mRNA_P-wetherbeei_contig12730.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12730.1.2
Unique NamemRNA_P-wetherbeei_contig12730.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A835YJB8_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJB8_9STRA)

HSP 1 Score: 185 bits (470), Expect = 3.530e-50
Identity = 98/125 (78.40%), Postives = 109/125 (87.20%), Query Frame = 1
Query:  139 SQASDDIEYLHETIRKYNTADSEEVVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAMPQW 513
            S A DDI YLHET+R ++TADSEEVVELHRTVQ LFE+EEALLN+HM+VIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILD+K +LT  L+  L  FRRHLE EE VS RV +MPQ+
Sbjct:  429 SGAGDDIRYLHETLRLHSTADSEEVVELHRTVQSLFEKEEALLNMHMSVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDRKMQLTAMLKLHLGQFRRHLEEEESVSKRVSSMPQY 553          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: D8LNA3_ECTSI (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA3_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 1.530e-39
Identity = 89/133 (66.92%), Postives = 104/133 (78.20%), Query Frame = 1
Query:  139 SQASDDIEYLHETIRKYNTADS--EE----VVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAM--PQW 513
            + A+ DI Y+HE++R+Y+  +   EE    VVELH TVQ LFEEEEALLNLHM +IQENAELLTEEGRLLQQIQGDDV+DYDIDAYA RLSEILD+K  L   LQ+RLR FR HLEAEEK S +V  +  PQ+
Sbjct:  622 ASAASDINYMHESLRQYHPEEGCDEEGEGGVVELHHTVQSLFEEEEALLNLHMNIIQENAELLTEEGRLLQQIQGDDVIDYDIDAYATRLSEILDRKMTLMSSLQKRLRNFRGHLEAEEKASVKVRDLHVPQY 754          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A7S1UHG8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHG8_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.360e-38
Identity = 82/126 (65.08%), Postives = 96/126 (76.19%), Query Frame = 1
Query:  145 ASDDIEYLHETIRKYNTA---DSEEVVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAMPQW 513
            A  DI YL +TIR+ N     D  +VV+LHRTV GLFEEEEALLN+HM+VIQENAELLTEEGRLL  IQG+DVVDYDIDAYA RL  IL +KAEL  +LQ +L+ FRR L  EE VS R+  +PQ+
Sbjct:   90 AEGDIAYLGQTIRQQNGDAGDDGADVVDLHRTVAGLFEEEEALLNMHMSVIQENAELLTEEGRLLSCIQGEDVVDYDIDAYAQRLDTILTRKAELISKLQLQLKRFRRKLAEEEAVSKRIREVPQY 215          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A7S3UPW1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPW1_HETAK)

HSP 1 Score: 139 bits (350), Expect = 2.340e-37
Identity = 74/101 (73.27%), Postives = 86/101 (85.15%), Query Frame = 1
Query:  202 SEEVVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAM 504
            S E+ E+HRTVQ +FEEEEALLN HMTVIQE AELLTEEGRLLQ IQGD+VVDYDIDAYAARL EIL +K E+T  LQR+L+ FR+HL+ EE+VS R+ AM
Sbjct:    3 SAELEEMHRTVQRVFEEEEALLNRHMTVIQETAELLTEEGRLLQGIQGDEVVDYDIDAYAARLEEILVRKQEITSGLQRQLQRFRKHLQDEERVSQRIKAM 103          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A7S2BV61_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BV61_9STRA)

HSP 1 Score: 135 bits (341), Expect = 8.440e-36
Identity = 71/106 (66.98%), Postives = 84/106 (79.25%), Query Frame = 1
Query:  196 ADSEEVVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAMPQW 513
            A ++EV++LH+TV  LFEEEE+LLNLHM VIQENAELLTEEGRLLQ IQGD+V DYDIDAYA RL EILD+KAEL   LQ +L +FR  L+ EE  S R+  MP +
Sbjct:   17 AQAKEVLDLHKTVDNLFEEEESLLNLHMNVIQENAELLTEEGRLLQNIQGDEVGDYDIDAYAGRLQEILDRKAELITMLQEQLSSFRHQLQEEEDASQRIGQMPSY 122          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A7S2XW33_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW33_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.080e-33
Identity = 69/105 (65.71%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  202 SEEVVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRV-HAMPQW 513
            S + +E+HRTVQ +FEEEEALL+LHM VIQE A LLTEEG LLQQIQGDDVVDYDIDAYA RL +IL +K ELT  LQ++L +FR+HL+ EE+V+ R+   +PQ+
Sbjct:   21 SADAMEMHRTVQKVFEEEEALLDLHMVVIQETAGLLTEEGLLLQQIQGDDVVDYDIDAYATRLEQILQRKQELTSGLQKQLASFRKHLQEEERVARRLGDVIPQY 125          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A7S4N7H4_9STRA (Kinesin-like protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7H4_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.320e-31
Identity = 68/133 (51.13%), Postives = 97/133 (72.93%), Query Frame = 1
Query:  130 LQRSQASDDIEYLHETIRKYNTADSEE-----VVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAMPQW 513
            +++ ++ DD+E LH +++  N+ +        V +LHRTVQ LFEEEE LLNLHM++IQENAELLTEEGRLLQ +QG+++VDYDID YA+RL  ILDKK  +   LQ +L + R  L+ EE++S +V  +P++
Sbjct:  472 VEQEESLDDLEILHASLKDDNSEEESSDNGAAVAQLHRTVQALFEEEEDLLNLHMSIIQENAELLTEEGRLLQSVQGENIVDYDIDQYASRLGNILDKKTHMIRSLQEKLSSLRSQLKKEEELSKKVENLPEY 604          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A7S1ZTI2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZTI2_TRICV)

HSP 1 Score: 120 bits (302), Expect = 7.720e-30
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 1
Query:  205 EEVVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAMPQW 513
            E+   L +TVQ LFEEEE LLNLHM++IQENAELLTEEGRLLQ +QGD+VVDYDID YA+ L  ILD+K  +   LQR+L +FR  L  EE++S +V ++P +
Sbjct:   37 EDAERLRKTVQSLFEEEEDLLNLHMSIIQENAELLTEEGRLLQSVQGDEVVDYDIDTYASCLGNILDRKTHMITDLQRKLASFRDQLRREEELSRKVGSLPDY 139          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A7S4UQ46_9STRA (Kinesin-like protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UQ46_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.830e-29
Identity = 63/102 (61.76%), Postives = 81/102 (79.41%), Query Frame = 1
Query:  208 EVVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAMPQW 513
            E  +L RT+Q LFEEEE LLNLHM++IQENAELLTEEGRLLQ +QGDDVVDYDID YA+RL  ILD+K +L+  LQ +L +FR  L+ EE++S ++  +P +
Sbjct:  218 EAAQLQRTIQDLFEEEEDLLNLHMSIIQENAELLTEEGRLLQSVQGDDVVDYDIDQYASRLGNILDRKTQLSTLLQNKLVSFRSQLKKEEELSKKIGNVPDF 319          
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Match: A0A7S4A5F3_9STRA (Kinesin-like protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5F3_9STRA)

HSP 1 Score: 127 bits (319), Expect = 9.400e-29
Identity = 71/127 (55.91%), Postives = 83/127 (65.35%), Query Frame = 1
Query:  133 QRSQASDDIEYLHETIRKYNTADSEEVVELHRTVQGLFEEEEALLNLHMTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTGRLQRRLRTFRRHLEAEEKVSSRVHAMPQW 513
            +R    DD+  LH T+ +      ++V  LH+TV  LFE EEALLN HMTVIQENAELLTEEGR+LQQ+QG DVVDYDID Y ARL  IL++KAE    LQ +L  F   L  EE  S  V  MP W
Sbjct:  495 ERPTRQDDLALLHSTLER-----GQDVAALHKTVDSLFEAEEALLNAHMTVIQENAELLTEEGRMLQQVQGGDVVDYDIDTYVARLGAILNRKAEQIAALQGQLAGFAAKLREEEDQSRLVRRMPMW 616          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12730.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJB8_9STRA3.530e-5078.40Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
D8LNA3_ECTSI1.530e-3966.92Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S1UHG8_9STRA1.360e-3865.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3UPW1_HETAK2.340e-3773.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BV61_9STRA8.440e-3666.98Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XW33_9STRA1.080e-3365.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4N7H4_9STRA8.320e-3151.13Kinesin-like protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S1ZTI2_TRICV7.720e-3060.19Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4UQ46_9STRA1.830e-2961.76Kinesin-like protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4A5F3_9STRA9.400e-2955.91Kinesin-like protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12730contigP-wetherbeei_contig12730:326..1946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNA3
PFAMsKinesin
Model size1075
Max annot lvl2759|Eukaryota
KEGG koko:K10393
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.11e-26
EggNOG OGsCOG5059@1|root,KOG0246@2759|Eukaryota
Descriptionmicrotubule motor activity
Cds size240
COG categoryZ
BRITEko00000,ko03036,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.0872347-UTR-P-wetherbeei_contig12730:325..6011683185959.0872347-UTR-P-wetherbeei_contig12730:325..601Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12730 326..601 +
1683185959.1255398-UTR-P-wetherbeei_contig12730:1387..19461683185959.1255398-UTR-P-wetherbeei_contig12730:1387..1946Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12730 1388..1946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185959.0967321-CDS-P-wetherbeei_contig12730:601..6161683185959.0967321-CDS-P-wetherbeei_contig12730:601..616Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12730 602..616 +
1683185959.1047716-CDS-P-wetherbeei_contig12730:907..9581683185959.1047716-CDS-P-wetherbeei_contig12730:907..958Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12730 908..958 +
1683185959.1136062-CDS-P-wetherbeei_contig12730:1213..13871683185959.1136062-CDS-P-wetherbeei_contig12730:1213..1387Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12730 1214..1387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12730.1.2prot_P-wetherbeei_contig12730.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12730 602..1387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12730.1.2

>prot_P-wetherbeei_contig12730.1.2 ID=prot_P-wetherbeei_contig12730.1.2|Name=mRNA_P-wetherbeei_contig12730.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
MTVIQENAELLTEEGRLLQQIQGDDVVDYDIDAYAARLSEILDKKAELTG
RLQRRLRTFRRHLEAEEKVSSRVHAMPQW*
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mRNA from alignment at P-wetherbeei_contig12730:326..1946+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12730.1.2 ID=mRNA_P-wetherbeei_contig12730.1.2|Name=mRNA_P-wetherbeei_contig12730.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1621bp|location=Sequence derived from alignment at P-wetherbeei_contig12730:326..1946+ (Phaeothamnion wetherbeei SAG_119_79)
GACGACGACTCCGACGCCGATGAGAGCTCCGGCGGTGGGGGCGGCGGCGG CGGCGAGCTGCGCAATGGCGGCGGCGGCGGCGGCGGCCACCGGAGCGCGG CGGCAGCAGCGGAGGGGGCGGCTGCGGCGCTGCAGCGGTCGCAAGCGTCG GACGACATTGAGTACCTGCATGAGACCATACGCAAGTACAACACGGCGGA CAGCGAGGAGGTGGTGGAGCTCCACCGGACGGTGCAGGGACTCTTCGAGG AGGAAGAGGCCCTCCTAAACCTACACATGACTGTTATACAGGTGCGAGAA ACAGTTAGTTTCATGTGGGTGACAGGATTGACGGTCAGACTGTTTAATGC TTCTTTCTCCGGCAACCGGAGGGCAGTGACCGCCCGCTGTGGACTGCGTT GATTGTCTTCGAACGTAAGGTTTGAGCTGCATGTCGGAATGGACCCGCCC CCGTCATGTGGTTTCGATCGCATCTCTGGTAGCAAAATGAACCCCAACTA AGTTCCCGTTTCAAGGCCTGCGGCCACCAACGCTCATTGTTTGAAGCGAC GCTGTCCTGCTGTTCATCCCGGGACGCTACAGGAGAATGCTGAGCTCCTG ACGGAAGAGGGTCGACTACTGCAACAAATCCAGGTGAGGCAGGCACAGCC CTCACCTTTCCCTCTCGCTTGTTTAGACTTTTTCTCTCCTTTGCTCTATT GTATTGCGTGGGATTCCTTTGTTGAACCTGTCATTGGCTCCGGTCAGGTA TATAGACACCACTGCTTCCATATCGCCTTCGTTACATTTCGTGTTTGCCT GGCCCCCATCTAATATGGAACGAGTCCGGTCCGATTCCCTTTCTTTCCCT CTTTCTCTGGCGGTTCATACTGTGGTGGCTGCCATCAGGGGGACGACGTG GTGGACTACGACATCGATGCGTATGCGGCTCGTCTGTCGGAGATCCTTGA CAAGAAGGCTGAGCTGACGGGCCGCTTGCAGCGCCGCCTGCGCACCTTCC GCAGGCACCTCGAGGCCGAGGAGAAAGTCTCCAGCCGCGTCCACGCCATG CCCCAGTGGTAGTAACGAAGGTAGCTAGCGTAAATGCTTCGCTAGTCTGG TGTCTAGCTTGCTTGGCAGCTTTGCTTGACCGGAAGACGTGGTAGCCGCG AGCCTGCCGCAGGACGATCGTTAGGACCATCAGCTGCAACCGCAATGATT AAGGCGGCCGGACGGAAAAGTGTTGCAGTTGGCGGCTGGCGGGCTGTTGG CAGTTGGCTGCGGTGCGTAGGTGTTTATTCCGTACAGGCAATAGCACCGT TGAATGCGCGGCGGGCTTCCCGCCGCCGCCGCCGCCGCTGTAATCCGCTT CTGGCGTGCAAGCTGGGTGGGATGGCATCGGAAGCATCCGAGCAAACCAA GTACGCTTCTGCGGCAGTAGATCCTGCCGGCTTGGAAAGATGATAGGGCG GGCGCCGCCTTATGTTGCCGTTGCCTGCAGGGCCCGCAGTGCAGAGCCCT TAGAGGGTCGATGCGCTCGGGCCAGGGTATGCACGATTCGCAAGCGCCAA ACCAGACAGGCAGGCGGCAGATGACACGCTGTTGCCGTATTGACGAAGAA CAAAGATCAAATTTATCGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12730:326..1946+

>mRNA_P-wetherbeei_contig12730.1.2 ID=mRNA_P-wetherbeei_contig12730.1.2|Name=mRNA_P-wetherbeei_contig12730.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig12730:326..1946+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGTTATACAGGAGAATGCTGAGCTCCTGACGGAAGAGGGTCGACT
ACTGCAACAAATCCAGGGGGACGACGTGGTGGACTACGACATCGATGCGT
ATGCGGCTCGTCTGTCGGAGATCCTTGACAAGAAGGCTGAGCTGACGGGC
CGCTTGCAGCGCCGCCTGCGCACCTTCCGCAGGCACCTCGAGGCCGAGGA
GAAAGTCTCCAGCCGCGTCCACGCCATGCCCCAGTGGTAG
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