACATTGGGTCCGGCTCGGATCCTGCCGTC
TGGCAGAAGGTGTCGGGCATGTCTTTGGACCTGGTGCGGGCGTTCCCTGA
GGTGACGCGCCTCAACCTCGGCGGCGGCTACAAGGTCGCCCGCATGAGCT
ACGAGGCCGGCACCGACATGCAGGTTATTGGAGCGCCGGTGAAAAAGGAG
GTTGAGGACTTCGCTCGGGAGACGGGAAGGAAGCTCCACTTGGAGATCGA
GCCCGGCACATTCCTCGTCGCCACGGCGGGTGCGCTCGTCACCACCGATA
AGGTCAACACGGGGGCCGACGGCCGCACATTCCTGAAGCTCGACGCCGGC
ATGACGGACCTGCTCCGCCCTTCCCTCTACGGCGCCCAGCAGCCCATTGT
CGTTCTGGCCGGCACACCGGCCGCCGGGTCAGCAGCCAGGGCGACGGAGT
CCTGCGTGGTGGTGGGGCACTGCTGCGAGTCC
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