mRNA_P-wetherbeei_contig12717.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12717.2.1
Unique NamemRNA_P-wetherbeei_contig12717.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA)

HSP 1 Score: 150 bits (379), Expect = 6.520e-45
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 1
Query:   13 DGSDDPVKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAGVH 270
            D  DDP+KA MIGFI+AYKRE+SPLLPPACRF PTCS Y V++IEEFGA +G VLTAWR+ RC P+GGYGYDPP WPPP W AG+H
Sbjct:   58 DHDDDPIKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAGIH 143          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 7.120e-37
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 1
Query:   31 VKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAG 264
            V A MI FI+AYK+ELSPL+PPACRFLPTCS YGVQAIE+FG  KG VLTAWR+ RCNP  GYG D P WPPP W AG
Sbjct:   75 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 152          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.320e-36
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   25 DPVKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAGVHG 273
            D   A++I F R YKR +SPLLP ACRF PTCSEY ++++++FG AKG VLTAWR+ RCNPLGG G+DPP WPPP W AG  G
Sbjct:   62 DTTSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTG 144          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.290e-34
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   25 DPVKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAGVHG 273
            D   A++I F R YKR +SPLLP ACRF PTCSEY ++++++FG AKG VLTAWR+ RCNPLGG G+DPP WPPP W AG  G
Sbjct:  160 DASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTG 242          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: A0A7S2R8H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8H5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.530e-34
Identity = 55/83 (66.27%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   10 ADGSDDPVKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWD 258
            AD   +PV   M+  I  YK  +SPLLPPACRFLPTCS+YGVQAIEEFG +KG VLTAWR+ RC+P GG GYDPP WPP A++
Sbjct:   56 ADKHKNPVSIGMVATIGVYKNVISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVVLTAWRLLRCSPFGGKGYDPPKWPPVAYN 138          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: B8BR73_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR73_THAPS)

HSP 1 Score: 119 bits (298), Expect = 2.010e-33
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   43 MIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAGVH 270
            MI  I  YK+ +SPLLPPACRFLPTCS+YGVQAIEEFG +KG +LTAWR+ARC+P GG GYDPP WPP A++ G +
Sbjct:    5 MINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYGSY 80          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: A0A7S0GAD0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GAD0_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.050e-33
Identity = 54/86 (62.79%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   13 DGSDDPVKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAGVH 270
            D ++DP+   M+  I  YK+ +SPLLPPACRFLPTCS+YGV AIEEFG  KG VLTAWR+ RC+P+GG GYDPP WPP A+  G +
Sbjct:   92 DKTNDPMSFSMVASIGFYKKIISPLLPPACRFLPTCSQYGVGAIEEFGPGKGAVLTAWRLLRCSPVGGRGYDPPKWPPVAYTYGSY 177          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: A0A7S0NJP1_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJP1_MICPS)

HSP 1 Score: 118 bits (296), Expect = 1.060e-32
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   13 DGSDDPVKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAG 264
            D +D PV A+ +  IR Y+ ++SPL PPACRF+PTCS+Y V A   FGA KG  LTAWR+ARC P GG GYDPP WPP A++AG
Sbjct:   10 DRADGPVVALALALIRFYRTQISPLTPPACRFVPTCSQYAVDAFRTFGAGKGAALTAWRLARCTPFGGKGYDPPRWPPVAFNAG 93          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: A0A8J5X6H3_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X6H3_DIALT)

HSP 1 Score: 118 bits (296), Expect = 8.110e-32
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 1
Query:   43 MIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAG 264
            +IGF   YK  +SP+LP ACRF+PTCS YG QA EE+GAA+G VLTAWRIARCNPLGG G+DPP WPPPAW AG
Sbjct:  100 LIGF---YKDWISPVLPRACRFVPTCSSYGEQAYEEYGAARGLVLTAWRIARCNPLGGSGFDPPCWPPPAWGAG 170          
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Match: A0A448ZKR4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKR4_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.610e-31
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 FQP-ADGSDDPVKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEEFGAAKGGVLTAWRIARCNPLGGYGYDPPVWPP 246
            FQP  D  + P+   MI  I  YK  +SPLLPPACRF+PTCS+YGVQAI+EFG +KG VLT+WR+ RC+P GG GYDPP WPP
Sbjct:  167 FQPLVDKEESPMTTAMIATIGVYKNFISPLLPPACRFVPTCSQYGVQAIKEFGPSKGVVLTSWRLLRCSPFGGKGYDPPKWPP 249          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12717.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZNH9_9STRA6.520e-4574.42Hemolytic domain-containing protein n=1 Tax=Tribon... [more]
D8LF53_ECTSI7.120e-3774.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9DFE3_9STRA4.320e-3663.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TML8_9STRA1.290e-3463.86Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2R8H5_9STRA7.530e-3466.27Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B8BR73_THAPS2.010e-3369.74Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0GAD0_9STRA2.050e-3362.79Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S0NJP1_MICPS1.060e-3260.71Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A8J5X6H3_DIALT8.110e-3272.97Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A448ZKR4_9STRA3.610e-3163.86Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12717contigP-wetherbeei_contig12717:1650..1925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LF53
PFAMsHaemolytic
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K08998
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.17e-37
EggNOG OGsCOG0759@1|root,2S1FR@2759|Eukaryota
DescriptionHaemolytic
Cds size276
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185958.5208142-CDS-P-wetherbeei_contig12717:1649..19251683185958.5208142-CDS-P-wetherbeei_contig12717:1649..1925Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12717 1650..1925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12717.2.1prot_P-wetherbeei_contig12717.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12717 1650..1925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12717.2.1

>prot_P-wetherbeei_contig12717.2.1 ID=prot_P-wetherbeei_contig12717.2.1|Name=mRNA_P-wetherbeei_contig12717.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
FQPADGSDDPVKAVMIGFIRAYKRELSPLLPPACRFLPTCSEYGVQAIEE
FGAAKGGVLTAWRIARCNPLGGYGYDPPVWPPPAWDAGVHG*
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mRNA from alignment at P-wetherbeei_contig12717:1650..1925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12717.2.1 ID=mRNA_P-wetherbeei_contig12717.2.1|Name=mRNA_P-wetherbeei_contig12717.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig12717:1650..1925+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCAACCTGCCGACGGTAGCGATGATCCCGTCAAGGCCGTCATGATCGG TTTCATTCGCGCCTACAAGCGGGAGCTCAGCCCCTTACTGCCGCCAGCGT GCCGCTTCCTGCCCACCTGCTCGGAGTACGGCGTGCAGGCCATCGAAGAG TTCGGCGCCGCAAAAGGCGGCGTCCTGACGGCGTGGAGGATCGCCAGGTG TAACCCTTTGGGCGGCTATGGCTACGATCCGCCCGTCTGGCCGCCGCCGG CATGGGACGCCGGTGTTCACGGTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12717:1650..1925+

>mRNA_P-wetherbeei_contig12717.2.1 ID=mRNA_P-wetherbeei_contig12717.2.1|Name=mRNA_P-wetherbeei_contig12717.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig12717:1650..1925+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCAACCTGCCGACGGTAGCGATGATCCCGTCAAGGCCGTCATGATCGG
TTTCATTCGCGCCTACAAGCGGGAGCTCAGCCCCTTACTGCCGCCAGCGT
GCCGCTTCCTGCCCACCTGCTCGGAGTACGGCGTGCAGGCCATCGAAGAG
TTCGGCGCCGCAAAAGGCGGCGTCCTGACGGCGTGGAGGATCGCCAGGTG
TAACCCTTTGGGCGGCTATGGCTACGATCCGCCCGTCTGGCCGCCGCCGG
CATGGGACGCCGGTGTTCACGGTTAA
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